Wall clock time and date at job start Sat Apr 11 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 120.00027 * 2 1 4 4 H 1.48497 * 109.47099 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47111 * 299.99676 * 3 2 1 6 6 H 1.48502 * 109.46966 * 59.99390 * 3 2 1 7 7 C 1.38952 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00148 * 175.01147 * 7 2 1 9 9 N 1.37096 * 119.99624 * 355.02037 * 7 2 1 10 10 C 1.46497 * 120.00167 * 5.72697 * 9 7 2 11 11 C 1.50697 * 109.47237 * 265.46271 * 10 9 7 12 12 C 1.38242 * 120.00101 * 274.97127 * 11 10 9 13 13 C 1.38230 * 119.99879 * 179.76694 * 12 11 10 14 14 C 1.38235 * 120.00095 * 0.49864 * 13 12 11 15 15 C 1.38237 * 119.99936 * 359.74845 * 14 13 12 16 16 C 1.38233 * 120.00082 * 0.02562 * 15 14 13 17 17 C 1.34775 * 119.99864 * 185.72405 * 9 7 2 18 18 O 1.21288 * 120.00259 * 180.02562 * 17 9 7 19 19 C 1.50704 * 119.99948 * 0.02562 * 17 9 7 20 20 C 1.53000 * 109.47238 * 179.97438 * 19 17 9 21 21 N 1.46497 * 109.47275 * 179.97438 * 20 19 17 22 22 C 1.34775 * 120.00006 * 179.97438 * 21 20 19 23 23 O 1.21691 * 120.00116 * 0.28556 * 22 21 20 24 24 C 1.46677 * 119.99804 * 180.02562 * 22 21 20 25 25 C 1.37875 * 126.23340 * 179.69158 * 24 22 21 26 26 C 1.39836 * 107.08565 * 179.84961 * 25 24 22 27 27 C 1.35444 * 107.86607 * 0.41762 * 26 25 24 28 28 N 1.35537 * 108.87335 * 359.74217 * 27 26 25 29 29 H 0.96996 * 125.67982 * 180.02562 * 28 27 26 30 30 H 0.97001 * 120.00224 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47254 * 25.46371 * 10 9 7 32 32 H 1.09007 * 109.46955 * 145.46319 * 10 9 7 33 33 H 1.08000 * 119.99604 * 359.97438 * 12 11 10 34 34 H 1.07998 * 120.00235 * 180.22786 * 13 12 11 35 35 H 1.07997 * 119.99942 * 179.73157 * 14 13 12 36 36 H 1.08001 * 120.00170 * 179.97438 * 15 14 13 37 37 H 1.08002 * 119.99852 * 179.97438 * 16 15 14 38 38 H 1.09000 * 109.47042 * 59.99859 * 19 17 9 39 39 H 1.09001 * 109.47158 * 299.99626 * 19 17 9 40 40 H 1.09000 * 109.47058 * 60.00066 * 20 19 17 41 41 H 1.08994 * 109.47061 * 300.00281 * 20 19 17 42 42 H 0.96999 * 120.00185 * 0.02562 * 21 20 19 43 43 H 1.08001 * 126.45286 * 0.02562 * 25 24 22 44 44 H 1.08002 * 126.06696 * 180.16325 * 26 25 24 45 45 H 1.08004 * 125.56838 * 179.71788 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0859 -1.2051 -0.0808 9 7 1.3273 -2.3883 0.1041 10 6 -0.1376 -2.3946 0.0879 11 6 -0.6558 -2.3761 1.5028 12 6 -0.7911 -3.5592 2.2049 13 6 -1.2619 -3.5417 3.5045 14 6 -1.6071 -2.3421 4.0985 15 6 -1.4766 -1.1595 3.3946 16 6 -1.0014 -1.1766 2.0967 17 6 2.0049 -3.5475 0.2209 18 8 1.4019 -4.5959 0.3121 19 6 3.5118 -3.5409 0.2381 20 6 4.0265 -4.9749 0.3794 21 7 5.4913 -4.9686 0.3955 22 6 6.1689 -6.1276 0.5132 23 8 5.5640 -7.1799 0.6008 24 6 7.6356 -6.1213 0.5299 25 6 8.4540 -7.2243 0.6500 26 6 9.7735 -6.7625 0.6159 27 6 9.7388 -5.4146 0.4880 28 7 8.4456 -5.0123 0.4347 29 1 8.1415 -4.0958 0.3441 30 1 -0.4850 0.8400 -0.0004 31 1 -0.4989 -1.5138 -0.4429 32 1 -0.4915 -3.2936 -0.4169 33 1 -0.5258 -4.4968 1.7392 34 1 -1.3641 -4.4656 4.0543 35 1 -1.9790 -2.3289 5.1123 36 1 -1.7466 -0.2224 3.8585 37 1 -0.8998 -0.2526 1.5466 38 1 3.8629 -2.9447 1.0803 39 1 3.8840 -3.1109 -0.6918 40 1 3.6754 -5.5715 -0.4626 41 1 3.6543 -5.4045 1.3094 42 1 5.9736 -4.1302 0.3223 43 1 8.1359 -8.2517 0.7486 44 1 10.6624 -7.3721 0.6840 45 1 10.6009 -4.7659 0.4372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175537244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:28 Heat of formation + Delta-G solvation = 24.451613 kcal Electronic energy + Delta-G solvation = -28729.664117 eV Core-core repulsion = 24713.812074 eV Total energy + Delta-G solvation = -4015.852043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.38471 -39.30822 -38.85245 -37.79559 -35.40070 -34.78904 -31.83465 -31.58289 -31.08239 -30.32403 -29.84815 -28.96563 -25.95070 -25.02243 -23.48403 -22.06707 -21.60045 -20.66770 -20.45263 -20.18717 -19.33817 -18.90671 -17.10642 -16.59159 -15.82672 -15.81205 -15.56758 -15.24641 -14.75268 -14.51776 -14.38757 -14.12090 -14.01785 -13.85930 -13.72862 -13.58832 -12.98764 -12.81567 -12.60181 -12.53310 -12.43541 -12.00943 -11.95372 -11.59591 -11.42527 -11.28283 -10.94828 -10.76074 -10.52042 -10.48350 -10.33263 -10.10459 -9.82479 -9.36390 -9.20792 -9.04293 -8.66005 -8.39322 -8.00926 -7.90589 -7.74197 -6.22386 -4.15157 1.36864 2.24035 2.36151 2.58648 2.89564 2.93875 3.04628 3.07865 3.15530 3.39440 3.69646 3.86839 4.54066 4.78777 4.82979 4.84826 4.97430 5.16638 5.23379 5.38052 5.55315 5.66581 5.78339 5.84889 5.86648 5.88591 5.99207 6.12426 6.26199 6.30625 6.34994 6.46378 6.47540 6.56950 6.62904 6.73664 6.77418 6.95991 6.98817 7.14401 7.16835 7.34732 7.36450 7.51897 7.53281 7.72266 7.91443 8.04160 8.20061 8.42090 8.89783 9.34011 9.73136 10.38691 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.002793 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.708876 B =10023.870402 C =11522.917398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.303 4.303 8 H 0.101 0.899 9 N -0.438 5.438 10 C 0.114 3.886 11 C -0.064 4.064 12 C -0.113 4.113 13 C -0.146 4.146 14 C -0.138 4.138 15 C -0.152 4.152 16 C -0.096 4.096 17 C 0.460 3.540 18 O -0.597 6.597 19 C -0.135 4.135 20 C 0.138 3.862 21 N -0.730 5.730 22 C 0.584 3.416 23 O -0.527 6.527 24 C -0.051 4.051 25 C -0.110 4.110 26 C -0.213 4.213 27 C 0.018 3.982 28 N -0.540 5.540 29 H 0.416 0.584 30 H 0.268 0.732 31 H 0.179 0.821 32 H 0.038 0.962 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.169 0.831 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.391 0.609 43 H 0.147 0.853 44 H 0.142 0.858 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.253 -0.414 1.095 12.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.431 4.431 8 H 0.119 0.881 9 N -0.155 5.155 10 C -0.008 4.008 11 C -0.066 4.066 12 C -0.131 4.131 13 C -0.164 4.164 14 C -0.157 4.157 15 C -0.171 4.171 16 C -0.114 4.114 17 C 0.248 3.752 18 O -0.483 6.483 19 C -0.175 4.175 20 C 0.015 3.985 21 N -0.380 5.380 22 C 0.371 3.629 23 O -0.403 6.403 24 C -0.164 4.164 25 C -0.137 4.137 26 C -0.238 4.238 27 C -0.117 4.117 28 N -0.137 5.137 29 H 0.254 0.746 30 H 0.082 0.918 31 H 0.194 0.806 32 H 0.057 0.943 33 H 0.139 0.861 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.185 0.815 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.224 0.776 43 H 0.165 0.835 44 H 0.160 0.840 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 11.253 -1.360 1.156 11.394 hybrid contribution 0.668 1.683 0.271 1.830 sum 11.921 0.323 1.427 12.010 Atomic orbital electron populations 1.69178 1.05649 1.25789 1.50638 1.25216 0.95658 0.99822 0.96673 0.85737 0.79092 0.80948 0.78170 1.19605 1.20496 1.20394 1.19916 0.92793 0.83173 1.47186 0.88144 1.43830 1.05473 1.04963 1.61239 1.21850 0.79742 1.05698 0.93503 1.20335 0.96489 0.92105 0.97632 1.21454 0.98262 0.99140 0.94262 1.20948 1.02482 0.97098 0.95913 1.20948 1.02359 0.93358 0.98990 1.21217 1.02718 0.96896 0.96225 1.22622 0.93584 1.01613 0.93609 1.19766 0.88492 0.84273 0.82695 1.90552 1.70212 1.31275 1.56296 1.21583 0.96175 0.96088 1.03670 1.21147 0.76502 0.97133 1.03736 1.45995 1.08585 1.08344 1.75106 1.17059 0.84756 0.84159 0.76930 1.90861 1.68609 1.30841 1.49980 1.20573 0.90595 0.87565 1.17698 1.21345 0.91909 0.97889 1.02555 1.20904 0.97456 0.93923 1.11494 1.22029 0.86179 0.96558 1.06981 1.42067 1.06409 1.08721 1.56463 0.74639 0.91807 0.80613 0.94324 0.86052 0.87689 0.87906 0.87747 0.81496 0.89571 0.89649 0.90596 0.90623 0.77577 0.83501 0.83975 0.81268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -19.26 5.74 55.50 0.32 -18.94 16 2 C 0.02 0.54 5.45 -17.47 -0.10 0.44 16 3 Si 0.93 17.33 29.56 -169.99 -5.02 12.30 16 4 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 5 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.30 -6.78 9.39 -14.93 -0.14 -6.92 16 8 H 0.10 2.05 6.32 -52.49 -0.33 1.72 16 9 N -0.44 -10.17 2.62 -116.09 -0.30 -10.47 16 10 C 0.11 2.68 4.97 -5.20 -0.03 2.65 16 11 C -0.06 -1.47 5.43 -104.62 -0.57 -2.04 16 12 C -0.11 -2.48 9.41 -39.58 -0.37 -2.85 16 13 C -0.15 -2.86 10.05 -39.59 -0.40 -3.26 16 14 C -0.14 -2.55 10.05 -39.58 -0.40 -2.95 16 15 C -0.15 -2.95 10.05 -39.58 -0.40 -3.35 16 16 C -0.10 -2.08 9.21 -39.58 -0.36 -2.45 16 17 C 0.46 10.29 7.60 -10.98 -0.08 10.20 16 18 O -0.60 -14.80 14.09 5.55 0.08 -14.73 16 19 C -0.13 -2.32 4.19 -27.88 -0.12 -2.44 16 20 C 0.14 2.33 4.96 -4.04 -0.02 2.31 16 21 N -0.73 -9.83 5.55 -61.62 -0.34 -10.17 16 22 C 0.58 8.90 7.79 -12.85 -0.10 8.80 16 23 O -0.53 -10.20 16.88 5.20 0.09 -10.11 16 24 C -0.05 -0.63 7.06 -81.98 -0.58 -1.21 16 25 C -0.11 -1.32 10.65 -39.12 -0.42 -1.74 16 26 C -0.21 -1.98 10.81 -39.98 -0.43 -2.41 16 27 C 0.02 0.14 11.89 -16.91 -0.20 -0.06 16 28 N -0.54 -4.63 5.99 -9.39 -0.06 -4.68 16 29 H 0.42 2.38 8.19 -40.82 -0.33 2.04 16 30 H 0.27 5.60 8.08 -40.82 -0.33 5.27 16 31 H 0.18 4.25 4.56 -81.49 -0.37 3.88 16 32 H 0.04 0.93 7.54 -51.93 -0.39 0.54 16 33 H 0.12 2.80 6.82 -52.49 -0.36 2.44 16 34 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 35 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.17 3.68 4.56 -52.61 -0.24 3.44 16 38 H 0.09 1.40 7.98 -51.93 -0.41 0.98 16 39 H 0.09 1.33 7.82 -51.93 -0.41 0.93 16 40 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 41 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 42 H 0.39 3.90 7.60 -40.82 -0.31 3.59 16 43 H 0.15 1.74 8.06 -52.49 -0.42 1.31 16 44 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.17 0.69 8.06 -52.48 -0.42 0.27 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -29.81 374.70 -9.97 -39.77 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -5.66 Total: 18.65 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -4.71 Total: -7.27 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -0.38 Total: -44.27 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: 0.17 Total: -24.84 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.02 Total: 12.30 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.81 -9.97 -39.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175537244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.225 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds