Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99559 * 2 1 4 4 H 1.48499 * 109.47244 * 239.99657 * 3 2 1 5 5 H 1.48496 * 109.47159 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46844 * 119.99925 * 3 2 1 7 7 C 1.37875 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99945 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99717 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46724 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99906 * 262.69168 * 10 9 7 12 12 C 1.50699 * 109.47318 * 270.00346 * 11 10 9 13 13 C 1.38676 * 120.41683 * 269.71925 * 12 11 10 14 14 C 1.38626 * 118.42051 * 179.77977 * 13 12 11 15 15 C 1.38232 * 119.15874 * 0.51817 * 14 13 12 16 16 N 1.31847 * 120.76598 * 359.71836 * 15 14 13 17 17 C 1.31894 * 121.72611 * 0.02562 * 16 15 14 18 18 C 1.34774 * 120.00083 * 82.69740 * 10 9 7 19 19 O 1.21522 * 119.99597 * 182.97386 * 18 10 9 20 20 C 1.48164 * 120.00241 * 2.96331 * 18 10 9 21 21 C 1.39308 * 119.72569 * 173.14526 * 20 18 10 22 22 C 1.38584 * 119.06287 * 179.75052 * 21 20 18 23 23 C 1.50699 * 120.75758 * 180.23706 * 22 21 20 24 24 C 1.53002 * 109.47335 * 90.00016 * 23 22 21 25 25 O 1.42902 * 109.47101 * 179.97438 * 24 23 22 26 26 C 1.38628 * 118.48771 * 0.25917 * 22 21 20 27 27 C 1.38564 * 119.35237 * 359.97438 * 26 22 21 28 28 N 1.31529 * 120.89890 * 0.02583 * 27 26 22 29 29 H 0.96993 * 120.00465 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47530 * 59.99470 * 9 7 2 31 31 H 1.09001 * 109.46814 * 299.99099 * 9 7 2 32 32 H 1.09003 * 109.46638 * 30.00176 * 11 10 9 33 33 H 1.08996 * 109.47336 * 150.00157 * 11 10 9 34 34 H 1.07997 * 120.79034 * 0.02782 * 13 12 11 35 35 H 1.07994 * 120.42430 * 180.21941 * 14 13 12 36 36 H 1.08002 * 119.62051 * 179.74849 * 15 14 13 37 37 H 1.08003 * 119.61831 * 179.97438 * 17 16 15 38 38 H 1.08007 * 120.46658 * 0.03328 * 21 20 18 39 39 H 1.09005 * 109.46854 * 210.00289 * 23 22 21 40 40 H 1.08996 * 109.47030 * 329.99625 * 23 22 21 41 41 H 1.08997 * 109.46875 * 300.00282 * 24 23 22 42 42 H 1.08999 * 109.46661 * 59.99903 * 24 23 22 43 43 H 0.96694 * 113.99671 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.32727 * 179.97438 * 26 22 21 45 45 H 1.07998 * 119.55094 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.5566 -4.2742 -1.2579 12 6 1.6066 -5.4169 -1.5088 13 6 1.8977 -6.6882 -1.0376 14 6 0.9925 -7.7079 -1.2879 15 6 -0.1567 -7.4278 -2.0032 16 7 -0.3985 -6.2076 -2.4403 17 6 0.4376 -5.2123 -2.2164 18 6 2.7539 -4.0284 1.1582 19 8 3.5841 -4.9158 1.1519 20 6 2.3474 -3.4033 2.4386 21 6 2.8100 -3.9305 3.6422 22 6 2.4253 -3.3319 4.8314 23 6 2.9075 -3.8674 6.1550 24 6 4.2193 -3.1785 6.5366 25 8 4.6761 -3.6858 7.7920 26 6 1.5865 -2.2296 4.7758 27 6 1.1608 -1.7616 3.5430 28 7 1.5414 -2.3490 2.4294 29 1 -0.4850 0.8399 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6243 -2.5567 0.8904 32 1 2.4877 -3.5580 -2.0767 33 1 3.5755 -4.6561 -1.1941 34 1 2.8060 -6.8786 -0.4852 35 1 1.1850 -8.7094 -0.9328 36 1 -0.8650 -8.2174 -2.2061 37 1 0.2057 -4.2260 -2.5906 38 1 3.4630 -4.7908 3.6482 39 1 2.1575 -3.6709 6.9213 40 1 3.0714 -4.9419 6.0742 41 1 4.9690 -3.3750 5.7703 42 1 4.0552 -2.1040 6.6173 43 1 5.5051 -3.2925 8.0969 44 1 1.2679 -1.7404 5.6844 45 1 0.5070 -0.9033 3.4959 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199757922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = 4.405217 kcal Electronic energy + Delta-G solvation = -29463.790299 eV Core-core repulsion = 25447.068980 eV Total energy + Delta-G solvation = -4016.721320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.38471 -39.85667 -38.42510 -37.14144 -35.34810 -33.99250 -32.89450 -32.06858 -31.41715 -30.74603 -29.20815 -27.42775 -26.26401 -24.12650 -23.56724 -23.36515 -22.67281 -21.97696 -21.34227 -18.92901 -17.62476 -16.93669 -16.79821 -16.47326 -16.16733 -15.88100 -15.63429 -15.42635 -15.12099 -14.80343 -14.52589 -14.50878 -14.20116 -13.95798 -13.55631 -13.26037 -12.89679 -12.80046 -12.63221 -12.57169 -12.23999 -12.17225 -11.79957 -11.56255 -11.55966 -11.37522 -11.10725 -10.91963 -10.69284 -10.20028 -10.15465 -9.78885 -9.59778 -9.47519 -9.29580 -9.20741 -8.83264 -8.78348 -8.56027 -8.10001 -7.70164 -6.01735 -4.01023 1.12046 1.30384 1.52224 1.56993 3.27794 3.30496 3.33401 3.37808 3.69623 3.99993 4.17764 4.38395 4.43323 4.67519 4.78837 4.81618 4.94388 5.03048 5.11681 5.16175 5.20408 5.25532 5.26455 5.31751 5.34418 5.36830 5.43100 5.57905 5.72734 5.79830 5.87653 5.91211 6.04554 6.13816 6.14398 6.25585 6.34490 6.48943 6.57777 6.74004 6.93567 6.96282 7.38740 7.49470 7.75027 7.89799 8.18974 8.22286 8.28349 8.42461 8.85076 9.00525 9.58519 11.06335 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007494 B = 0.004593 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3735.540261 B = 6095.007105 C = 8911.973682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.070 3.930 3 Si 0.884 3.116 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.498 4.498 8 H 0.050 0.950 9 C 0.229 3.771 10 N -0.569 5.569 11 C 0.156 3.844 12 C -0.145 4.145 13 C -0.057 4.057 14 C -0.182 4.182 15 C 0.090 3.910 16 N -0.489 5.489 17 C 0.116 3.884 18 C 0.568 3.432 19 O -0.571 6.571 20 C 0.083 3.917 21 C -0.117 4.117 22 C -0.067 4.067 23 C -0.074 4.074 24 C 0.080 3.920 25 O -0.577 6.577 26 C -0.155 4.155 27 C 0.095 3.905 28 N -0.376 5.376 29 H 0.261 0.739 30 H 0.024 0.976 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.138 0.862 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.380 0.620 44 H 0.130 0.870 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.781 -8.554 7.278 11.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.131 4.131 3 Si 0.712 3.288 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.206 1.206 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.110 3.890 10 N -0.297 5.297 11 C 0.032 3.968 12 C -0.148 4.148 13 C -0.084 4.084 14 C -0.201 4.201 15 C -0.067 4.067 16 N -0.197 5.197 17 C -0.041 4.041 18 C 0.356 3.644 19 O -0.452 6.452 20 C -0.055 4.055 21 C -0.138 4.138 22 C -0.075 4.075 23 C -0.112 4.112 24 C 0.002 3.998 25 O -0.382 6.382 26 C -0.176 4.176 27 C -0.063 4.063 28 N -0.087 5.087 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.156 0.844 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.227 0.773 44 H 0.148 0.852 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.423 -8.738 5.887 10.812 hybrid contribution 1.973 1.107 1.351 2.635 sum 4.396 -7.631 7.238 11.399 Atomic orbital electron populations 1.69912 1.05652 1.26583 1.50716 1.24726 0.94625 0.98255 0.95528 0.86800 0.79678 0.83776 0.78513 1.20476 1.21331 1.20612 1.21170 0.92661 0.90405 1.49465 0.93204 1.20169 0.87648 0.81508 0.99676 1.48297 1.43781 1.33380 1.04207 1.20229 0.96702 0.91950 0.87872 1.21410 0.98203 0.96082 0.99149 1.21658 0.99211 0.92094 0.95400 1.22099 0.96257 1.00290 1.01499 1.22700 0.95525 0.94155 0.94357 1.67709 1.31440 1.00371 1.20205 1.22819 0.89174 0.97999 0.94081 1.17901 0.81128 0.81824 0.83564 1.90647 1.34654 1.32779 1.87144 1.21227 0.96689 0.94196 0.93387 1.21899 0.99673 1.00765 0.91504 1.19881 0.97413 0.95818 0.94394 1.20387 0.96468 1.00891 0.93439 1.22152 0.95564 0.96969 0.85097 1.86432 1.44857 1.68598 1.38341 1.22265 0.98640 0.96781 0.99898 1.23103 0.97449 0.98646 0.87110 1.68807 1.06665 1.04586 1.28648 0.92969 0.95809 0.89818 0.88871 0.89640 0.84490 0.85254 0.83288 0.82438 0.84420 0.90012 0.89984 0.93158 0.93289 0.77287 0.85188 0.82410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.82 13.29 55.43 0.74 -23.08 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.88 20.45 29.54 -169.99 -5.02 15.43 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.50 -12.66 7.94 -34.44 -0.27 -12.93 16 8 H 0.05 1.32 7.81 -52.49 -0.41 0.91 16 9 C 0.23 5.37 4.77 -5.19 -0.02 5.34 16 10 N -0.57 -11.83 2.46 -177.42 -0.44 -12.26 16 11 C 0.16 2.77 5.55 -5.19 -0.03 2.74 16 12 C -0.15 -2.40 5.48 -104.48 -0.57 -2.97 16 13 C -0.06 -0.87 9.86 -39.28 -0.39 -1.26 16 14 C -0.18 -2.39 10.11 -39.44 -0.40 -2.79 16 15 C 0.09 1.24 11.18 -17.55 -0.20 1.04 16 16 N -0.49 -8.03 10.36 -13.25 -0.14 -8.17 16 17 C 0.12 1.94 10.86 -17.55 -0.19 1.75 16 18 C 0.57 11.92 7.59 -12.19 -0.09 11.83 16 19 O -0.57 -12.10 15.70 5.35 0.08 -12.02 16 20 C 0.08 1.65 6.62 -83.01 -0.55 1.10 16 21 C -0.12 -1.94 9.33 -39.06 -0.36 -2.31 16 22 C -0.07 -0.94 5.17 -104.35 -0.54 -1.48 16 23 C -0.07 -0.84 5.76 -27.88 -0.16 -1.00 16 24 C 0.08 0.84 7.03 37.16 0.26 1.10 16 25 O -0.58 -5.81 13.66 -35.23 -0.48 -6.29 16 26 C -0.16 -2.18 9.82 -39.32 -0.39 -2.57 16 27 C 0.10 1.66 11.18 -17.56 -0.20 1.46 16 28 N -0.38 -7.77 4.97 -9.80 -0.05 -7.81 16 29 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.02 0.59 8.02 -51.93 -0.42 0.17 16 31 H 0.08 2.09 5.26 -52.14 -0.27 1.82 16 32 H 0.09 1.58 8.02 -51.93 -0.42 1.16 16 33 H 0.09 1.47 7.33 -51.93 -0.38 1.09 16 34 H 0.14 2.07 7.85 -52.49 -0.41 1.65 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.15 1.57 8.06 -52.49 -0.42 1.14 16 37 H 0.16 2.56 8.06 -52.48 -0.42 2.14 16 38 H 0.14 2.16 7.66 -52.48 -0.40 1.76 16 39 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 40 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.38 2.09 9.12 45.56 0.42 2.51 16 44 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 45 H 0.16 2.62 8.06 -52.49 -0.42 2.19 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -31.16 387.18 -8.90 -40.06 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.23 Total: 7.53 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -4.20 Total: 0.79 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.11 Total: -51.33 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.40 Total: -18.31 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.16 -8.90 -40.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199757922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.462 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds