Wall clock time and date at job start Sat Apr 11 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00372 * 2 1 4 4 H 1.48496 * 109.47349 * 239.99681 * 3 2 1 5 5 H 1.48502 * 109.46522 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47082 * 119.98933 * 3 2 1 7 7 C 1.37877 * 119.99912 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.84906 * 0.02562 * 7 2 1 9 9 C 1.53235 * 108.53821 * 231.32348 * 8 7 2 10 10 C 1.52956 * 109.40544 * 305.37624 * 9 8 7 11 11 H 1.09002 * 109.41315 * 303.48993 * 10 9 8 12 12 N 1.46502 * 109.41326 * 183.62933 * 10 9 8 13 13 C 1.34774 * 120.00004 * 154.85752 * 12 10 9 14 14 O 1.21501 * 119.99927 * 0.02562 * 13 12 10 15 15 C 1.48242 * 119.99933 * 180.02562 * 13 12 10 16 16 N 1.31793 * 126.63819 * 179.71412 * 15 13 12 17 17 C 1.34115 * 105.61114 * 179.85678 * 16 15 13 18 18 C 1.50699 * 126.19344 * 180.14584 * 17 16 15 19 19 C 1.50703 * 109.47222 * 270.33281 * 18 17 16 20 20 C 1.38237 * 119.99879 * 269.72606 * 19 18 17 21 21 C 1.38232 * 119.99711 * 179.80978 * 20 19 18 22 22 C 1.38232 * 120.00137 * 0.42429 * 21 20 19 23 23 C 1.38236 * 119.99972 * 359.80287 * 22 21 20 24 24 C 1.38234 * 120.00175 * 0.02562 * 23 22 21 25 25 N 1.30094 * 107.61091 * 0.40866 * 17 16 15 26 26 O 1.21299 * 110.39063 * 359.73814 * 25 17 16 27 27 C 1.52960 * 109.81680 * 63.59897 * 10 9 8 28 28 C 1.51267 * 120.84982 * 179.97438 * 7 2 1 29 29 H 0.97000 * 119.99728 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.62200 * 111.61454 * 8 7 2 31 31 H 1.08997 * 109.62933 * 351.04542 * 8 7 2 32 32 H 1.08995 * 109.48153 * 185.39409 * 9 8 7 33 33 H 1.09005 * 109.47644 * 65.35365 * 9 8 7 34 34 H 0.97003 * 120.00260 * 334.86467 * 12 10 9 35 35 H 1.08999 * 109.46813 * 30.33339 * 18 17 16 36 36 H 1.08997 * 109.47169 * 150.33168 * 18 17 16 37 37 H 1.08005 * 119.99912 * 359.97438 * 20 19 18 38 38 H 1.08002 * 119.99561 * 180.20663 * 21 20 19 39 39 H 1.08005 * 120.00029 * 179.79201 * 22 21 20 40 40 H 1.08001 * 119.99918 * 179.97438 * 23 22 21 41 41 H 1.07993 * 120.00046 * 179.97438 * 24 23 22 42 42 H 1.08999 * 109.48541 * 56.37865 * 27 10 9 43 43 H 1.08999 * 109.48238 * 176.42091 * 27 10 9 44 44 H 1.09003 * 109.62401 * 248.38501 * 28 7 2 45 45 H 1.09001 * 109.63012 * 8.95791 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 6 1.2676 -2.5151 0.0005 9 6 1.8227 -3.3826 1.1352 10 6 3.3397 -3.5071 0.9842 11 1 3.5738 -3.9124 -0.0003 12 7 3.8598 -4.4062 2.0172 13 6 5.0159 -5.0686 1.8144 14 8 5.6270 -4.9196 0.7749 15 6 5.5418 -5.9789 2.8595 16 7 6.6491 -6.6910 2.7976 17 6 6.7180 -7.3530 3.9619 18 6 7.8087 -8.3045 4.3814 19 6 7.4530 -9.7015 3.9423 20 6 6.7334 -10.5286 4.7844 21 6 6.4037 -11.8087 4.3800 22 6 6.8012 -12.2647 3.1370 23 6 7.5248 -11.4393 2.2968 24 6 7.8514 -10.1580 2.6998 25 7 5.6699 -7.0293 4.6614 26 8 4.9800 -6.2416 4.0491 27 6 3.9905 -2.1311 1.1354 28 6 3.5170 -1.2165 0.0000 29 1 -0.4850 0.8401 -0.0004 30 1 1.4199 -3.0193 -0.9538 31 1 0.2035 -2.3409 0.1599 32 1 1.3704 -4.3733 1.0900 33 1 1.5896 -2.9196 2.0941 34 1 3.3720 -4.5250 2.8473 35 1 8.7491 -8.0063 3.9179 36 1 7.9146 -8.2805 5.4660 37 1 6.4265 -10.1737 5.7572 38 1 5.8387 -12.4537 5.0366 39 1 6.5465 -13.2661 2.8224 40 1 7.8356 -11.7958 1.3259 41 1 8.4171 -9.5133 2.0435 42 1 3.7061 -1.6978 2.0943 43 1 5.0746 -2.2347 1.0904 44 1 3.8770 -1.6008 -0.9544 45 1 3.8982 -0.2078 0.1590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192276820.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:41 Heat of formation + Delta-G solvation = 27.147166 kcal Electronic energy + Delta-G solvation = -28248.406128 eV Core-core repulsion = 24232.670973 eV Total energy + Delta-G solvation = -4015.735155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.91352 -41.17480 -40.25760 -38.59683 -37.43198 -35.58808 -34.72984 -33.62334 -32.77788 -31.83652 -31.47371 -29.41980 -28.67371 -26.56389 -24.67381 -23.98783 -23.50527 -23.31566 -22.58985 -21.64469 -21.34106 -19.69243 -19.52327 -18.20168 -17.72053 -17.70041 -17.41432 -16.43129 -16.20646 -16.15067 -16.07872 -15.88190 -15.57279 -14.97664 -14.54977 -14.41181 -14.34633 -14.16396 -14.09413 -13.93940 -13.50966 -13.42487 -13.25417 -13.03650 -12.77446 -12.66738 -12.57856 -12.45799 -12.16916 -12.04948 -11.92714 -11.89303 -11.68305 -11.56238 -11.32602 -10.89534 -10.73137 -10.52411 -10.12824 -9.87847 -9.78809 -8.15357 -6.08837 -0.69137 0.25429 0.44651 0.76938 0.93420 1.41544 1.44148 1.50542 1.66447 1.77775 2.42676 2.53796 2.89511 2.94539 3.14431 3.56663 3.69953 3.89956 4.01148 4.10480 4.15249 4.22055 4.25705 4.30761 4.47364 4.52114 4.55149 4.65973 4.72586 4.73585 4.74065 4.96904 4.99224 5.04489 5.07739 5.11040 5.23257 5.23632 5.45232 5.50421 5.57576 5.58046 5.58677 5.66954 5.78122 5.84558 6.04515 6.13970 6.36593 6.71737 6.79463 6.97214 7.49379 8.94969 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.001999 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.639335 B =14000.825749 C =14164.057938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.272 1.272 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.499 4.499 8 C 0.008 3.992 9 C -0.103 4.103 10 C 0.166 3.834 11 H 0.074 0.926 12 N -0.681 5.681 13 C 0.617 3.383 14 O -0.519 6.519 15 C 0.149 3.851 16 N -0.438 5.438 17 C 0.178 3.822 18 C 0.013 3.987 19 C -0.104 4.104 20 C -0.116 4.116 21 C -0.129 4.129 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.117 4.117 25 N -0.371 5.371 26 O 0.106 5.894 27 C -0.111 4.111 28 C -0.012 4.012 29 H 0.263 0.737 30 H 0.002 0.998 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.421 0.579 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.128 0.872 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.020 0.980 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.872 -21.537 12.030 28.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.172 4.172 3 Si 0.764 3.236 4 H -0.197 1.197 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.519 4.519 8 C -0.030 4.030 9 C -0.141 4.141 10 C 0.063 3.937 11 H 0.092 0.908 12 N -0.333 5.333 13 C 0.397 3.603 14 O -0.393 6.393 15 C -0.074 4.074 16 N -0.174 5.174 17 C -0.095 4.095 18 C -0.026 4.026 19 C -0.105 4.105 20 C -0.134 4.134 21 C -0.147 4.147 22 C -0.140 4.140 23 C -0.149 4.149 24 C -0.135 4.135 25 N -0.074 5.074 26 O 0.042 5.958 27 C -0.150 4.150 28 C -0.051 4.051 29 H 0.072 0.928 30 H 0.020 0.980 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.259 0.741 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.156 0.844 41 H 0.146 0.854 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.038 0.962 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 14.354 -21.771 11.888 28.659 hybrid contribution -0.285 1.260 -0.010 1.292 sum 14.069 -20.511 11.878 27.563 Atomic orbital electron populations 1.69931 1.07409 1.27497 1.51737 1.25509 0.95301 1.01418 0.94930 0.85893 0.78398 0.79898 0.79380 1.19719 1.22205 1.18894 1.20589 0.90810 0.92040 1.48416 1.19310 0.97417 0.93167 0.93113 1.21746 0.91954 0.99496 1.00908 1.20947 0.94357 0.88405 0.89978 0.90822 1.46027 1.21575 1.43363 1.22331 1.16123 0.82068 0.78969 0.83179 1.90896 1.58699 1.63933 1.25761 1.28318 0.91053 0.99316 0.88747 1.71962 1.16216 1.08138 1.21117 1.26297 0.97147 0.99505 0.86507 1.19142 0.92797 0.86575 1.04059 1.19646 1.00713 0.94592 0.95571 1.21316 0.97572 0.94391 1.00146 1.21467 1.00078 0.96070 0.97091 1.21548 0.97470 1.00773 0.94224 1.21460 0.98780 0.93991 1.00684 1.21322 0.99966 0.96613 0.95594 1.74638 1.06076 1.07164 1.19568 1.85450 1.42045 1.44144 1.24139 1.21856 0.97929 0.94980 1.00234 1.19628 0.95001 0.95472 0.94956 0.92780 0.97979 0.94583 0.91614 0.91870 0.74123 0.86053 0.85652 0.84854 0.83966 0.83945 0.84389 0.85450 0.91989 0.93383 0.96200 0.95399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.32 12.73 21.45 0.27 -52.04 16 2 C 0.03 1.44 5.46 84.66 0.46 1.91 16 3 Si 0.94 42.44 26.80 68.60 1.84 44.28 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.30 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.50 -24.95 5.51 -16.17 -0.09 -25.04 16 8 C 0.01 0.37 5.97 30.11 0.18 0.55 16 9 C -0.10 -3.67 5.40 30.66 0.17 -3.51 16 10 C 0.17 5.63 2.35 44.96 0.11 5.74 16 11 H 0.07 2.76 7.57 -2.39 -0.02 2.74 16 12 N -0.68 -18.31 5.07 -445.16 -2.26 -20.57 16 13 C 0.62 18.38 7.81 86.90 0.68 19.06 16 14 O -0.52 -19.36 16.76 -3.72 -0.06 -19.42 16 15 C 0.15 3.97 8.24 87.49 0.72 4.70 16 16 N -0.44 -12.01 11.55 -303.06 -3.50 -15.51 16 17 C 0.18 4.01 7.43 138.54 1.03 5.04 16 18 C 0.01 0.19 5.97 29.10 0.17 0.37 16 19 C -0.10 -1.75 5.12 -19.86 -0.10 -1.85 16 20 C -0.12 -1.79 9.70 22.27 0.22 -1.57 16 21 C -0.13 -1.79 10.05 22.27 0.22 -1.56 16 22 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16 23 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 24 C -0.12 -2.02 9.70 22.27 0.22 -1.80 16 25 N -0.37 -8.66 12.16 -58.96 -0.72 -9.37 16 26 O 0.11 2.48 11.15 70.03 0.78 3.26 16 27 C -0.11 -4.14 5.50 30.68 0.17 -3.97 16 28 C -0.01 -0.55 5.60 30.13 0.17 -0.38 16 29 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.04 1.86 7.07 -2.39 -0.02 1.84 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.42 8.67 8.43 -92.71 -0.78 7.89 16 35 H 0.12 1.55 8.09 -2.39 -0.02 1.53 16 36 H 0.13 1.36 8.08 -2.39 -0.02 1.34 16 37 H 0.13 1.69 8.06 -2.91 -0.02 1.66 16 38 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 40 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 41 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 42 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.03 1.21 5.17 -2.39 -0.01 1.19 16 Total: -1.00 -64.15 379.30 1.37 -62.78 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.25 Total: 12.15 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 4.77 Total: -5.55 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -6.20 Total: -97.49 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.72 Total: -16.16 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.84 Total: 44.28 kcal Total: -64.15 1.37 -62.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192276820.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.923 kcal (2) G-P(sol) polarization free energy of solvation -64.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds