Wall clock time and date at job start Sat Apr 11 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 120.00027 * 2 1 4 4 H 1.48497 * 109.47099 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47111 * 299.99676 * 3 2 1 6 6 H 1.48502 * 109.46966 * 59.99390 * 3 2 1 7 7 C 1.38952 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00148 * 175.01147 * 7 2 1 9 9 N 1.37096 * 119.99624 * 355.02037 * 7 2 1 10 10 C 1.46497 * 120.00167 * 5.72697 * 9 7 2 11 11 C 1.50697 * 109.47237 * 265.46271 * 10 9 7 12 12 C 1.38242 * 120.00101 * 274.97127 * 11 10 9 13 13 C 1.38230 * 119.99879 * 179.76694 * 12 11 10 14 14 C 1.38235 * 120.00095 * 0.49864 * 13 12 11 15 15 C 1.38237 * 119.99936 * 359.74845 * 14 13 12 16 16 C 1.38233 * 120.00082 * 0.02562 * 15 14 13 17 17 C 1.34775 * 119.99864 * 185.72405 * 9 7 2 18 18 O 1.21288 * 120.00259 * 180.02562 * 17 9 7 19 19 C 1.50704 * 119.99948 * 0.02562 * 17 9 7 20 20 C 1.53000 * 109.47238 * 179.97438 * 19 17 9 21 21 N 1.46497 * 109.47275 * 179.97438 * 20 19 17 22 22 C 1.34775 * 120.00006 * 179.97438 * 21 20 19 23 23 O 1.21691 * 120.00116 * 0.28556 * 22 21 20 24 24 C 1.46677 * 119.99804 * 180.02562 * 22 21 20 25 25 C 1.37875 * 126.23340 * 179.69158 * 24 22 21 26 26 C 1.39836 * 107.08565 * 179.84961 * 25 24 22 27 27 C 1.35444 * 107.86607 * 0.41762 * 26 25 24 28 28 N 1.35537 * 108.87335 * 359.74217 * 27 26 25 29 29 H 0.96996 * 125.67982 * 180.02562 * 28 27 26 30 30 H 0.97001 * 120.00224 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47254 * 25.46371 * 10 9 7 32 32 H 1.09007 * 109.46955 * 145.46319 * 10 9 7 33 33 H 1.08000 * 119.99604 * 359.97438 * 12 11 10 34 34 H 1.07998 * 120.00235 * 180.22786 * 13 12 11 35 35 H 1.07997 * 119.99942 * 179.73157 * 14 13 12 36 36 H 1.08001 * 120.00170 * 179.97438 * 15 14 13 37 37 H 1.08002 * 119.99852 * 179.97438 * 16 15 14 38 38 H 1.09000 * 109.47042 * 59.99859 * 19 17 9 39 39 H 1.09001 * 109.47158 * 299.99626 * 19 17 9 40 40 H 1.09000 * 109.47058 * 60.00066 * 20 19 17 41 41 H 1.08994 * 109.47061 * 300.00281 * 20 19 17 42 42 H 0.96999 * 120.00185 * 0.02562 * 21 20 19 43 43 H 1.08001 * 126.45286 * 0.02562 * 25 24 22 44 44 H 1.08002 * 126.06696 * 180.16325 * 26 25 24 45 45 H 1.08004 * 125.56838 * 179.71788 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0859 -1.2051 -0.0808 9 7 1.3273 -2.3883 0.1041 10 6 -0.1376 -2.3946 0.0879 11 6 -0.6558 -2.3761 1.5028 12 6 -0.7911 -3.5592 2.2049 13 6 -1.2619 -3.5417 3.5045 14 6 -1.6071 -2.3421 4.0985 15 6 -1.4766 -1.1595 3.3946 16 6 -1.0014 -1.1766 2.0967 17 6 2.0049 -3.5475 0.2209 18 8 1.4019 -4.5959 0.3121 19 6 3.5118 -3.5409 0.2381 20 6 4.0265 -4.9749 0.3794 21 7 5.4913 -4.9686 0.3955 22 6 6.1689 -6.1276 0.5132 23 8 5.5640 -7.1799 0.6008 24 6 7.6356 -6.1213 0.5299 25 6 8.4540 -7.2243 0.6500 26 6 9.7735 -6.7625 0.6159 27 6 9.7388 -5.4146 0.4880 28 7 8.4456 -5.0123 0.4347 29 1 8.1415 -4.0958 0.3441 30 1 -0.4850 0.8400 -0.0004 31 1 -0.4989 -1.5138 -0.4429 32 1 -0.4915 -3.2936 -0.4169 33 1 -0.5258 -4.4968 1.7392 34 1 -1.3641 -4.4656 4.0543 35 1 -1.9790 -2.3289 5.1123 36 1 -1.7466 -0.2224 3.8585 37 1 -0.8998 -0.2526 1.5466 38 1 3.8629 -2.9447 1.0803 39 1 3.8840 -3.1109 -0.6918 40 1 3.6754 -5.5715 -0.4626 41 1 3.6543 -5.4045 1.3094 42 1 5.9736 -4.1302 0.3223 43 1 8.1359 -8.2517 0.7486 44 1 10.6624 -7.3721 0.6840 45 1 10.6009 -4.7659 0.4372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175537244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:27 Heat of formation + Delta-G solvation = 6.726055 kcal Electronic energy + Delta-G solvation = -28730.432754 eV Core-core repulsion = 24713.812074 eV Total energy + Delta-G solvation = -4016.620681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.20852 -40.91329 -40.15443 -39.41556 -37.03547 -36.24982 -33.56976 -32.95663 -32.14170 -31.60744 -31.44449 -29.94724 -27.62265 -26.62980 -24.84200 -23.25590 -23.20106 -22.03186 -21.49486 -21.10403 -20.88868 -20.08255 -18.70998 -18.19452 -17.39290 -16.96203 -16.91636 -16.52165 -16.15406 -16.11211 -15.84416 -15.66027 -15.52379 -14.95251 -14.90140 -14.56766 -14.42805 -14.26849 -14.12865 -13.65032 -13.58232 -13.51463 -13.23400 -13.18397 -12.92934 -12.80698 -12.41626 -12.36223 -12.14314 -11.98069 -11.97407 -11.52325 -11.37445 -11.05484 -10.43068 -10.34829 -9.95645 -9.69256 -9.58728 -9.38375 -9.19039 -7.90843 -5.88864 0.43561 0.63127 0.73962 1.45632 1.55298 1.65733 1.84836 1.91570 2.01612 2.23687 2.32689 2.32848 2.93446 3.17067 3.35649 3.75548 3.95922 4.09236 4.18372 4.24473 4.31386 4.35115 4.37272 4.42415 4.52682 4.55484 4.65097 4.83394 4.89186 4.90542 4.93409 5.08074 5.11072 5.23734 5.28457 5.29008 5.36811 5.53375 5.62361 5.73980 5.75049 5.89410 5.92149 5.95575 6.23498 6.40181 6.41054 6.61016 6.66439 7.06245 7.17512 7.60029 8.00743 8.73252 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.002793 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.708876 B =10023.870402 C =11522.917398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C -0.010 4.010 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.330 4.330 8 H 0.121 0.879 9 N -0.444 5.444 10 C 0.115 3.885 11 C -0.084 4.084 12 C -0.135 4.135 13 C -0.147 4.147 14 C -0.130 4.130 15 C -0.149 4.149 16 C -0.114 4.114 17 C 0.439 3.561 18 O -0.635 6.635 19 C -0.116 4.116 20 C 0.154 3.846 21 N -0.712 5.712 22 C 0.582 3.418 23 O -0.582 6.582 24 C -0.083 4.083 25 C -0.126 4.126 26 C -0.229 4.229 27 C 0.050 3.950 28 N -0.527 5.527 29 H 0.431 0.569 30 H 0.273 0.727 31 H 0.173 0.827 32 H 0.011 0.989 33 H 0.097 0.903 34 H 0.129 0.871 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.164 0.836 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.412 0.588 43 H 0.133 0.867 44 H 0.164 0.836 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.988 2.453 2.457 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.207 4.207 3 Si 0.824 3.176 4 H -0.180 1.180 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.457 4.457 8 H 0.138 0.862 9 N -0.160 5.160 10 C -0.007 4.007 11 C -0.085 4.085 12 C -0.154 4.154 13 C -0.165 4.165 14 C -0.148 4.148 15 C -0.167 4.167 16 C -0.132 4.132 17 C 0.228 3.772 18 O -0.523 6.523 19 C -0.156 4.156 20 C 0.029 3.971 21 N -0.364 5.364 22 C 0.372 3.628 23 O -0.462 6.462 24 C -0.196 4.196 25 C -0.153 4.153 26 C -0.253 4.253 27 C -0.087 4.087 28 N -0.125 5.125 29 H 0.271 0.729 30 H 0.086 0.914 31 H 0.188 0.812 32 H 0.029 0.971 33 H 0.115 0.885 34 H 0.147 0.853 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.180 0.820 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.249 0.751 43 H 0.151 0.849 44 H 0.181 0.819 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 14.003 1.565 2.507 14.312 hybrid contribution -0.193 0.806 -0.140 0.841 sum 13.810 2.371 2.366 14.210 Atomic orbital electron populations 1.69219 1.06751 1.26631 1.50027 1.26040 0.96390 1.02472 0.95785 0.84739 0.78715 0.76723 0.77422 1.18012 1.20785 1.20923 1.20388 0.93849 0.83013 1.48432 0.86163 1.44048 1.05333 1.05782 1.60868 1.21771 0.80719 1.03835 0.94420 1.20308 0.97787 0.93044 0.97322 1.21378 1.00155 0.98011 0.95813 1.21251 1.01367 0.99019 0.94816 1.21363 1.00707 0.92190 1.00534 1.21569 1.01256 0.98741 0.95173 1.22634 0.94790 1.00751 0.94993 1.20621 0.90646 0.83583 0.82334 1.90525 1.71485 1.32461 1.57878 1.21433 0.92389 0.96302 1.05490 1.20710 0.78493 0.96540 1.01311 1.45686 1.07020 1.09166 1.74547 1.17506 0.86106 0.83504 0.75719 1.90824 1.70020 1.32711 1.52634 1.20057 0.89015 0.89284 1.21237 1.21541 0.93644 0.97557 1.02595 1.21227 0.96779 0.95181 1.12071 1.22796 0.86602 0.96561 1.02768 1.42050 1.06352 1.08588 1.55464 0.72873 0.91440 0.81166 0.97107 0.88469 0.85272 0.83814 0.84661 0.82018 0.87783 0.87306 0.93016 0.93367 0.75127 0.84867 0.81872 0.76602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -39.44 5.74 21.66 0.12 -39.32 16 2 C -0.01 -0.44 5.45 84.93 0.46 0.02 16 3 Si 1.00 34.12 29.56 68.60 2.03 36.15 16 4 H -0.26 -8.09 7.11 99.48 0.71 -7.38 16 5 H -0.28 -9.71 7.11 99.48 0.71 -9.00 16 6 H -0.28 -9.87 7.11 99.48 0.71 -9.16 16 7 C -0.33 -14.68 9.39 84.04 0.79 -13.89 16 8 H 0.12 4.70 6.32 -2.91 -0.02 4.68 16 9 N -0.44 -21.32 2.62 -639.60 -1.67 -23.00 16 10 C 0.11 5.73 4.97 85.63 0.43 6.15 16 11 C -0.08 -3.95 5.43 -19.86 -0.11 -4.06 16 12 C -0.13 -6.18 9.41 22.27 0.21 -5.97 16 13 C -0.15 -5.62 10.05 22.27 0.22 -5.39 16 14 C -0.13 -4.44 10.05 22.27 0.22 -4.22 16 15 C -0.15 -5.46 10.05 22.27 0.22 -5.24 16 16 C -0.11 -4.92 9.21 22.27 0.21 -4.72 16 17 C 0.44 20.49 7.60 87.66 0.67 21.16 16 18 O -0.63 -33.79 14.09 -3.05 -0.04 -33.83 16 19 C -0.12 -4.01 4.19 29.85 0.13 -3.88 16 20 C 0.15 5.43 4.96 86.38 0.43 5.86 16 21 N -0.71 -19.23 5.55 -467.10 -2.59 -21.82 16 22 C 0.58 18.32 7.79 86.45 0.67 18.99 16 23 O -0.58 -24.12 16.88 -4.32 -0.07 -24.19 16 24 C -0.08 -2.01 7.06 40.35 0.28 -1.72 16 25 C -0.13 -2.99 10.65 22.57 0.24 -2.75 16 26 C -0.23 -3.66 10.81 22.01 0.24 -3.42 16 27 C 0.05 0.55 11.89 83.47 0.99 1.54 16 28 N -0.53 -7.48 5.99 -183.62 -1.10 -8.58 16 29 H 0.43 3.37 8.19 -92.71 -0.76 2.61 16 30 H 0.27 11.37 8.08 -92.71 -0.75 10.62 16 31 H 0.17 8.69 4.56 -60.75 -0.28 8.41 16 32 H 0.01 0.56 7.54 -2.38 -0.02 0.54 16 33 H 0.10 4.85 6.82 -2.91 -0.02 4.83 16 34 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 35 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 36 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 37 H 0.16 7.15 4.56 -3.16 -0.01 7.14 16 38 H 0.10 3.24 7.98 -2.39 -0.02 3.22 16 39 H 0.11 3.25 7.82 -2.39 -0.02 3.23 16 40 H 0.05 2.07 8.10 -2.39 -0.02 2.05 16 41 H 0.05 1.96 8.10 -2.39 -0.02 1.94 16 42 H 0.41 7.50 7.60 -92.71 -0.70 6.79 16 43 H 0.13 3.38 8.06 -2.91 -0.02 3.35 16 44 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.22 0.36 8.06 -2.91 -0.02 0.34 16 Total: -1.00 -70.43 374.70 2.31 -68.11 By element: Atomic # 1 Polarization: 48.66 SS G_CDS: -0.66 Total: 48.01 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 6.30 Total: -1.53 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -5.24 Total: -92.72 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: -0.12 Total: -58.02 kcal Atomic # 14 Polarization: 34.12 SS G_CDS: 2.03 Total: 36.15 kcal Total: -70.43 2.31 -68.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175537244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.838 kcal (2) G-P(sol) polarization free energy of solvation -70.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds