Wall clock time and date at job start Sat Apr 11 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99764 * 2 1 4 4 H 1.48500 * 109.46948 * 269.99299 * 3 2 1 5 5 H 1.48494 * 109.47619 * 29.99345 * 3 2 1 6 6 H 1.48503 * 109.47112 * 149.99978 * 3 2 1 7 7 C 1.37872 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00460 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99899 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00032 * 89.99783 * 10 9 7 12 12 C 1.50695 * 109.47313 * 90.00128 * 11 10 9 13 13 C 1.38678 * 120.41675 * 270.25293 * 12 11 10 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 11 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 C 1.34778 * 119.99626 * 269.99560 * 10 9 7 19 19 O 1.21284 * 119.99808 * 179.97438 * 18 10 9 20 20 C 1.50699 * 120.00222 * 359.97438 * 18 10 9 21 21 N 1.46504 * 109.46973 * 179.97438 * 20 18 10 22 22 C 1.39938 * 119.99938 * 179.97438 * 21 20 18 23 23 C 1.38861 * 120.01586 * 359.72943 * 22 21 20 24 24 C 1.38118 * 119.97737 * 179.74418 * 23 22 21 25 25 C 1.38699 * 120.01793 * 0.50213 * 24 23 22 26 26 O 1.35997 * 119.97922 * 179.74483 * 25 24 23 27 27 C 1.38699 * 120.03640 * 359.77490 * 25 24 23 28 28 C 1.38107 * 120.02281 * 359.97062 * 27 25 24 29 29 H 0.97003 * 120.00146 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47781 * 59.99756 * 9 7 2 31 31 H 1.09006 * 109.47155 * 299.99609 * 9 7 2 32 32 H 1.09001 * 109.46632 * 329.99937 * 11 10 9 33 33 H 1.08996 * 109.46728 * 209.99930 * 11 10 9 34 34 H 1.07994 * 120.78944 * 359.96926 * 13 12 11 35 35 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 36 36 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 37 37 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 38 38 H 1.08999 * 109.46849 * 299.99992 * 20 18 10 39 39 H 1.09002 * 109.47000 * 60.00232 * 20 18 10 40 40 H 0.96997 * 120.00028 * 0.02562 * 21 20 18 41 41 H 1.07999 * 120.01205 * 359.97438 * 23 22 21 42 42 H 1.07999 * 119.98997 * 180.23373 * 24 23 22 43 43 H 0.96698 * 114.00428 * 270.02570 * 26 25 24 44 44 H 1.08005 * 119.98745 * 179.97438 * 27 25 24 45 45 H 1.07999 * 120.01249 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 4.2445 -3.2667 -1.2660 12 6 5.6679 -3.0302 -1.7007 13 6 5.9869 -1.9411 -2.4976 14 6 7.3085 -1.7661 -2.8775 15 6 8.2586 -2.6736 -2.4480 16 7 7.9198 -3.6951 -1.6860 17 6 6.6726 -3.8927 -1.3055 18 6 4.2241 -3.2097 1.1700 19 8 4.6280 -4.3533 1.1710 20 6 3.9731 -2.4982 2.4745 21 7 4.2894 -3.3952 3.5888 22 6 4.1343 -2.9542 4.9078 23 6 3.6860 -1.6645 5.1608 24 6 3.5282 -1.2318 6.4629 25 6 3.8273 -2.0816 7.5176 26 8 3.6766 -1.6530 8.7994 27 6 4.2806 -3.3680 7.2656 28 6 4.4340 -3.8040 5.9642 29 1 -0.4850 0.8401 -0.0004 30 1 3.8746 -0.6799 0.8911 31 1 3.8752 -0.6804 -0.8889 32 1 3.5639 -2.8831 -2.0261 33 1 4.0775 -4.3358 -1.1349 34 1 5.2231 -1.2483 -2.8184 35 1 7.5923 -0.9315 -3.5014 36 1 9.2905 -2.5442 -2.7391 37 1 6.4331 -4.7410 -0.6815 38 1 4.6036 -1.6109 2.5316 39 1 2.9251 -2.2036 2.5319 40 1 4.6070 -4.2945 3.4123 41 1 3.4572 -1.0013 4.3397 42 1 3.1759 -0.2301 6.6600 43 1 4.4661 -1.2354 9.1700 44 1 4.5137 -4.0288 8.0874 45 1 4.7874 -4.8056 5.7682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144564779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:46 Heat of formation + Delta-G solvation = -27.205183 kcal Electronic energy + Delta-G solvation = -28810.381901 eV Core-core repulsion = 24792.289851 eV Total energy + Delta-G solvation = -4018.092050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.52152 -40.82337 -40.33929 -38.16645 -37.08919 -35.47460 -34.75183 -33.64904 -32.71197 -31.93086 -30.31123 -29.96100 -28.05987 -26.42455 -24.75000 -24.24070 -23.82555 -23.14441 -22.40363 -20.23781 -19.21216 -19.14904 -18.81237 -18.01937 -17.68530 -17.46208 -16.92584 -16.80686 -16.60780 -16.17926 -16.02525 -15.92810 -15.29971 -15.05414 -14.77627 -14.68103 -14.56786 -14.31021 -14.13239 -14.03009 -13.89746 -13.74394 -13.43108 -13.23656 -13.04042 -12.95542 -12.70323 -12.55856 -12.39272 -12.02341 -11.72394 -11.25891 -11.09283 -10.90688 -10.78708 -10.72688 -10.46480 -9.99179 -9.92799 -9.58021 -8.30189 -8.29607 -6.38334 0.10048 0.32222 0.44235 0.53972 1.40133 1.42873 1.50862 1.52117 1.95601 2.34035 2.55977 2.81620 2.92940 3.04492 3.45941 3.51055 3.54250 3.85642 3.90314 3.96437 4.06924 4.08498 4.08818 4.23076 4.43427 4.44974 4.48956 4.59175 4.62864 4.65490 4.72495 4.76679 4.82835 4.86663 5.08744 5.19151 5.26528 5.32899 5.36815 5.40846 5.51389 5.59535 5.77434 5.77944 6.11477 6.23322 6.46564 6.68452 6.75679 7.00335 7.01909 7.07418 7.28508 8.86230 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008161 B = 0.003678 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3429.955628 B = 7611.881770 C = 9967.571571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.236 1.236 7 C -0.541 4.541 8 H 0.033 0.967 9 C 0.216 3.784 10 N -0.583 5.583 11 C 0.162 3.838 12 C -0.157 4.157 13 C -0.068 4.068 14 C -0.166 4.166 15 C 0.088 3.912 16 N -0.514 5.514 17 C 0.104 3.896 18 C 0.513 3.487 19 O -0.574 6.574 20 C 0.116 3.884 21 N -0.735 5.735 22 C 0.201 3.799 23 C -0.197 4.197 24 C -0.102 4.102 25 C 0.032 3.968 26 O -0.509 6.509 27 C -0.096 4.096 28 C -0.183 4.183 29 H 0.268 0.732 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.148 0.852 35 H 0.169 0.831 36 H 0.184 0.816 37 H 0.144 0.856 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.408 0.592 41 H 0.123 0.877 42 H 0.137 0.863 43 H 0.401 0.599 44 H 0.147 0.853 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.972 0.085 3.843 15.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.175 4.175 3 Si 0.756 3.244 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.159 1.159 7 C -0.580 4.580 8 H 0.051 0.949 9 C 0.094 3.906 10 N -0.312 5.312 11 C 0.039 3.961 12 C -0.160 4.160 13 C -0.095 4.095 14 C -0.185 4.185 15 C -0.069 4.069 16 N -0.223 5.223 17 C -0.053 4.053 18 C 0.302 3.698 19 O -0.456 6.456 20 C -0.012 4.012 21 N -0.367 5.367 22 C 0.098 3.902 23 C -0.220 4.220 24 C -0.121 4.121 25 C -0.014 4.014 26 O -0.320 6.320 27 C -0.115 4.115 28 C -0.206 4.206 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.166 0.834 35 H 0.187 0.813 36 H 0.201 0.799 37 H 0.161 0.839 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.246 0.754 41 H 0.141 0.859 42 H 0.154 0.846 43 H 0.258 0.742 44 H 0.165 0.835 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 15.042 -1.062 3.878 15.570 hybrid contribution -0.720 1.128 -0.456 1.414 sum 14.322 0.066 3.421 14.725 Atomic orbital electron populations 1.70046 1.08467 1.28388 1.50994 1.25725 0.95308 1.02885 0.93616 0.85921 0.79972 0.78701 0.79765 1.18549 1.21502 1.15860 1.21449 0.90998 0.93288 1.52235 0.94863 1.19726 0.93033 0.78742 0.99072 1.47873 1.62963 1.15629 1.04763 1.20206 0.91851 0.98395 0.85677 1.21221 0.97168 0.97564 1.00026 1.21869 0.98037 0.95404 0.94163 1.22492 0.92896 1.01625 1.01517 1.23359 1.01557 0.89402 0.92554 1.67725 1.20002 1.21995 1.12535 1.22680 0.87940 0.98438 0.96208 1.20579 0.76665 0.86300 0.86298 1.90574 1.48749 1.18579 1.87678 1.20967 1.02631 0.93384 0.84183 1.44436 1.74052 1.16967 1.01283 1.18049 0.94458 0.93400 0.84324 1.20735 1.08036 0.95644 0.97564 1.21329 0.98833 1.00339 0.91557 1.18303 1.05573 0.93434 0.84077 1.84836 1.42328 1.80249 1.24622 1.21331 0.97657 0.95809 0.96715 1.20658 1.08225 1.00586 0.91091 0.92281 0.93485 0.93133 0.88585 0.90025 0.83403 0.81321 0.79910 0.83860 0.88613 0.89478 0.75450 0.85928 0.84565 0.74179 0.83488 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.46 13.96 21.45 0.30 -53.17 16 2 C 0.02 1.23 5.47 84.65 0.46 1.69 16 3 Si 0.93 37.06 27.47 68.60 1.88 38.95 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.29 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.24 -8.21 6.54 99.48 0.65 -7.56 16 7 C -0.54 -26.58 9.84 25.60 0.25 -26.33 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 9 C 0.22 8.30 4.03 85.63 0.35 8.65 16 10 N -0.58 -21.09 2.44 -830.48 -2.03 -23.12 16 11 C 0.16 5.21 5.56 85.63 0.48 5.68 16 12 C -0.16 -4.51 5.48 -19.77 -0.11 -4.61 16 13 C -0.07 -1.64 9.86 22.47 0.22 -1.41 16 14 C -0.17 -3.23 10.11 22.36 0.23 -3.00 16 15 C 0.09 1.91 11.18 84.69 0.95 2.86 16 16 N -0.51 -14.76 10.36 -195.83 -2.03 -16.79 16 17 C 0.10 3.16 10.86 84.67 0.92 4.08 16 18 C 0.51 18.87 7.74 87.66 0.68 19.55 16 19 O -0.57 -22.34 14.81 -3.04 -0.05 -22.39 16 20 C 0.12 3.90 3.95 85.63 0.34 4.24 16 21 N -0.73 -22.79 5.71 -342.98 -1.96 -24.75 16 22 C 0.20 5.87 6.66 38.14 0.25 6.12 16 23 C -0.20 -5.74 9.31 22.39 0.21 -5.53 16 24 C -0.10 -2.66 9.98 22.35 0.22 -2.43 16 25 C 0.03 0.79 6.70 22.49 0.15 0.94 16 26 O -0.51 -10.69 13.50 -93.52 -1.26 -11.95 16 27 C -0.10 -2.21 9.98 22.35 0.22 -1.99 16 28 C -0.18 -4.60 9.89 22.39 0.22 -4.37 16 29 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.05 1.72 5.50 -2.39 -0.01 1.71 16 31 H 0.05 1.79 7.50 -2.38 -0.02 1.77 16 32 H 0.10 3.01 8.03 -2.39 -0.02 2.99 16 33 H 0.08 2.72 7.37 -2.39 -0.02 2.70 16 34 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 35 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 36 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.14 4.65 7.62 -2.91 -0.02 4.63 16 38 H 0.10 2.95 7.20 -2.39 -0.02 2.93 16 39 H 0.09 3.29 7.82 -2.39 -0.02 3.27 16 40 H 0.41 12.61 7.45 -92.71 -0.69 11.92 16 41 H 0.12 3.63 6.73 -2.91 -0.02 3.61 16 42 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 43 H 0.40 4.32 9.06 -74.06 -0.67 3.65 16 44 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 45 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -66.36 384.60 0.52 -65.84 By element: Atomic # 1 Polarization: 43.63 SS G_CDS: -0.38 Total: 43.25 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 6.04 Total: 4.13 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -5.72 Total: -117.82 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.31 Total: -34.34 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 1.88 Total: 38.95 kcal Total: -66.36 0.52 -65.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144564779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.633 kcal (2) G-P(sol) polarization free energy of solvation -66.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds