Wall clock time and date at job start Sat Apr 11 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00176 * 2 1 4 4 H 1.48499 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46674 * 299.99751 * 3 2 1 6 6 H 1.48500 * 109.47253 * 59.99228 * 3 2 1 7 7 C 1.38814 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99489 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99622 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.17744 * 35.45115 * 10 9 7 12 12 C 1.53035 * 109.32130 * 155.00045 * 10 9 7 13 13 C 1.53969 * 108.82788 * 175.67946 * 12 10 9 14 14 H 1.09002 * 112.99358 * 169.00978 * 13 12 10 15 15 C 1.55431 * 106.41436 * 293.82781 * 13 12 10 16 16 C 1.55167 * 100.35675 * 73.37270 * 15 13 12 17 17 H 1.08994 * 113.05279 * 162.98500 * 16 15 13 18 18 C 1.52981 * 109.32815 * 275.89289 * 10 9 7 19 19 N 1.47792 * 104.25115 * 40.55301 * 16 15 13 20 20 C 1.34779 * 125.85683 * 153.54630 * 19 16 15 21 21 O 1.21654 * 119.99624 * 359.97438 * 20 19 16 22 22 C 1.46982 * 120.00095 * 179.97438 * 20 19 16 23 23 C 1.35840 * 125.12060 * 179.97438 * 22 20 19 24 24 C 1.46099 * 106.07275 * 180.02562 * 23 22 20 25 25 C 1.39443 * 135.08019 * 179.97438 * 24 23 22 26 26 N 1.31679 * 120.07510 * 179.97438 * 25 24 23 27 27 C 1.32298 * 122.14529 * 0.02562 * 26 25 24 28 28 C 1.37755 * 121.58487 * 0.02562 * 27 26 25 29 29 C 1.39246 * 118.95161 * 359.97438 * 28 27 26 30 30 O 1.34277 * 134.37801 * 180.35191 * 29 28 27 31 31 C 1.49348 * 108.54237 * 333.48744 * 19 16 15 32 32 H 0.97004 * 120.00009 * 0.02562 * 1 2 3 33 33 H 0.96995 * 120.00430 * 0.02562 * 9 7 2 34 34 H 1.09002 * 109.57481 * 55.87744 * 12 10 9 35 35 H 1.09000 * 109.57876 * 295.48448 * 12 10 9 36 36 H 1.08998 * 111.23553 * 192.01790 * 15 13 12 37 37 H 1.09001 * 111.23305 * 316.46105 * 15 13 12 38 38 H 1.09003 * 109.53257 * 304.52579 * 18 10 9 39 39 H 1.09000 * 109.53387 * 64.75482 * 18 10 9 40 40 H 1.08007 * 126.96570 * 0.02875 * 23 22 20 41 41 H 1.08001 * 119.96217 * 359.97438 * 25 24 23 42 42 H 1.08005 * 119.21242 * 180.02562 * 27 26 25 43 43 H 1.07994 * 120.52671 * 180.02562 * 28 27 26 44 44 H 1.09004 * 110.06375 * 242.41614 * 31 19 16 45 45 H 1.09008 * 110.98665 * 120.41378 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9634 -3.5476 0.5977 12 6 1.1777 -4.7498 0.6109 13 6 1.9147 -6.0975 0.5063 14 1 1.4394 -6.8888 1.0861 15 6 2.0164 -6.4261 -1.0094 16 6 3.1048 -5.4087 -1.4430 17 1 3.5534 -5.6485 -2.4069 18 6 2.4395 -4.0212 -1.4354 19 7 4.0884 -5.4362 -0.3402 20 6 5.3993 -5.1408 -0.4441 21 8 5.8665 -4.8169 -1.5196 22 6 6.2645 -5.2099 0.7421 23 6 7.5948 -4.9358 0.7562 24 6 8.0343 -5.1348 2.1352 25 6 9.2496 -5.0243 2.8099 26 7 9.3142 -5.2819 4.0997 27 6 8.2524 -5.6496 4.7980 28 6 7.0137 -5.7844 4.2106 29 6 6.8817 -5.5257 2.8488 30 8 5.8557 -5.5515 1.9830 31 6 3.3860 -5.8455 0.9126 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3881 -0.0002 34 1 0.2350 -4.8058 0.0665 35 1 0.9836 -4.5199 1.6585 36 1 2.3339 -7.4565 -1.1696 37 1 1.0765 -6.2207 -1.5218 38 1 1.5437 -4.0433 -2.0561 39 1 3.1370 -3.2804 -1.8264 40 1 8.2043 -4.6321 -0.0822 41 1 10.1390 -4.7271 2.2741 42 1 8.3592 -5.8489 5.8542 43 1 6.1582 -6.0852 4.7971 44 1 3.4369 -5.0435 1.6490 45 1 3.8203 -6.7570 1.3236 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094955152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:02 Heat of formation + Delta-G solvation = 13.207120 kcal Electronic energy + Delta-G solvation = -30039.918059 eV Core-core repulsion = 26023.578418 eV Total energy + Delta-G solvation = -4016.339641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.86606 -41.95776 -40.12030 -39.53655 -36.59480 -34.34553 -34.10547 -33.00312 -32.73001 -32.08421 -30.82397 -29.57412 -27.03125 -26.01384 -25.68875 -24.54722 -23.46421 -22.52110 -22.48253 -21.04972 -20.41770 -19.28622 -19.13411 -18.97765 -17.86957 -17.34185 -17.07736 -16.75758 -16.39961 -16.27439 -16.02303 -15.54069 -15.44690 -15.10738 -14.81778 -14.57197 -14.50374 -14.44219 -14.22883 -14.00850 -13.66805 -13.53780 -13.24954 -12.98283 -12.88503 -12.83649 -12.65384 -12.31088 -12.17548 -12.00307 -11.68093 -11.54140 -11.52640 -11.36310 -11.04081 -10.88796 -10.81185 -10.56422 -9.92274 -9.48063 -9.04364 -8.01385 -5.28624 -0.71137 0.10492 0.57472 1.12061 1.38782 1.39707 1.49183 1.74966 1.91297 2.48839 2.65873 2.98481 3.29422 3.30719 3.40135 3.47479 3.57579 3.68404 3.72782 3.80383 4.04158 4.08196 4.16728 4.22319 4.27083 4.33055 4.38864 4.53849 4.57215 4.59606 4.64340 4.70998 4.76705 4.82192 4.84624 4.97095 5.00680 5.08863 5.17712 5.21498 5.28453 5.34229 5.41194 5.47806 5.52854 5.70372 6.21666 6.22957 6.74903 6.82912 7.28598 8.05244 8.29225 9.21683 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009863 B = 0.003713 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.074209 B = 7538.316124 C = 8941.115460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.067 4.067 3 Si 0.962 3.038 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.238 4.238 8 H 0.056 0.944 9 N -0.735 5.735 10 C 0.176 3.824 11 H 0.025 0.975 12 C -0.115 4.115 13 C -0.082 4.082 14 H 0.144 0.856 15 C -0.111 4.111 16 C 0.134 3.866 17 H 0.096 0.904 18 C -0.135 4.135 19 N -0.598 5.598 20 C 0.603 3.397 21 O -0.556 6.556 22 C -0.039 4.039 23 C -0.093 4.093 24 C -0.216 4.216 25 C 0.176 3.824 26 N -0.511 5.511 27 C 0.122 3.878 28 C -0.161 4.161 29 C 0.084 3.916 30 O -0.177 6.177 31 C 0.104 3.896 32 H 0.252 0.748 33 H 0.375 0.625 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.018 0.982 40 H 0.186 0.814 41 H 0.191 0.809 42 H 0.206 0.794 43 H 0.173 0.827 44 H 0.062 0.938 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.748 -20.664 7.514 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.791 3.209 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.370 4.370 8 H 0.074 0.926 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.043 0.957 12 C -0.153 4.153 13 C -0.100 4.100 14 H 0.162 0.838 15 C -0.149 4.149 16 C 0.032 3.968 17 H 0.114 0.886 18 C -0.176 4.176 19 N -0.329 5.329 20 C 0.391 3.609 21 O -0.437 6.437 22 C -0.088 4.088 23 C -0.115 4.115 24 C -0.219 4.219 25 C 0.012 3.988 26 N -0.221 5.221 27 C -0.027 4.027 28 C -0.181 4.181 29 C 0.028 3.972 30 O -0.077 6.077 31 C -0.017 4.017 32 H 0.061 0.939 33 H 0.208 0.792 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.037 0.963 40 H 0.203 0.797 41 H 0.207 0.793 42 H 0.222 0.778 43 H 0.191 0.809 44 H 0.081 0.919 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.635 -20.356 7.518 25.110 hybrid contribution -0.675 1.762 -0.869 2.077 sum 11.960 -18.594 6.649 23.087 Atomic orbital electron populations 1.69783 1.06153 1.25965 1.59402 1.25392 0.96343 1.00476 1.03738 0.85250 0.77840 0.80636 0.77144 1.20279 1.21624 1.21365 1.19425 0.90576 0.85795 1.41214 0.92621 1.42598 1.05432 1.00829 1.88624 1.20454 0.93930 0.85598 0.93217 0.95703 1.22053 0.98726 0.93623 1.00912 1.22690 0.92633 0.97405 0.97310 0.83818 1.23053 0.98134 0.98614 0.95100 1.22470 0.88117 0.95815 0.90423 0.88554 1.22654 0.99455 0.95452 1.00085 1.49202 1.06334 1.64580 1.12830 1.16495 0.81052 0.77859 0.85479 1.90851 1.74646 1.50740 1.27506 1.21881 0.94795 1.08476 0.83688 1.22922 0.92920 0.98991 0.96712 1.21085 0.97243 1.09340 0.94220 1.22869 0.95493 0.90841 0.89562 1.67902 1.32808 1.13865 1.07555 1.23269 0.85809 0.91940 1.01717 1.21455 1.01969 1.05861 0.88777 1.20450 0.85462 0.98086 0.93169 1.84050 1.35151 1.72297 1.16218 1.22863 0.93044 1.00654 0.85120 0.93852 0.79247 0.90785 0.91942 0.87939 0.88192 0.91037 0.96273 0.79724 0.79250 0.77778 0.80918 0.91931 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.20 13.06 21.65 0.28 -58.92 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 3 Si 0.96 47.98 29.55 68.60 2.03 50.01 16 4 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 5 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 7 C -0.24 -13.83 9.91 84.03 0.83 -13.00 16 8 H 0.06 3.30 7.83 -2.91 -0.02 3.28 16 9 N -0.74 -37.58 5.11 -322.90 -1.65 -39.24 16 10 C 0.18 6.95 2.38 45.00 0.11 7.06 16 11 H 0.02 1.09 5.90 -2.38 -0.01 1.08 16 12 C -0.12 -3.28 4.93 30.93 0.15 -3.12 16 13 C -0.08 -1.57 4.27 -9.05 -0.04 -1.61 16 14 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 15 C -0.11 -2.08 6.22 32.17 0.20 -1.88 16 16 C 0.13 3.79 3.99 45.78 0.18 3.97 16 17 H 0.10 2.74 8.01 -2.39 -0.02 2.72 16 18 C -0.14 -5.01 5.27 30.89 0.16 -4.85 16 19 N -0.60 -17.52 2.39 -782.72 -1.87 -19.39 16 20 C 0.60 20.08 7.84 86.53 0.68 20.76 16 21 O -0.56 -21.75 17.08 -4.20 -0.07 -21.82 16 22 C -0.04 -1.13 6.91 24.01 0.17 -0.97 16 23 C -0.09 -2.36 10.80 23.75 0.26 -2.10 16 24 C -0.22 -4.87 6.43 -20.25 -0.13 -5.00 16 25 C 0.18 3.26 11.28 85.01 0.96 4.22 16 26 N -0.51 -9.53 10.34 -195.04 -2.02 -11.55 16 27 C 0.12 1.76 11.13 84.51 0.94 2.70 16 28 C -0.16 -2.59 10.13 22.40 0.23 -2.36 16 29 C 0.08 1.92 7.48 23.21 0.17 2.09 16 30 O -0.18 -4.61 8.12 -9.62 -0.08 -4.69 16 31 C 0.10 2.42 4.39 86.41 0.38 2.80 16 32 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.38 20.11 7.79 -92.71 -0.72 19.39 16 34 H 0.07 2.05 7.97 -2.39 -0.02 2.03 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.10 1.75 7.68 -2.39 -0.02 1.73 16 38 H 0.07 2.58 7.98 -2.39 -0.02 2.56 16 39 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.19 4.07 8.06 -2.91 -0.02 4.05 16 41 H 0.19 2.36 8.06 -2.91 -0.02 2.33 16 42 H 0.21 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 44 H 0.06 1.72 6.44 -2.38 -0.02 1.71 16 45 H 0.10 1.78 7.70 -2.38 -0.02 1.76 16 Total: -1.00 -77.11 366.25 2.64 -74.46 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.31 Total: 25.90 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 5.72 Total: 5.23 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -5.26 Total: -129.09 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.15 Total: -26.51 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -77.11 2.64 -74.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094955152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.671 kcal (2) G-P(sol) polarization free energy of solvation -77.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds