Wall clock time and date at job start Sat Apr 11 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99899 * 2 1 4 4 H 1.48504 * 109.47346 * 270.00024 * 3 2 1 5 5 H 1.48505 * 109.47092 * 30.00186 * 3 2 1 6 6 H 1.48498 * 109.47475 * 149.99985 * 3 2 1 7 7 C 1.37873 * 120.00426 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99488 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00349 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47038 * 184.50921 * 9 7 2 11 11 C 1.46908 * 110.99792 * 299.60120 * 10 9 7 12 12 C 1.50696 * 109.46876 * 287.97190 * 11 10 9 13 13 C 1.38679 * 120.42170 * 275.75977 * 12 11 10 14 14 C 1.38624 * 118.42228 * 179.78622 * 13 12 11 15 15 C 1.38229 * 119.15919 * 0.51770 * 14 13 12 16 16 N 1.31848 * 120.76662 * 359.72888 * 15 14 13 17 17 C 1.31894 * 121.72357 * 359.97438 * 16 15 14 18 18 C 1.46890 * 111.00296 * 63.55861 * 10 9 7 19 19 C 1.50702 * 109.47376 * 66.04614 * 18 10 9 20 20 C 1.38051 * 120.39544 * 269.97931 * 19 18 10 21 21 N 1.31908 * 120.99786 * 180.09172 * 20 19 18 22 22 C 1.32432 * 121.83381 * 0.02562 * 21 20 19 23 23 C 1.39149 * 120.24931 * 359.84991 * 22 21 20 24 24 C 1.38784 * 120.39346 * 89.99667 * 19 18 10 25 25 O 1.35959 * 121.07021 * 180.22182 * 23 22 21 26 26 C 1.43222 * 116.64359 * 342.92086 * 25 23 22 27 27 C 1.53468 * 108.19612 * 45.93632 * 26 25 23 28 28 O 1.35990 * 119.24942 * 179.61284 * 22 21 20 29 29 H 0.96999 * 119.99852 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47085 * 64.50547 * 9 7 2 31 31 H 1.09004 * 109.46982 * 304.50243 * 9 7 2 32 32 H 1.08997 * 109.46816 * 47.96813 * 11 10 9 33 33 H 1.08997 * 109.46664 * 167.97368 * 11 10 9 34 34 H 1.08005 * 120.78241 * 0.03234 * 13 12 11 35 35 H 1.08002 * 120.41745 * 180.22266 * 14 13 12 36 36 H 1.08002 * 119.61340 * 179.74312 * 15 14 13 37 37 H 1.07999 * 119.61139 * 180.02562 * 17 16 15 38 38 H 1.09002 * 109.47225 * 306.04543 * 18 10 9 39 39 H 1.09005 * 109.47338 * 186.04898 * 18 10 9 40 40 H 1.07994 * 119.49947 * 0.06338 * 20 19 18 41 41 H 1.07994 * 120.78887 * 359.97438 * 24 19 18 42 42 H 1.08999 * 109.72156 * 165.60646 * 26 25 23 43 43 H 1.09001 * 109.71685 * 286.25621 * 26 25 23 44 44 H 1.08997 * 109.69682 * 180.57041 * 27 26 25 45 45 H 1.08996 * 109.69426 * 59.97623 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0012 -2.5746 -0.1105 11 6 3.5384 -3.3885 1.0215 12 6 4.2788 -2.9809 2.2691 13 6 5.5267 -3.5158 2.5516 14 6 6.1728 -3.1083 3.7083 15 6 5.5515 -2.1969 4.5415 16 7 4.3618 -1.7129 4.2437 17 6 3.7204 -2.0735 3.1490 18 6 3.6005 -3.1756 -1.3896 19 6 4.2930 -2.4590 -2.5201 20 6 3.7033 -1.3633 -3.1180 21 7 4.2979 -0.7284 -4.1096 22 6 5.4781 -1.1088 -4.5747 23 6 6.1314 -2.2037 -4.0173 24 6 5.5311 -2.8930 -2.9728 25 8 7.3454 -2.6060 -4.4787 26 6 7.7372 -2.1170 -5.7666 27 6 7.4423 -0.6118 -5.8177 28 8 6.0398 -0.4207 -5.6044 29 1 -0.4850 0.8401 -0.0004 30 1 3.8753 -0.7518 0.9264 31 1 3.8746 -0.6116 -0.8481 32 1 2.4692 -3.2342 1.1668 33 1 3.7288 -4.4415 0.8137 34 1 5.9859 -4.2299 1.8840 35 1 7.1473 -3.5015 3.9579 36 1 6.0464 -1.8776 5.4467 37 1 2.7473 -1.6551 2.9384 38 1 2.5209 -3.0868 -1.5103 39 1 3.8819 -4.2286 -1.4003 40 1 2.7403 -1.0212 -2.7689 41 1 6.0156 -3.7472 -2.5235 42 1 8.8032 -2.2881 -5.9162 43 1 7.1693 -2.6297 -6.5430 44 1 7.7226 -0.2155 -6.7936 45 1 8.0056 -0.1004 -5.0373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139730863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:41 Heat of formation + Delta-G solvation = -4.293327 kcal Electronic energy + Delta-G solvation = -29694.963818 eV Core-core repulsion = 25677.865301 eV Total energy + Delta-G solvation = -4017.098517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.49479 -41.05348 -40.07029 -38.43971 -38.21865 -34.64818 -34.14120 -33.12709 -32.61424 -31.97946 -30.05860 -29.64712 -27.55657 -26.10424 -25.17722 -24.73673 -24.31514 -23.34631 -21.97601 -21.18851 -19.76966 -19.16858 -18.88945 -18.25820 -17.79687 -17.18910 -16.85719 -16.69549 -16.45929 -16.27947 -15.90055 -15.84782 -15.69923 -15.43170 -15.26737 -14.61333 -14.49988 -14.42595 -14.17728 -14.05905 -13.79011 -13.55298 -13.27842 -12.94557 -12.87991 -12.78791 -12.53927 -12.38079 -12.24583 -12.05935 -11.99023 -11.84365 -11.65225 -10.77845 -10.60976 -10.47194 -10.29522 -10.23909 -9.82472 -9.25612 -8.92724 -8.30728 -6.30437 -0.00103 0.19488 0.32831 0.51931 1.27074 1.32147 1.37953 1.71605 2.07705 2.29786 2.60826 2.97003 3.06985 3.10149 3.52363 3.55906 3.69405 3.80531 3.89018 3.99933 4.02093 4.05245 4.11626 4.15776 4.24950 4.28951 4.32588 4.48650 4.57370 4.65135 4.71473 4.74631 4.77039 4.97900 5.01451 5.05800 5.08282 5.14591 5.22130 5.32442 5.41700 5.49816 5.58679 5.64753 5.95195 6.09935 6.17852 6.31588 6.37674 6.76302 6.93941 7.17253 7.35917 8.84213 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009705 B = 0.004089 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.277867 B = 6845.499234 C = 8611.952677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.037 3.963 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.164 3.836 10 N -0.516 5.516 11 C 0.099 3.901 12 C -0.119 4.119 13 C -0.059 4.059 14 C -0.168 4.168 15 C 0.074 3.926 16 N -0.523 5.523 17 C 0.087 3.913 18 C 0.106 3.894 19 C -0.107 4.107 20 C 0.109 3.891 21 N -0.509 5.509 22 C 0.236 3.764 23 C 0.008 3.992 24 C -0.051 4.051 25 O -0.309 6.309 26 C 0.016 3.984 27 C 0.016 3.984 28 O -0.322 6.322 29 H 0.263 0.737 30 H 0.014 0.986 31 H 0.018 0.982 32 H 0.039 0.961 33 H 0.106 0.894 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.177 0.823 37 H 0.127 0.873 38 H 0.043 0.957 39 H 0.112 0.888 40 H 0.148 0.852 41 H 0.176 0.824 42 H 0.166 0.834 43 H 0.085 0.915 44 H 0.163 0.837 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.244 -10.653 -5.930 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.163 4.163 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.077 0.923 9 C 0.036 3.964 10 N -0.238 5.238 11 C -0.029 4.029 12 C -0.121 4.121 13 C -0.085 4.085 14 C -0.188 4.188 15 C -0.083 4.083 16 N -0.232 5.232 17 C -0.070 4.070 18 C -0.022 4.022 19 C -0.110 4.110 20 C -0.048 4.048 21 N -0.229 5.229 22 C 0.056 3.944 23 C -0.040 4.040 24 C -0.077 4.077 25 O -0.222 6.222 26 C -0.059 4.059 27 C -0.059 4.059 28 O -0.232 6.232 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.036 0.964 32 H 0.057 0.943 33 H 0.124 0.876 34 H 0.179 0.821 35 H 0.188 0.812 36 H 0.194 0.806 37 H 0.145 0.855 38 H 0.062 0.938 39 H 0.130 0.870 40 H 0.165 0.835 41 H 0.193 0.807 42 H 0.183 0.817 43 H 0.103 0.897 44 H 0.180 0.820 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 19.923 -9.205 -5.822 22.706 hybrid contribution -0.694 0.538 -0.321 0.935 sum 19.229 -8.666 -6.143 21.968 Atomic orbital electron populations 1.69995 1.07474 1.27541 1.52370 1.25402 0.94921 1.01337 0.94613 0.86296 0.79718 0.81838 0.78643 1.20025 1.21155 1.18748 1.21716 0.91775 0.93292 1.49752 0.92347 1.19944 0.92396 0.88267 0.95760 1.62504 1.58040 1.02377 1.00904 1.20926 0.96825 0.97597 0.87559 1.20814 0.96871 0.97808 0.96654 1.21793 0.92425 0.97907 0.96413 1.22477 1.02377 0.98817 0.95107 1.23267 0.90663 0.94103 1.00291 1.67636 1.10738 1.25746 1.19087 1.22635 0.99507 0.94533 0.90279 1.20881 0.97440 0.97898 0.86000 1.20583 0.95255 0.97011 0.98133 1.22473 0.99632 0.92508 0.90168 1.66768 1.09925 1.32010 1.14198 1.19606 0.92116 0.90633 0.92013 1.19597 0.89264 0.95443 0.99664 1.21004 0.92660 0.99916 0.94113 1.86264 1.29893 1.69758 1.36310 1.24051 1.05487 0.93475 0.82868 1.24157 0.77239 0.97836 1.06687 1.86159 1.26485 1.65463 1.45132 0.92730 0.96811 0.96419 0.94290 0.87617 0.82104 0.81243 0.80630 0.85505 0.93831 0.86971 0.83476 0.80700 0.81671 0.89681 0.81955 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.96 21.45 0.30 -55.98 16 2 C 0.04 2.07 5.47 84.65 0.46 2.54 16 3 Si 0.91 45.79 27.38 68.60 1.88 47.66 16 4 H -0.27 -13.90 7.11 99.48 0.71 -13.19 16 5 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 6 H -0.26 -13.03 6.67 99.48 0.66 -12.37 16 7 C -0.53 -27.38 7.76 25.60 0.20 -27.18 16 8 H 0.06 3.25 6.19 -2.91 -0.02 3.24 16 9 C 0.16 7.43 3.64 85.56 0.31 7.74 16 10 N -0.52 -18.36 4.65 -909.95 -4.23 -22.59 16 11 C 0.10 3.20 4.97 85.55 0.42 3.62 16 12 C -0.12 -3.82 4.91 -19.77 -0.10 -3.92 16 13 C -0.06 -1.45 9.88 22.47 0.22 -1.22 16 14 C -0.17 -3.66 10.11 22.36 0.23 -3.43 16 15 C 0.07 1.97 11.18 84.69 0.95 2.91 16 16 N -0.52 -18.74 10.36 -195.84 -2.03 -20.77 16 17 C 0.09 3.29 9.72 84.67 0.82 4.12 16 18 C 0.11 3.38 4.96 85.56 0.42 3.80 16 19 C -0.11 -3.57 4.90 -19.78 -0.10 -3.67 16 20 C 0.11 4.35 9.08 84.64 0.77 5.12 16 21 N -0.51 -20.84 10.38 -308.18 -3.20 -24.04 16 22 C 0.24 8.15 7.55 84.82 0.64 8.79 16 23 C 0.01 0.24 6.50 22.62 0.15 0.39 16 24 C -0.05 -1.42 9.78 22.53 0.22 -1.20 16 25 O -0.31 -7.01 10.43 -80.90 -0.84 -7.86 16 26 C 0.02 0.21 7.27 72.14 0.52 0.74 16 27 C 0.02 0.26 7.25 72.14 0.52 0.78 16 28 O -0.32 -9.61 10.51 -81.24 -0.85 -10.46 16 29 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.01 0.68 6.02 -2.39 -0.01 0.66 16 31 H 0.02 0.85 5.10 -2.38 -0.01 0.84 16 32 H 0.04 1.52 6.03 -2.39 -0.01 1.50 16 33 H 0.11 2.60 7.79 -2.39 -0.02 2.58 16 34 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 35 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.18 3.42 8.06 -2.91 -0.02 3.40 16 37 H 0.13 5.55 8.06 -2.91 -0.02 5.52 16 38 H 0.04 1.64 6.58 -2.39 -0.02 1.62 16 39 H 0.11 2.65 7.81 -2.38 -0.02 2.63 16 40 H 0.15 6.63 7.85 -2.91 -0.02 6.61 16 41 H 0.18 3.73 8.06 -2.91 -0.02 3.70 16 42 H 0.17 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -75.58 368.01 -1.33 -76.91 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.98 Total: 17.19 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 6.67 Total: -0.07 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -9.16 Total: -123.37 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -1.70 Total: -18.32 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.88 Total: 47.66 kcal Total: -75.58 -1.33 -76.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139730863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.613 kcal (2) G-P(sol) polarization free energy of solvation -75.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds