Wall clock time and date at job start Sat Apr 11 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00363 * 2 1 4 4 H 1.48496 * 109.46891 * 269.99770 * 3 2 1 5 5 H 1.48500 * 109.47249 * 29.99130 * 3 2 1 6 6 H 1.48500 * 109.47505 * 149.99193 * 3 2 1 7 7 C 1.38814 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99439 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.47430 * 125.64716 * 179.97438 * 9 7 2 11 11 C 1.54908 * 104.83247 * 204.16331 * 10 9 7 12 12 H 1.09004 * 111.00344 * 81.06821 * 11 10 9 13 13 C 1.50703 * 111.00775 * 204.91762 * 11 10 9 14 14 C 1.38235 * 119.99736 * 51.92452 * 13 11 10 15 15 C 1.38230 * 120.00005 * 179.79188 * 14 13 11 16 16 C 1.38241 * 119.99751 * 0.46121 * 15 14 13 17 17 C 1.38231 * 119.99976 * 359.76915 * 16 15 14 18 18 C 1.38228 * 119.99870 * 232.20155 * 13 11 10 19 19 C 1.55159 * 101.58445 * 322.99595 * 11 10 9 20 20 H 1.09002 * 110.71582 * 276.96260 * 19 11 10 21 21 N 1.46497 * 110.71929 * 153.86308 * 19 11 10 22 22 C 1.34780 * 119.99566 * 155.00209 * 21 19 11 23 23 O 1.21280 * 120.00423 * 359.97438 * 22 21 19 24 24 C 1.50701 * 119.99795 * 180.02562 * 22 21 19 25 25 C 1.50703 * 109.47064 * 179.97438 * 24 22 21 26 26 C 1.41384 * 128.00526 * 269.67801 * 25 24 22 27 27 N 1.30178 * 106.39347 * 179.89665 * 26 25 24 28 28 O 1.20917 * 111.60526 * 0.38840 * 27 26 25 29 29 C 1.34049 * 111.56526 * 359.74749 * 28 27 26 30 30 C 1.47019 * 125.65047 * 0.04253 * 9 7 2 31 31 H 0.97005 * 119.99591 * 0.02562 * 1 2 3 32 32 H 1.09008 * 110.36200 * 85.33037 * 10 9 7 33 33 H 1.08996 * 110.46139 * 323.05777 * 10 9 7 34 34 H 1.08007 * 119.99679 * 359.97438 * 14 13 11 35 35 H 1.07999 * 120.00458 * 180.25268 * 15 14 13 36 36 H 1.08001 * 119.99383 * 179.79617 * 16 15 14 37 37 H 1.07995 * 119.99670 * 179.97438 * 17 16 15 38 38 H 1.07996 * 120.00752 * 359.97438 * 18 13 11 39 39 H 0.96995 * 120.00423 * 334.99514 * 21 19 11 40 40 H 1.09002 * 109.47060 * 299.99722 * 24 22 21 41 41 H 1.09001 * 109.47380 * 59.99809 * 24 22 21 42 42 H 1.07996 * 126.80303 * 0.03062 * 26 25 24 43 43 H 1.08005 * 126.77364 * 180.02562 * 29 28 27 44 44 H 1.08999 * 109.88560 * 59.48545 * 30 9 7 45 45 H 1.09000 * 109.88234 * 298.31886 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6998 6 1 3.5478 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.9334 -3.7312 0.0005 11 6 0.8522 -4.6558 -0.6124 12 1 0.8578 -4.5954 -1.7008 13 6 1.0341 -6.0791 -0.1517 14 6 1.1423 -6.3603 1.1974 15 6 1.3048 -7.6663 1.6203 16 6 1.3688 -8.6900 0.6935 17 6 1.2654 -8.4082 -0.6558 18 6 1.0985 -7.1026 -1.0785 19 6 -0.4486 -4.0440 -0.0282 20 1 -0.6340 -4.4209 0.9776 21 7 -1.5904 -4.3223 -0.9028 22 6 -2.8384 -4.3470 -0.3942 23 8 -3.0160 -4.1394 0.7874 24 6 -4.0130 -4.6338 -1.2937 25 6 -5.2842 -4.6040 -0.4848 26 6 -5.9150 -5.6774 0.1852 27 7 -6.9792 -5.1836 0.7494 28 8 -7.0947 -4.0013 0.5242 29 6 -6.0899 -3.5441 -0.2362 30 6 -0.1375 -2.5327 -0.0009 31 1 -0.4850 0.8401 -0.0004 32 1 2.1656 -4.0424 1.0191 33 1 2.8341 -3.7418 -0.6132 34 1 1.0968 -5.5599 1.9212 35 1 1.3852 -7.8865 2.6745 36 1 1.4991 -9.7100 1.0238 37 1 1.3157 -9.2079 -1.3799 38 1 1.0181 -6.8825 -2.1327 39 1 -1.4484 -4.4886 -1.8478 40 1 -4.0631 -3.8783 -2.0779 41 1 -3.8930 -5.6187 -1.7452 42 1 -5.5793 -6.7031 0.2233 43 1 -5.9502 -2.5305 -0.5821 44 1 -0.5568 -2.0518 -0.8846 45 1 -0.5552 -2.0848 0.9008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086605000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:39 Heat of formation + Delta-G solvation = 82.593613 kcal Electronic energy + Delta-G solvation = -29327.328710 eV Core-core repulsion = 25313.997893 eV Total energy + Delta-G solvation = -4013.330817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.91136 -39.93063 -39.00836 -37.19065 -34.58129 -33.92091 -32.76765 -32.10710 -31.00909 -30.75246 -29.38622 -27.80604 -26.93318 -24.59860 -23.03384 -22.72498 -22.27838 -21.70315 -20.52982 -19.93517 -19.62836 -17.91738 -17.59311 -17.16090 -16.81554 -16.47712 -15.88495 -15.28183 -15.12653 -14.80551 -14.68653 -14.47603 -13.85327 -13.70464 -13.33001 -13.25329 -13.10708 -12.88118 -12.76939 -12.48260 -12.30401 -12.15173 -11.93859 -11.35200 -11.21916 -11.15838 -11.08330 -10.94802 -10.80039 -10.43541 -10.36447 -10.14254 -10.00321 -9.80809 -9.73344 -9.29865 -8.82188 -8.76098 -8.66361 -8.32196 -6.90287 -5.75166 -3.10447 1.47216 1.51308 1.51324 2.21581 2.91394 3.23565 3.37303 3.42830 3.44974 3.55495 3.88952 4.26273 4.45116 4.66205 4.73731 4.85739 4.96054 4.99996 5.07386 5.13991 5.22395 5.28750 5.32240 5.43353 5.54487 5.59190 5.59768 5.66308 5.68249 5.71901 5.76694 5.98208 6.11240 6.12634 6.18168 6.27604 6.51235 6.55852 6.62692 6.68423 6.71570 6.91903 7.12316 7.49106 7.51720 7.77866 7.84415 8.18792 8.23320 8.53809 9.15730 9.75979 10.39814 11.35510 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.006687 B = 0.004349 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4185.995185 B = 6436.831116 C =10039.378522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.604 5.604 10 C 0.146 3.854 11 C -0.075 4.075 12 H 0.086 0.914 13 C -0.057 4.057 14 C -0.111 4.111 15 C -0.118 4.118 16 C -0.133 4.133 17 C -0.123 4.123 18 C -0.119 4.119 19 C 0.129 3.871 20 H 0.090 0.910 21 N -0.712 5.712 22 C 0.512 3.488 23 O -0.531 6.531 24 C -0.064 4.064 25 C -0.182 4.182 26 C 0.003 3.997 27 N -0.370 5.370 28 O 0.094 5.906 29 C -0.042 4.042 30 C 0.173 3.827 31 H 0.253 0.747 32 H 0.026 0.974 33 H 0.045 0.955 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.396 0.604 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.186 0.814 43 H 0.217 0.783 44 H 0.052 0.948 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.295 -15.174 -5.770 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.019 3.981 11 C -0.095 4.095 12 H 0.105 0.895 13 C -0.057 4.057 14 C -0.129 4.129 15 C -0.136 4.136 16 C -0.151 4.151 17 C -0.141 4.141 18 C -0.137 4.137 19 C 0.024 3.976 20 H 0.108 0.892 21 N -0.362 5.362 22 C 0.297 3.703 23 O -0.407 6.407 24 C -0.105 4.105 25 C -0.187 4.187 26 C -0.176 4.176 27 N -0.075 5.075 28 O 0.030 5.970 29 C -0.123 4.123 30 C 0.047 3.953 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.230 0.770 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.204 0.796 43 H 0.233 0.767 44 H 0.070 0.930 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.461 -15.275 -4.114 17.088 hybrid contribution 1.386 0.910 -0.976 1.923 sum -5.076 -14.365 -5.090 16.064 Atomic orbital electron populations 1.69961 1.04865 1.25124 1.56672 1.24810 0.95705 0.97699 1.01990 0.86121 0.78644 0.83459 0.77544 1.21589 1.21641 1.20640 1.19050 0.90448 0.82175 1.44297 0.90256 1.44401 1.01375 0.99895 1.87369 1.21608 0.93853 0.85340 0.97253 1.21684 0.97040 0.90320 1.00477 0.89535 1.19807 0.97766 0.94797 0.93375 1.21128 0.99320 0.96684 0.95733 1.21122 1.00190 0.92912 0.99410 1.21064 1.01735 0.98851 0.93412 1.21053 1.00825 0.96421 0.95759 1.21019 1.01082 0.92472 0.99139 1.22516 0.82679 0.98836 0.93610 0.89154 1.45858 1.06135 1.72031 1.12226 1.20335 0.83892 0.77164 0.88861 1.90738 1.85042 1.48304 1.16642 1.19905 0.88467 1.05039 0.97071 1.20726 0.99308 0.93188 1.05437 1.24874 0.92799 1.02022 0.97868 1.73830 1.20970 0.92407 1.20244 1.84792 1.41449 1.18391 1.52325 1.25821 0.89063 1.01185 0.96269 1.21511 0.84444 0.87408 1.01916 0.93688 0.95635 0.93693 0.85760 0.86378 0.86641 0.86544 0.86351 0.77015 0.87403 0.87702 0.79641 0.76699 0.92951 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 10.31 55.49 0.57 -25.98 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.27 10.28 -15.06 -0.15 -6.43 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -14.78 3.39 -170.07 -0.58 -15.35 16 10 C 0.15 2.85 6.63 -2.53 -0.02 2.84 16 11 C -0.08 -1.20 2.89 -89.62 -0.26 -1.46 16 12 H 0.09 1.28 7.83 -51.93 -0.41 0.88 16 13 C -0.06 -0.80 5.00 -104.63 -0.52 -1.33 16 14 C -0.11 -1.59 8.31 -39.59 -0.33 -1.92 16 15 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 16 C -0.13 -1.49 10.05 -39.58 -0.40 -1.88 16 17 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 18 C -0.12 -1.44 9.69 -39.58 -0.38 -1.82 16 19 C 0.13 2.31 2.74 -66.10 -0.18 2.13 16 20 H 0.09 1.79 6.63 -51.93 -0.34 1.45 16 21 N -0.71 -10.30 5.10 -52.03 -0.27 -10.56 16 22 C 0.51 7.71 7.82 -10.98 -0.09 7.62 16 23 O -0.53 -10.61 15.68 5.56 0.09 -10.53 16 24 C -0.06 -0.65 6.28 -29.03 -0.18 -0.83 16 25 C -0.18 -2.16 4.82 -104.42 -0.50 -2.67 16 26 C 0.00 0.04 12.16 -17.06 -0.21 -0.16 16 27 N -0.37 -5.23 12.07 30.36 0.37 -4.87 16 28 O 0.09 1.24 11.20 17.15 0.19 1.43 16 29 C -0.04 -0.47 12.26 29.73 0.36 -0.11 16 30 C 0.17 4.06 5.12 -3.07 -0.02 4.05 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.03 0.51 6.63 -51.92 -0.34 0.16 16 33 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.12 1.89 7.00 -52.48 -0.37 1.52 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.12 1.21 7.99 -52.49 -0.42 0.79 16 39 H 0.40 4.44 8.56 -40.82 -0.35 4.09 16 40 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.19 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.22 1.75 8.06 -52.48 -0.42 1.32 16 44 H 0.05 1.34 7.27 -51.93 -0.38 0.96 16 45 H 0.05 1.38 7.51 -51.93 -0.39 0.99 16 LS Contribution 378.53 15.07 5.70 5.70 Total: -1.00 -34.60 378.53 -8.64 -43.23 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.93 Total: 6.04 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -3.77 Total: -5.83 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.10 Total: -56.76 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.28 Total: -9.09 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.60 -8.64 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086605000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.828 kcal (2) G-P(sol) polarization free energy of solvation -34.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds