Wall clock time and date at job start Sat Apr 11 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30723 * 1 3 3 Si 1.86798 * 120.00156 * 2 1 4 4 H 1.48506 * 109.47051 * 239.99466 * 3 2 1 5 5 H 1.48500 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47138 * 119.99824 * 3 2 1 7 7 C 1.40059 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99949 * 186.31924 * 7 2 1 9 9 C 1.41277 * 120.00028 * 6.32398 * 7 2 1 10 10 C 1.40720 * 120.15767 * 173.80501 * 9 7 2 11 11 N 1.31902 * 119.92568 * 180.02562 * 10 9 7 12 12 C 1.32151 * 120.27815 * 359.97438 * 11 10 9 13 13 C 1.39921 * 120.31733 * 0.02562 * 12 11 10 14 14 N 1.38830 * 119.96877 * 179.97438 * 13 12 11 15 15 C 1.47013 * 111.00387 * 123.95543 * 14 13 12 16 16 C 1.53096 * 109.26317 * 182.39542 * 15 14 13 17 17 O 1.43015 * 109.25504 * 303.15033 * 16 15 14 18 18 C 1.43011 * 113.73924 * 58.66971 * 17 16 15 19 19 H 1.09010 * 109.50532 * 61.30765 * 18 17 16 20 20 C 1.53003 * 109.50733 * 181.39230 * 18 17 16 21 21 O 1.42896 * 109.47318 * 294.91433 * 20 18 17 22 22 C 1.35898 * 117.00476 * 179.97438 * 21 20 18 23 23 C 1.38735 * 120.04892 * 359.73078 * 22 21 20 24 24 C 1.38153 * 119.93674 * 179.74084 * 23 22 21 25 25 C 1.38263 * 120.05700 * 0.50569 * 24 23 22 26 26 C 1.38263 * 120.11266 * 359.76974 * 25 24 23 27 27 C 1.38142 * 120.05721 * 359.97164 * 26 25 24 28 28 C 1.47016 * 111.00165 * 247.63878 * 14 13 12 29 29 N 1.32264 * 120.06691 * 0.25555 * 13 12 11 30 30 H 0.97004 * 120.00347 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.03693 * 359.97438 * 10 9 7 32 32 H 1.07996 * 119.84611 * 179.97438 * 12 11 10 33 33 H 1.09006 * 109.50778 * 62.45469 * 15 14 13 34 34 H 1.09001 * 109.54098 * 302.35298 * 15 14 13 35 35 H 1.09000 * 109.50616 * 183.21668 * 16 15 14 36 36 H 1.08995 * 109.53917 * 63.10925 * 16 15 14 37 37 H 1.08992 * 109.46938 * 54.91768 * 20 18 17 38 38 H 1.09000 * 109.47215 * 174.91452 * 20 18 17 39 39 H 1.07989 * 120.03260 * 359.97438 * 23 22 21 40 40 H 1.07999 * 119.96865 * 180.22586 * 24 23 22 41 41 H 1.08004 * 119.94136 * 179.74292 * 25 24 23 42 42 H 1.07996 * 119.97314 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.03188 * 179.97438 * 27 26 25 44 44 H 1.09005 * 109.54720 * 57.68670 * 28 14 13 45 45 H 1.09003 * 109.46866 * 297.55873 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0951 1.6963 -1.2125 5 1 1.2763 2.7464 -0.0006 6 1 3.0950 1.6964 1.2125 7 6 2.0075 -1.2130 0.0005 8 1 3.0825 -1.2158 0.1035 9 6 1.3075 -2.4328 -0.1337 10 6 2.0141 -3.6427 -0.2645 11 7 1.3559 -4.7788 -0.3900 12 6 0.0345 -4.7865 -0.3931 13 6 -0.6791 -3.5899 -0.2637 14 7 -2.0673 -3.6063 -0.2684 15 6 -2.6058 -2.9742 0.9448 16 6 -4.1339 -3.0672 0.9270 17 8 -4.6296 -2.4564 -0.2674 18 6 -4.1260 -3.0477 -1.4682 19 1 -4.4278 -4.0943 -1.5129 20 6 -4.6885 -2.3017 -2.6799 21 8 -6.1046 -2.4841 -2.7364 22 6 -6.7640 -1.8816 -3.7606 23 6 -6.0630 -1.1256 -4.6890 24 6 -6.7350 -0.5186 -5.7323 25 6 -8.1061 -0.6552 -5.8457 26 6 -8.8077 -1.4034 -4.9185 27 6 -8.1399 -2.0168 -3.8764 28 6 -2.5979 -2.9556 -1.4752 29 7 -0.0324 -2.4425 -0.1426 30 1 -0.4851 0.8400 -0.0004 31 1 3.0941 -3.6408 -0.2629 32 1 -0.4973 -5.7207 -0.4967 33 1 -2.3052 -1.9269 0.9736 34 1 -2.2202 -3.4879 1.8254 35 1 -4.5401 -2.5498 1.7960 36 1 -4.4357 -4.1142 0.9527 37 1 -4.4622 -1.2394 -2.5896 38 1 -4.2351 -2.6936 -3.5904 39 1 -4.9926 -1.0150 -4.5983 40 1 -6.1893 0.0670 -6.4574 41 1 -8.6301 -0.1764 -6.6598 42 1 -9.8788 -1.5083 -5.0090 43 1 -8.6884 -2.6008 -3.1521 44 1 -2.2070 -3.4561 -2.3612 45 1 -2.2965 -1.9081 -1.4855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167158251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:21 Heat of formation + Delta-G solvation = -14.150474 kcal Electronic energy + Delta-G solvation = -29084.441857 eV Core-core repulsion = 25066.915902 eV Total energy + Delta-G solvation = -4017.525955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.58582 -41.03939 -40.09398 -38.30244 -36.84334 -35.94915 -33.60934 -33.44180 -31.90873 -31.69135 -30.74443 -29.06303 -27.95500 -26.74189 -24.66167 -24.21645 -23.52352 -23.17263 -22.35945 -21.40860 -19.58472 -19.21630 -18.36107 -17.88887 -17.33130 -17.15223 -17.08780 -16.76217 -16.71114 -16.30635 -16.11756 -15.84069 -15.51765 -15.29361 -14.90846 -14.66927 -14.66042 -14.33068 -13.91449 -13.63448 -13.39548 -13.37082 -13.25938 -13.03499 -12.71993 -12.61647 -12.46356 -12.35666 -12.16049 -12.06094 -11.76464 -11.70056 -11.61499 -11.54625 -10.92085 -10.83429 -9.97469 -9.95106 -9.70648 -9.30100 -9.17546 -8.42637 -6.70453 0.39435 0.48277 0.49621 1.01140 1.37787 1.49398 1.51242 1.99531 2.14377 2.57637 2.69726 2.78083 2.85546 3.62770 3.70321 3.79937 3.88619 3.95349 3.96278 4.02898 4.07053 4.17065 4.21863 4.24847 4.27804 4.31504 4.39197 4.47171 4.51236 4.52026 4.57709 4.73463 4.78842 4.84141 4.92881 5.04542 5.06321 5.09379 5.22503 5.37126 5.48851 5.57928 5.60340 5.75881 5.86311 5.91905 6.07979 6.15244 6.41522 6.49870 6.73761 7.24653 7.80154 8.23327 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011636 B = 0.002872 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.765158 B = 9746.265718 C =10996.177017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.026 3.974 3 Si 0.990 3.010 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.436 4.436 8 H 0.103 0.897 9 C 0.185 3.815 10 C -0.081 4.081 11 N -0.434 5.434 12 C -0.094 4.094 13 C 0.258 3.742 14 N -0.468 5.468 15 C 0.029 3.971 16 C 0.075 3.925 17 O -0.389 6.389 18 C 0.110 3.890 19 H 0.087 0.913 20 C 0.077 3.923 21 O -0.320 6.320 22 C 0.107 3.893 23 C -0.226 4.226 24 C -0.088 4.088 25 C -0.163 4.163 26 C -0.081 4.081 27 C -0.168 4.168 28 C 0.045 3.955 29 N -0.496 5.496 30 H 0.282 0.718 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.128 0.872 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.156 0.844 43 H 0.135 0.865 44 H 0.084 0.916 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.912 1.455 -7.497 16.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.468 4.468 8 H 0.121 0.879 9 C 0.058 3.942 10 C -0.250 4.250 11 N -0.146 5.146 12 C -0.254 4.254 13 C 0.019 3.981 14 N -0.192 5.192 15 C -0.099 4.099 16 C -0.001 4.001 17 O -0.308 6.308 18 C 0.052 3.948 19 H 0.104 0.896 20 C 0.001 3.999 21 O -0.234 6.234 22 C 0.062 3.938 23 C -0.245 4.245 24 C -0.106 4.106 25 C -0.181 4.181 26 C -0.099 4.099 27 C -0.187 4.187 28 C -0.083 4.083 29 N -0.217 5.217 30 H 0.092 0.908 31 H 0.168 0.832 32 H 0.170 0.830 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.113 0.887 39 H 0.146 0.854 40 H 0.161 0.839 41 H 0.167 0.833 42 H 0.174 0.826 43 H 0.153 0.847 44 H 0.102 0.898 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -15.478 1.116 -7.333 17.163 hybrid contribution 1.399 1.270 0.198 1.900 sum -14.079 2.387 -7.135 15.963 Atomic orbital electron populations 1.70150 1.08976 1.29681 1.27439 1.27043 0.95721 1.04696 0.92348 0.85120 0.78585 0.74918 0.80377 1.18108 1.19592 1.17932 1.20040 0.95883 0.89791 1.41044 0.87869 1.19701 0.88873 0.94551 0.91087 1.23400 1.00200 0.89092 1.12311 1.67750 1.09106 1.29914 1.07797 1.22619 0.89763 0.97587 1.15445 1.21058 0.90598 0.91143 0.95295 1.60448 1.02509 1.52985 1.03224 1.22696 0.96903 0.98047 0.92262 1.22765 0.90199 0.99524 0.87626 1.87993 1.68924 1.59797 1.14094 1.21987 0.90275 0.98006 0.84580 0.89555 1.22688 0.78907 1.00826 0.97471 1.86050 1.21304 1.69734 1.46302 1.19401 0.92905 0.93687 0.87822 1.21497 1.00960 1.03649 0.98346 1.21293 0.95253 0.97419 0.96608 1.21446 0.94160 1.01441 1.01080 1.21334 1.01206 0.94797 0.92565 1.20726 0.90924 1.05138 1.01895 1.22466 0.94662 0.97900 0.93254 1.69466 1.09036 1.25743 1.17465 0.90783 0.83159 0.83028 0.94741 0.90540 0.86312 0.90669 0.91767 0.88652 0.85415 0.83913 0.83280 0.82603 0.84719 0.89754 0.94835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.36 11.51 21.84 0.25 -37.11 16 2 C 0.03 1.22 5.49 85.30 0.47 1.68 16 3 Si 0.99 35.45 29.56 68.60 2.03 37.48 16 4 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 5 H -0.27 -9.41 7.11 99.48 0.71 -8.71 16 6 H -0.26 -8.79 7.11 99.48 0.71 -8.09 16 7 C -0.44 -21.96 9.15 23.46 0.21 -21.74 16 8 H 0.10 4.73 7.85 -2.91 -0.02 4.71 16 9 C 0.19 9.84 6.54 40.17 0.26 10.10 16 10 C -0.08 -4.03 10.97 85.29 0.94 -3.09 16 11 N -0.43 -21.19 10.47 -192.24 -2.01 -23.20 16 12 C -0.09 -4.38 11.17 85.05 0.95 -3.43 16 13 C 0.26 12.21 5.36 133.35 0.71 12.93 16 14 N -0.47 -18.64 4.70 -700.37 -3.29 -21.93 16 15 C 0.03 1.08 5.44 86.31 0.47 1.55 16 16 C 0.08 2.23 7.01 72.01 0.50 2.73 16 17 O -0.39 -12.96 10.44 -144.55 -1.51 -14.46 16 18 C 0.11 3.37 3.09 30.63 0.09 3.46 16 19 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 20 C 0.08 2.10 4.41 71.98 0.32 2.42 16 21 O -0.32 -9.21 10.10 -87.98 -0.89 -10.10 16 22 C 0.11 2.75 6.69 22.51 0.15 2.90 16 23 C -0.23 -5.23 9.04 22.37 0.20 -5.03 16 24 C -0.09 -1.64 10.04 22.26 0.22 -1.42 16 25 C -0.16 -2.62 10.04 22.28 0.22 -2.39 16 26 C -0.08 -1.35 10.04 22.25 0.22 -1.13 16 27 C -0.17 -3.66 9.99 22.37 0.22 -3.43 16 28 C 0.05 1.66 4.82 86.31 0.42 2.07 16 29 N -0.50 -26.14 7.34 -185.99 -1.36 -27.50 16 30 H 0.28 13.04 8.29 -92.71 -0.77 12.27 16 31 H 0.15 6.70 8.06 -2.91 -0.02 6.67 16 32 H 0.15 6.28 8.06 -2.91 -0.02 6.25 16 33 H 0.03 1.55 7.86 -2.38 -0.02 1.53 16 34 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.06 1.85 7.65 -2.39 -0.02 1.83 16 38 H 0.10 2.22 7.68 -2.39 -0.02 2.20 16 39 H 0.13 2.83 6.30 -2.92 -0.02 2.81 16 40 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 43 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 44 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 45 H 0.03 1.45 8.05 -2.39 -0.02 1.43 16 Total: -1.00 -64.00 377.43 0.81 -63.19 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: 1.00 Total: 35.46 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 6.59 Total: -1.81 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -6.41 Total: -109.75 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -2.40 Total: -24.56 kcal Atomic # 14 Polarization: 35.45 SS G_CDS: 2.03 Total: 37.48 kcal Total: -64.00 0.81 -63.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167158251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.043 kcal (2) G-P(sol) polarization free energy of solvation -64.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds