Wall clock time and date at job start Sat Apr 11 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99764 * 2 1 4 4 H 1.48500 * 109.46948 * 269.99299 * 3 2 1 5 5 H 1.48494 * 109.47619 * 29.99345 * 3 2 1 6 6 H 1.48503 * 109.47112 * 149.99978 * 3 2 1 7 7 C 1.37872 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00460 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99899 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00032 * 89.99783 * 10 9 7 12 12 C 1.50695 * 109.47313 * 90.00128 * 11 10 9 13 13 C 1.38678 * 120.41675 * 270.25293 * 12 11 10 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 11 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 C 1.34778 * 119.99626 * 269.99560 * 10 9 7 19 19 O 1.21284 * 119.99808 * 179.97438 * 18 10 9 20 20 C 1.50699 * 120.00222 * 359.97438 * 18 10 9 21 21 N 1.46504 * 109.46973 * 179.97438 * 20 18 10 22 22 C 1.39938 * 119.99938 * 179.97438 * 21 20 18 23 23 C 1.38861 * 120.01586 * 359.72943 * 22 21 20 24 24 C 1.38118 * 119.97737 * 179.74418 * 23 22 21 25 25 C 1.38699 * 120.01793 * 0.50213 * 24 23 22 26 26 O 1.35997 * 119.97922 * 179.74483 * 25 24 23 27 27 C 1.38699 * 120.03640 * 359.77490 * 25 24 23 28 28 C 1.38107 * 120.02281 * 359.97062 * 27 25 24 29 29 H 0.97003 * 120.00146 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47781 * 59.99756 * 9 7 2 31 31 H 1.09006 * 109.47155 * 299.99609 * 9 7 2 32 32 H 1.09001 * 109.46632 * 329.99937 * 11 10 9 33 33 H 1.08996 * 109.46728 * 209.99930 * 11 10 9 34 34 H 1.07994 * 120.78944 * 359.96926 * 13 12 11 35 35 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 36 36 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 37 37 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 38 38 H 1.08999 * 109.46849 * 299.99992 * 20 18 10 39 39 H 1.09002 * 109.47000 * 60.00232 * 20 18 10 40 40 H 0.96997 * 120.00028 * 0.02562 * 21 20 18 41 41 H 1.07999 * 120.01205 * 359.97438 * 23 22 21 42 42 H 1.07999 * 119.98997 * 180.23373 * 24 23 22 43 43 H 0.96698 * 114.00428 * 270.02570 * 26 25 24 44 44 H 1.08005 * 119.98745 * 179.97438 * 27 25 24 45 45 H 1.07999 * 120.01249 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 4.2445 -3.2667 -1.2660 12 6 5.6679 -3.0302 -1.7007 13 6 5.9869 -1.9411 -2.4976 14 6 7.3085 -1.7661 -2.8775 15 6 8.2586 -2.6736 -2.4480 16 7 7.9198 -3.6951 -1.6860 17 6 6.6726 -3.8927 -1.3055 18 6 4.2241 -3.2097 1.1700 19 8 4.6280 -4.3533 1.1710 20 6 3.9731 -2.4982 2.4745 21 7 4.2894 -3.3952 3.5888 22 6 4.1343 -2.9542 4.9078 23 6 3.6860 -1.6645 5.1608 24 6 3.5282 -1.2318 6.4629 25 6 3.8273 -2.0816 7.5176 26 8 3.6766 -1.6530 8.7994 27 6 4.2806 -3.3680 7.2656 28 6 4.4340 -3.8040 5.9642 29 1 -0.4850 0.8401 -0.0004 30 1 3.8746 -0.6799 0.8911 31 1 3.8752 -0.6804 -0.8889 32 1 3.5639 -2.8831 -2.0261 33 1 4.0775 -4.3358 -1.1349 34 1 5.2231 -1.2483 -2.8184 35 1 7.5923 -0.9315 -3.5014 36 1 9.2905 -2.5442 -2.7391 37 1 6.4331 -4.7410 -0.6815 38 1 4.6036 -1.6109 2.5316 39 1 2.9251 -2.2036 2.5319 40 1 4.6070 -4.2945 3.4123 41 1 3.4572 -1.0013 4.3397 42 1 3.1759 -0.2301 6.6600 43 1 4.4661 -1.2354 9.1700 44 1 4.5137 -4.0288 8.0874 45 1 4.7874 -4.8056 5.7682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144564779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:47 Heat of formation + Delta-G solvation = -7.417637 kcal Electronic energy + Delta-G solvation = -28809.523849 eV Core-core repulsion = 24792.289851 eV Total energy + Delta-G solvation = -4017.233997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.31580 -39.73519 -39.14370 -37.13007 -35.64819 -34.29911 -33.11345 -32.31965 -31.61904 -30.89368 -29.15177 -28.29743 -26.85676 -25.19320 -23.53248 -22.87770 -22.58308 -22.06788 -21.31751 -18.85682 -18.23442 -17.57597 -17.31961 -16.93537 -16.38079 -16.32309 -15.68622 -15.49220 -15.38651 -15.16559 -14.82078 -14.36568 -14.10035 -13.95855 -13.64221 -13.50932 -13.31283 -12.99340 -12.94543 -12.88618 -12.49148 -12.32863 -12.22051 -11.91115 -11.82886 -11.67853 -11.56769 -11.10419 -10.84160 -10.45169 -10.28619 -9.89862 -9.77725 -9.74129 -9.55365 -9.38816 -8.93409 -8.89336 -8.86219 -8.09323 -7.18039 -6.36082 -4.40290 1.13245 1.34410 1.48135 1.57809 2.96657 3.05196 3.12446 3.15472 3.25741 3.76735 3.83793 4.04466 4.12258 4.42716 4.51199 4.82231 4.92432 4.95538 4.98368 4.98638 5.06392 5.09767 5.13178 5.45098 5.46243 5.54342 5.63939 5.72955 5.78422 5.87726 5.89849 6.00225 6.08665 6.13118 6.19647 6.26257 6.38678 6.41991 6.44873 6.62624 6.77126 6.77687 6.98307 7.24491 7.36102 7.75837 7.81464 7.95361 8.03111 8.19731 8.51522 8.69825 9.21447 10.76048 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008161 B = 0.003678 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3429.955628 B = 7611.881770 C = 9967.571571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.081 3.919 3 Si 0.868 3.132 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.549 4.549 8 H 0.081 0.919 9 C 0.207 3.793 10 N -0.580 5.580 11 C 0.161 3.839 12 C -0.148 4.148 13 C -0.062 4.062 14 C -0.179 4.179 15 C 0.091 3.909 16 N -0.491 5.491 17 C 0.118 3.882 18 C 0.519 3.481 19 O -0.563 6.563 20 C 0.106 3.894 21 N -0.732 5.732 22 C 0.221 3.779 23 C -0.184 4.184 24 C -0.091 4.091 25 C 0.029 3.971 26 O -0.500 6.500 27 C -0.095 4.095 28 C -0.184 4.184 29 H 0.269 0.731 30 H 0.035 0.965 31 H 0.031 0.969 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.409 0.591 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.377 0.623 44 H 0.123 0.877 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.239 -1.544 3.648 12.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.124 4.124 3 Si 0.694 3.306 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.587 4.587 8 H 0.099 0.901 9 C 0.086 3.914 10 N -0.310 5.310 11 C 0.037 3.963 12 C -0.152 4.152 13 C -0.088 4.088 14 C -0.199 4.199 15 C -0.066 4.066 16 N -0.199 5.199 17 C -0.039 4.039 18 C 0.307 3.693 19 O -0.444 6.444 20 C -0.021 4.021 21 N -0.364 5.364 22 C 0.116 3.884 23 C -0.206 4.206 24 C -0.111 4.111 25 C -0.017 4.017 26 O -0.309 6.309 27 C -0.114 4.114 28 C -0.207 4.207 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.168 0.832 37 H 0.177 0.823 38 H 0.102 0.898 39 H 0.126 0.874 40 H 0.247 0.753 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.231 0.769 44 H 0.141 0.859 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.272 -2.674 3.661 13.082 hybrid contribution 0.128 1.718 -0.452 1.782 sum 12.399 -0.956 3.209 12.843 Atomic orbital electron populations 1.69875 1.06231 1.27441 1.48502 1.24855 0.94700 0.98832 0.94024 0.86979 0.80448 0.84111 0.79028 1.19815 1.20636 1.18867 1.21315 0.88668 0.95203 1.53520 0.90127 1.19904 0.96136 0.77507 0.97846 1.47855 1.63149 1.16017 1.03954 1.20189 0.90526 0.99055 0.86508 1.21429 0.98469 0.96481 0.98774 1.21636 0.96690 0.95896 0.94589 1.22116 0.94081 1.01235 1.02429 1.22736 0.99720 0.90365 0.93809 1.67732 1.20317 1.20474 1.11381 1.22870 0.87304 0.98278 0.95451 1.20289 0.76937 0.86334 0.85777 1.90586 1.48225 1.18106 1.87442 1.21149 1.03746 0.92848 0.84388 1.44534 1.73367 1.17198 1.01264 1.17852 0.93291 0.92859 0.84367 1.20674 1.07333 0.95514 0.97112 1.21159 0.98598 0.99517 0.91784 1.18180 1.06599 0.93277 0.83638 1.84903 1.40505 1.79998 1.25460 1.21062 0.98342 0.95663 0.96365 1.20429 1.08919 1.00144 0.91181 0.92123 0.94764 0.95067 0.88666 0.89192 0.84577 0.85001 0.83183 0.82338 0.89773 0.87374 0.75349 0.85266 0.85681 0.76916 0.85858 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.31 13.96 55.43 0.77 -23.53 16 2 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 18.42 27.47 -169.99 -4.67 13.75 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.26 -5.24 6.54 56.52 0.37 -4.87 16 7 C -0.55 -13.17 9.84 -34.44 -0.34 -13.51 16 8 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 9 C 0.21 4.07 4.03 -5.19 -0.02 4.04 16 10 N -0.58 -10.41 2.44 -176.43 -0.43 -10.84 16 11 C 0.16 2.55 5.56 -5.19 -0.03 2.52 16 12 C -0.15 -2.18 5.48 -104.48 -0.57 -2.76 16 13 C -0.06 -0.81 9.86 -39.28 -0.39 -1.20 16 14 C -0.18 -2.08 10.11 -39.44 -0.40 -2.47 16 15 C 0.09 1.12 11.18 -17.54 -0.20 0.93 16 16 N -0.49 -7.36 10.36 -13.25 -0.14 -7.49 16 17 C 0.12 1.80 10.86 -17.55 -0.19 1.61 16 18 C 0.52 9.34 7.74 -10.99 -0.09 9.26 16 19 O -0.56 -10.64 14.81 5.55 0.08 -10.56 16 20 C 0.11 1.75 3.95 -5.19 -0.02 1.73 16 21 N -0.73 -11.19 5.71 -59.76 -0.34 -11.53 16 22 C 0.22 3.24 6.66 -83.70 -0.56 2.68 16 23 C -0.18 -2.68 9.31 -39.39 -0.37 -3.04 16 24 C -0.09 -1.24 9.98 -39.46 -0.39 -1.63 16 25 C 0.03 0.38 6.70 -39.24 -0.26 0.12 16 26 O -0.50 -5.85 13.50 -19.73 -0.27 -6.12 16 27 C -0.10 -1.19 9.98 -39.46 -0.39 -1.58 16 28 C -0.18 -2.41 9.89 -39.40 -0.39 -2.80 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.03 0.66 5.50 -51.93 -0.29 0.38 16 31 H 0.03 0.59 7.50 -51.93 -0.39 0.20 16 32 H 0.10 1.47 8.03 -51.93 -0.42 1.05 16 33 H 0.09 1.42 7.37 -51.93 -0.38 1.04 16 34 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.16 2.46 7.62 -52.49 -0.40 2.06 16 38 H 0.08 1.31 7.20 -51.93 -0.37 0.93 16 39 H 0.11 1.95 7.82 -51.93 -0.41 1.54 16 40 H 0.41 6.21 7.45 -40.82 -0.30 5.90 16 41 H 0.13 1.88 6.73 -52.49 -0.35 1.53 16 42 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 43 H 0.38 2.55 9.06 45.56 0.41 2.96 16 44 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 45 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 384.60 15.07 5.80 5.80 Total: -1.00 -29.81 384.60 -8.92 -38.73 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -4.70 Total: -4.18 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.14 Total: -53.40 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.18 Total: -16.67 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.67 Total: 13.75 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.81 -8.92 -38.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144564779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.309 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds