Wall clock time and date at job start Sat Apr 11 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00176 * 2 1 4 4 H 1.48499 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46674 * 299.99751 * 3 2 1 6 6 H 1.48500 * 109.47253 * 59.99228 * 3 2 1 7 7 C 1.38814 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99489 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99622 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.17744 * 35.45115 * 10 9 7 12 12 C 1.53035 * 109.32130 * 155.00045 * 10 9 7 13 13 C 1.53969 * 108.82788 * 175.67946 * 12 10 9 14 14 H 1.09002 * 112.99358 * 169.00978 * 13 12 10 15 15 C 1.55431 * 106.41436 * 293.82781 * 13 12 10 16 16 C 1.55167 * 100.35675 * 73.37270 * 15 13 12 17 17 H 1.08994 * 113.05279 * 162.98500 * 16 15 13 18 18 C 1.52981 * 109.32815 * 275.89289 * 10 9 7 19 19 N 1.47792 * 104.25115 * 40.55301 * 16 15 13 20 20 C 1.34779 * 125.85683 * 153.54630 * 19 16 15 21 21 O 1.21654 * 119.99624 * 359.97438 * 20 19 16 22 22 C 1.46982 * 120.00095 * 179.97438 * 20 19 16 23 23 C 1.35840 * 125.12060 * 179.97438 * 22 20 19 24 24 C 1.46099 * 106.07275 * 180.02562 * 23 22 20 25 25 C 1.39443 * 135.08019 * 179.97438 * 24 23 22 26 26 N 1.31679 * 120.07510 * 179.97438 * 25 24 23 27 27 C 1.32298 * 122.14529 * 0.02562 * 26 25 24 28 28 C 1.37755 * 121.58487 * 0.02562 * 27 26 25 29 29 C 1.39246 * 118.95161 * 359.97438 * 28 27 26 30 30 O 1.34277 * 134.37801 * 180.35191 * 29 28 27 31 31 C 1.49348 * 108.54237 * 333.48744 * 19 16 15 32 32 H 0.97004 * 120.00009 * 0.02562 * 1 2 3 33 33 H 0.96995 * 120.00430 * 0.02562 * 9 7 2 34 34 H 1.09002 * 109.57481 * 55.87744 * 12 10 9 35 35 H 1.09000 * 109.57876 * 295.48448 * 12 10 9 36 36 H 1.08998 * 111.23553 * 192.01790 * 15 13 12 37 37 H 1.09001 * 111.23305 * 316.46105 * 15 13 12 38 38 H 1.09003 * 109.53257 * 304.52579 * 18 10 9 39 39 H 1.09000 * 109.53387 * 64.75482 * 18 10 9 40 40 H 1.08007 * 126.96570 * 0.02875 * 23 22 20 41 41 H 1.08001 * 119.96217 * 359.97438 * 25 24 23 42 42 H 1.08005 * 119.21242 * 180.02562 * 27 26 25 43 43 H 1.07994 * 120.52671 * 180.02562 * 28 27 26 44 44 H 1.09004 * 110.06375 * 242.41614 * 31 19 16 45 45 H 1.09008 * 110.98665 * 120.41378 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9634 -3.5476 0.5977 12 6 1.1777 -4.7498 0.6109 13 6 1.9147 -6.0975 0.5063 14 1 1.4394 -6.8888 1.0861 15 6 2.0164 -6.4261 -1.0094 16 6 3.1048 -5.4087 -1.4430 17 1 3.5534 -5.6485 -2.4069 18 6 2.4395 -4.0212 -1.4354 19 7 4.0884 -5.4362 -0.3402 20 6 5.3993 -5.1408 -0.4441 21 8 5.8665 -4.8169 -1.5196 22 6 6.2645 -5.2099 0.7421 23 6 7.5948 -4.9358 0.7562 24 6 8.0343 -5.1348 2.1352 25 6 9.2496 -5.0243 2.8099 26 7 9.3142 -5.2819 4.0997 27 6 8.2524 -5.6496 4.7980 28 6 7.0137 -5.7844 4.2106 29 6 6.8817 -5.5257 2.8488 30 8 5.8557 -5.5515 1.9830 31 6 3.3860 -5.8455 0.9126 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3881 -0.0002 34 1 0.2350 -4.8058 0.0665 35 1 0.9836 -4.5199 1.6585 36 1 2.3339 -7.4565 -1.1696 37 1 1.0765 -6.2207 -1.5218 38 1 1.5437 -4.0433 -2.0561 39 1 3.1370 -3.2804 -1.8264 40 1 8.2043 -4.6321 -0.0822 41 1 10.1390 -4.7271 2.2741 42 1 8.3592 -5.8489 5.8542 43 1 6.1582 -6.0852 4.7971 44 1 3.4369 -5.0435 1.6490 45 1 3.8203 -6.7570 1.3236 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094955152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:02 Heat of formation + Delta-G solvation = 34.744238 kcal Electronic energy + Delta-G solvation = -30038.984140 eV Core-core repulsion = 26023.578418 eV Total energy + Delta-G solvation = -4015.405721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.96195 -40.78685 -39.28100 -38.31987 -34.83216 -33.26131 -32.80159 -31.95327 -31.30827 -30.87884 -29.84922 -27.94037 -25.93224 -25.00169 -23.71970 -23.66916 -22.52497 -21.48003 -21.12561 -19.97637 -19.12154 -18.26098 -18.00314 -17.17424 -16.82701 -16.23375 -16.06337 -15.64868 -15.31707 -14.87040 -14.74350 -14.45532 -13.97823 -13.90763 -13.66143 -13.56619 -13.40948 -13.14914 -12.96156 -12.74985 -12.35470 -12.29964 -11.92366 -11.80145 -11.71863 -11.09966 -11.01310 -10.86407 -10.65533 -10.52905 -10.29494 -10.17463 -10.10815 -10.04420 -9.71350 -9.70586 -9.60407 -8.94134 -8.80079 -8.50740 -6.97967 -5.78806 -3.07377 0.16583 0.92890 1.50880 2.07930 2.81878 3.05437 3.42170 3.42288 3.48920 3.50751 3.92115 4.06054 4.17994 4.48389 4.51581 4.56112 4.60150 4.69401 4.85245 4.89780 5.05835 5.24819 5.27555 5.33299 5.38276 5.40217 5.46672 5.55791 5.64227 5.66975 5.72785 5.81627 5.84008 5.89586 5.92977 6.02292 6.08439 6.14268 6.26044 6.40486 6.43982 6.57216 6.63878 6.92722 7.03044 7.37189 7.57565 7.70129 7.94368 8.40017 9.51592 10.08079 10.43032 11.43803 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009863 B = 0.003713 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.074209 B = 7538.316124 C = 8941.115460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.903 3.097 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.236 4.236 8 H 0.068 0.932 9 N -0.724 5.724 10 C 0.178 3.822 11 H 0.046 0.954 12 C -0.122 4.122 13 C -0.099 4.099 14 H 0.099 0.901 15 C -0.125 4.125 16 C 0.136 3.864 17 H 0.097 0.903 18 C -0.145 4.145 19 N -0.596 5.596 20 C 0.610 3.390 21 O -0.516 6.516 22 C -0.010 4.010 23 C -0.104 4.104 24 C -0.198 4.198 25 C 0.174 3.826 26 N -0.495 5.495 27 C 0.115 3.885 28 C -0.159 4.159 29 C 0.102 3.898 30 O -0.172 6.172 31 C 0.106 3.894 32 H 0.254 0.746 33 H 0.383 0.617 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.176 0.824 41 H 0.166 0.834 42 H 0.169 0.831 43 H 0.147 0.853 44 H 0.082 0.918 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.238 -18.369 5.768 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.368 4.368 8 H 0.086 0.914 9 N -0.364 5.364 10 C 0.068 3.932 11 H 0.064 0.936 12 C -0.161 4.161 13 C -0.118 4.118 14 H 0.118 0.882 15 C -0.163 4.163 16 C 0.033 3.967 17 H 0.115 0.885 18 C -0.186 4.186 19 N -0.328 5.328 20 C 0.397 3.603 21 O -0.394 6.394 22 C -0.060 4.060 23 C -0.126 4.126 24 C -0.201 4.201 25 C 0.010 3.990 26 N -0.205 5.205 27 C -0.035 4.035 28 C -0.179 4.179 29 C 0.046 3.954 30 O -0.072 6.072 31 C -0.016 4.016 32 H 0.064 0.936 33 H 0.217 0.783 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.193 0.807 41 H 0.184 0.816 42 H 0.186 0.814 43 H 0.165 0.835 44 H 0.100 0.900 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.113 -18.016 5.751 22.458 hybrid contribution -0.634 1.062 -0.422 1.307 sum 11.479 -16.954 5.329 21.157 Atomic orbital electron populations 1.69665 1.05053 1.25518 1.57884 1.24707 0.95484 0.97595 1.02987 0.86172 0.78915 0.84268 0.77236 1.20584 1.21771 1.21835 1.19252 0.90908 0.84137 1.42457 0.91430 1.42428 1.05702 0.99747 1.88521 1.20252 0.94257 0.86120 0.92534 0.93575 1.22151 0.99095 0.93127 1.01698 1.22624 0.94104 0.98711 0.96369 0.88243 1.23041 0.99259 0.98254 0.95768 1.22458 0.87136 0.97182 0.89883 0.88515 1.22858 1.00254 0.93981 1.01524 1.49058 1.06594 1.65299 1.11890 1.16188 0.80433 0.78435 0.85256 1.90895 1.73743 1.48856 1.25944 1.22195 0.94549 1.05731 0.83489 1.22661 0.93291 1.00900 0.95793 1.20961 0.96372 1.08082 0.94683 1.22454 0.95255 0.91838 0.89463 1.67800 1.31931 1.13337 1.07451 1.22606 0.86601 0.94004 1.00280 1.21064 1.00696 1.06362 0.89818 1.19917 0.85634 0.97669 0.92173 1.84106 1.34670 1.71837 1.16537 1.22725 0.92164 1.00310 0.86387 0.93582 0.78311 0.91421 0.91528 0.91106 0.89252 0.91165 0.91677 0.80667 0.81644 0.81380 0.83518 0.89989 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.90 22.82 29.55 -169.99 -5.02 17.80 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.24 -6.63 9.91 -15.06 -0.15 -6.78 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.72 -17.88 5.11 -53.41 -0.27 -18.16 16 10 C 0.18 3.43 2.38 -67.92 -0.16 3.27 16 11 H 0.05 0.96 5.90 -51.93 -0.31 0.66 16 12 C -0.12 -1.82 4.93 -26.21 -0.13 -1.95 16 13 C -0.10 -1.11 4.27 -87.93 -0.38 -1.49 16 14 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 15 C -0.13 -1.38 6.22 -24.29 -0.15 -1.53 16 16 C 0.14 1.94 3.99 -65.62 -0.26 1.67 16 17 H 0.10 1.37 8.01 -51.93 -0.42 0.95 16 18 C -0.14 -2.58 5.27 -26.28 -0.14 -2.72 16 19 N -0.60 -8.71 2.39 -161.38 -0.39 -9.09 16 20 C 0.61 9.78 7.84 -12.72 -0.10 9.68 16 21 O -0.52 -9.56 17.08 5.23 0.09 -9.47 16 22 C -0.01 -0.14 6.91 -36.90 -0.25 -0.40 16 23 C -0.10 -1.30 10.80 -37.29 -0.40 -1.70 16 24 C -0.20 -2.30 6.43 -105.22 -0.68 -2.98 16 25 C 0.17 1.74 11.28 -17.17 -0.19 1.55 16 26 N -0.50 -5.18 10.34 -13.00 -0.13 -5.32 16 27 C 0.11 1.00 11.13 -17.53 -0.20 0.80 16 28 C -0.16 -1.47 10.13 -39.38 -0.40 -1.87 16 29 C 0.10 1.22 7.48 -38.13 -0.29 0.93 16 30 O -0.17 -2.26 8.12 3.72 0.03 -2.23 16 31 C 0.11 1.31 4.39 -1.56 -0.01 1.31 16 32 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.38 9.98 7.79 -40.82 -0.32 9.66 16 34 H 0.07 1.00 7.97 -51.93 -0.41 0.58 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.94 7.68 -51.93 -0.40 0.55 16 38 H 0.07 1.23 7.98 -51.93 -0.41 0.82 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.18 1.87 8.06 -52.48 -0.42 1.45 16 41 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 44 H 0.08 1.14 6.44 -51.93 -0.33 0.81 16 45 H 0.07 0.75 7.70 -51.92 -0.40 0.35 16 LS Contribution 366.25 15.07 5.52 5.52 Total: -1.00 -33.67 366.25 -9.36 -43.04 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.93 Total: 7.92 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -3.98 Total: -2.64 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.07 Total: -59.94 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.12 Total: -11.69 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.67 -9.36 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094955152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.779 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds