Wall clock time and date at job start Sat Apr 11 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99899 * 2 1 4 4 H 1.48504 * 109.47346 * 270.00024 * 3 2 1 5 5 H 1.48505 * 109.47092 * 30.00186 * 3 2 1 6 6 H 1.48498 * 109.47475 * 149.99985 * 3 2 1 7 7 C 1.37873 * 120.00426 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99488 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00349 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47038 * 184.50921 * 9 7 2 11 11 C 1.46908 * 110.99792 * 299.60120 * 10 9 7 12 12 C 1.50696 * 109.46876 * 287.97190 * 11 10 9 13 13 C 1.38679 * 120.42170 * 275.75977 * 12 11 10 14 14 C 1.38624 * 118.42228 * 179.78622 * 13 12 11 15 15 C 1.38229 * 119.15919 * 0.51770 * 14 13 12 16 16 N 1.31848 * 120.76662 * 359.72888 * 15 14 13 17 17 C 1.31894 * 121.72357 * 359.97438 * 16 15 14 18 18 C 1.46890 * 111.00296 * 63.55861 * 10 9 7 19 19 C 1.50702 * 109.47376 * 66.04614 * 18 10 9 20 20 C 1.38051 * 120.39544 * 269.97931 * 19 18 10 21 21 N 1.31908 * 120.99786 * 180.09172 * 20 19 18 22 22 C 1.32432 * 121.83381 * 0.02562 * 21 20 19 23 23 C 1.39149 * 120.24931 * 359.84991 * 22 21 20 24 24 C 1.38784 * 120.39346 * 89.99667 * 19 18 10 25 25 O 1.35959 * 121.07021 * 180.22182 * 23 22 21 26 26 C 1.43222 * 116.64359 * 342.92086 * 25 23 22 27 27 C 1.53468 * 108.19612 * 45.93632 * 26 25 23 28 28 O 1.35990 * 119.24942 * 179.61284 * 22 21 20 29 29 H 0.96999 * 119.99852 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47085 * 64.50547 * 9 7 2 31 31 H 1.09004 * 109.46982 * 304.50243 * 9 7 2 32 32 H 1.08997 * 109.46816 * 47.96813 * 11 10 9 33 33 H 1.08997 * 109.46664 * 167.97368 * 11 10 9 34 34 H 1.08005 * 120.78241 * 0.03234 * 13 12 11 35 35 H 1.08002 * 120.41745 * 180.22266 * 14 13 12 36 36 H 1.08002 * 119.61340 * 179.74312 * 15 14 13 37 37 H 1.07999 * 119.61139 * 180.02562 * 17 16 15 38 38 H 1.09002 * 109.47225 * 306.04543 * 18 10 9 39 39 H 1.09005 * 109.47338 * 186.04898 * 18 10 9 40 40 H 1.07994 * 119.49947 * 0.06338 * 20 19 18 41 41 H 1.07994 * 120.78887 * 359.97438 * 24 19 18 42 42 H 1.08999 * 109.72156 * 165.60646 * 26 25 23 43 43 H 1.09001 * 109.71685 * 286.25621 * 26 25 23 44 44 H 1.08997 * 109.69682 * 180.57041 * 27 26 25 45 45 H 1.08996 * 109.69426 * 59.97623 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0012 -2.5746 -0.1105 11 6 3.5384 -3.3885 1.0215 12 6 4.2788 -2.9809 2.2691 13 6 5.5267 -3.5158 2.5516 14 6 6.1728 -3.1083 3.7083 15 6 5.5515 -2.1969 4.5415 16 7 4.3618 -1.7129 4.2437 17 6 3.7204 -2.0735 3.1490 18 6 3.6005 -3.1756 -1.3896 19 6 4.2930 -2.4590 -2.5201 20 6 3.7033 -1.3633 -3.1180 21 7 4.2979 -0.7284 -4.1096 22 6 5.4781 -1.1088 -4.5747 23 6 6.1314 -2.2037 -4.0173 24 6 5.5311 -2.8930 -2.9728 25 8 7.3454 -2.6060 -4.4787 26 6 7.7372 -2.1170 -5.7666 27 6 7.4423 -0.6118 -5.8177 28 8 6.0398 -0.4207 -5.6044 29 1 -0.4850 0.8401 -0.0004 30 1 3.8753 -0.7518 0.9264 31 1 3.8746 -0.6116 -0.8481 32 1 2.4692 -3.2342 1.1668 33 1 3.7288 -4.4415 0.8137 34 1 5.9859 -4.2299 1.8840 35 1 7.1473 -3.5015 3.9579 36 1 6.0464 -1.8776 5.4467 37 1 2.7473 -1.6551 2.9384 38 1 2.5209 -3.0868 -1.5103 39 1 3.8819 -4.2286 -1.4003 40 1 2.7403 -1.0212 -2.7689 41 1 6.0156 -3.7472 -2.5235 42 1 8.8032 -2.2881 -5.9162 43 1 7.1693 -2.6297 -6.5430 44 1 7.7226 -0.2155 -6.7936 45 1 8.0056 -0.1004 -5.0373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139730863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:41 Heat of formation + Delta-G solvation = 19.967789 kcal Electronic energy + Delta-G solvation = -29693.911777 eV Core-core repulsion = 25677.865301 eV Total energy + Delta-G solvation = -4016.046476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.37099 -39.83326 -38.85000 -37.33202 -36.82595 -32.87636 -32.68198 -31.82464 -31.54068 -30.79897 -28.86859 -27.97892 -26.31727 -24.82933 -23.78993 -23.40463 -23.12283 -22.03946 -20.82989 -19.67299 -18.65795 -17.79004 -17.43034 -16.95234 -16.62375 -15.90774 -15.70422 -15.41424 -15.04962 -15.00545 -14.76072 -14.46150 -14.34012 -14.18903 -13.97752 -13.41256 -13.26865 -13.06046 -12.77618 -12.68774 -12.45675 -12.10866 -11.69576 -11.60490 -11.57372 -11.32994 -11.25921 -11.03501 -10.93054 -10.80883 -10.35853 -10.01434 -9.64059 -9.42716 -9.22869 -9.05921 -9.02790 -8.64977 -8.60270 -7.99976 -7.35887 -6.18227 -4.19736 1.27900 1.45199 1.52040 1.66929 2.75632 3.03669 3.29240 3.37050 3.42368 3.92825 4.02792 4.19004 4.36547 4.50608 4.59589 4.70255 4.81432 4.93506 5.00006 5.11423 5.13916 5.16882 5.24659 5.27105 5.31944 5.35327 5.40779 5.49371 5.57443 5.80591 5.90892 5.94371 5.97383 6.21858 6.36125 6.41112 6.41246 6.47514 6.70870 6.74862 6.76584 6.81961 7.04462 7.13176 7.29836 7.44099 7.85399 7.87272 8.23764 8.33613 8.37543 8.81854 9.45200 10.93329 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009705 B = 0.004089 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.277867 B = 6845.499234 C = 8611.952677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.084 3.916 3 Si 0.862 3.138 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.556 4.556 8 H 0.079 0.921 9 C 0.148 3.852 10 N -0.525 5.525 11 C 0.095 3.905 12 C -0.108 4.108 13 C -0.063 4.063 14 C -0.184 4.184 15 C 0.083 3.917 16 N -0.490 5.490 17 C 0.117 3.883 18 C 0.102 3.898 19 C -0.106 4.106 20 C 0.132 3.868 21 N -0.471 5.471 22 C 0.248 3.752 23 C -0.003 4.003 24 C -0.058 4.058 25 O -0.306 6.306 26 C 0.020 3.980 27 C 0.026 3.974 28 O -0.299 6.299 29 H 0.265 0.735 30 H 0.029 0.971 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.164 0.836 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.180 0.820 41 H 0.143 0.857 42 H 0.121 0.879 43 H 0.077 0.923 44 H 0.124 0.876 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.317 -8.310 -5.443 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.120 4.120 3 Si 0.689 3.311 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.595 4.595 8 H 0.097 0.903 9 C 0.021 3.979 10 N -0.248 5.248 11 C -0.033 4.033 12 C -0.110 4.110 13 C -0.090 4.090 14 C -0.204 4.204 15 C -0.074 4.074 16 N -0.199 5.199 17 C -0.041 4.041 18 C -0.026 4.026 19 C -0.109 4.109 20 C -0.025 4.025 21 N -0.190 5.190 22 C 0.069 3.931 23 C -0.051 4.051 24 C -0.085 4.085 25 O -0.220 6.220 26 C -0.056 4.056 27 C -0.050 4.050 28 O -0.209 6.209 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.163 0.837 37 H 0.181 0.819 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.197 0.803 41 H 0.161 0.839 42 H 0.139 0.861 43 H 0.095 0.905 44 H 0.142 0.858 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.975 -6.853 -5.324 17.308 hybrid contribution 0.633 -0.111 -0.398 0.756 sum 15.608 -6.965 -5.722 18.024 Atomic orbital electron populations 1.69896 1.06241 1.27208 1.49389 1.24839 0.94510 0.98820 0.93848 0.87033 0.80650 0.84256 0.79151 1.19620 1.21149 1.18981 1.21543 0.90190 0.94605 1.53138 0.90294 1.20286 0.94786 0.85553 0.97231 1.62530 1.58730 1.04051 0.99513 1.20908 0.98599 0.95905 0.87909 1.20850 0.95492 0.97498 0.97163 1.21422 0.93813 0.98135 0.95631 1.22021 1.01227 1.00624 0.96562 1.22645 0.91722 0.94126 0.98939 1.67728 1.08842 1.24394 1.18910 1.23012 0.99928 0.92574 0.88536 1.20824 0.98886 0.95822 0.87073 1.20638 0.94393 0.97661 0.98171 1.22860 0.99986 0.90858 0.88827 1.66935 1.08123 1.30677 1.13285 1.19420 0.92477 0.89757 0.91472 1.19600 0.88689 0.96516 1.00256 1.20744 0.93641 0.99494 0.94603 1.86266 1.31655 1.69810 1.34257 1.23618 1.02844 0.94406 0.84687 1.23670 0.80138 0.96714 1.04503 1.86183 1.23431 1.65271 1.45974 0.92485 0.95257 0.95447 0.91072 0.91476 0.85340 0.85614 0.83651 0.81912 0.91213 0.91220 0.80347 0.83937 0.86072 0.90503 0.85798 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 13.96 55.43 0.77 -24.56 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.86 21.12 27.38 -169.99 -4.65 16.47 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.48 6.67 56.52 0.38 -6.11 16 7 C -0.56 -13.65 7.76 -34.44 -0.27 -13.92 16 8 H 0.08 2.06 6.19 -52.49 -0.33 1.73 16 9 C 0.15 3.25 3.64 -4.98 -0.02 3.23 16 10 N -0.53 -9.52 4.65 -238.97 -1.11 -10.63 16 11 C 0.09 1.57 4.97 -4.97 -0.02 1.54 16 12 C -0.11 -1.78 4.91 -104.48 -0.51 -2.29 16 13 C -0.06 -0.90 9.88 -39.28 -0.39 -1.29 16 14 C -0.18 -2.41 10.11 -39.44 -0.40 -2.81 16 15 C 0.08 1.20 11.18 -17.55 -0.20 1.01 16 16 N -0.49 -8.75 10.36 -13.25 -0.14 -8.89 16 17 C 0.12 2.14 9.72 -17.55 -0.17 1.97 16 18 C 0.10 1.68 4.96 -4.98 -0.02 1.65 16 19 C -0.11 -1.79 4.90 -104.49 -0.51 -2.30 16 20 C 0.13 2.52 9.08 -17.59 -0.16 2.36 16 21 N -0.47 -9.32 10.38 -13.17 -0.14 -9.46 16 22 C 0.25 4.34 7.55 -16.95 -0.13 4.21 16 23 C 0.00 -0.06 6.50 -39.04 -0.25 -0.31 16 24 C -0.06 -0.90 9.78 -39.17 -0.38 -1.28 16 25 O -0.31 -4.06 10.43 -32.36 -0.34 -4.40 16 26 C 0.02 0.18 7.27 37.40 0.27 0.45 16 27 C 0.03 0.26 7.25 37.40 0.27 0.53 16 28 O -0.30 -4.62 10.51 -32.46 -0.34 -4.96 16 29 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.03 0.70 6.02 -51.93 -0.31 0.38 16 31 H 0.03 0.64 5.10 -51.93 -0.27 0.37 16 32 H 0.07 1.33 6.03 -51.93 -0.31 1.01 16 33 H 0.07 0.93 7.79 -51.93 -0.40 0.53 16 34 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.16 3.22 8.06 -52.49 -0.42 2.79 16 38 H 0.07 1.27 6.58 -51.93 -0.34 0.93 16 39 H 0.07 0.95 7.81 -51.93 -0.41 0.54 16 40 H 0.18 3.66 7.85 -52.49 -0.41 3.25 16 41 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -31.72 368.01 -9.13 -40.86 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.74 Total: 5.13 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -2.99 Total: -5.10 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.61 Total: -53.54 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.68 Total: -9.36 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.65 Total: 16.47 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.72 -9.13 -40.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139730863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.826 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds