Wall clock time and date at job start Sat Apr 11 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99559 * 2 1 4 4 H 1.48499 * 109.47244 * 239.99657 * 3 2 1 5 5 H 1.48496 * 109.47159 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46844 * 119.99925 * 3 2 1 7 7 C 1.37875 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99945 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99717 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46724 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99906 * 262.69168 * 10 9 7 12 12 C 1.50699 * 109.47318 * 270.00346 * 11 10 9 13 13 C 1.38676 * 120.41683 * 269.71925 * 12 11 10 14 14 C 1.38626 * 118.42051 * 179.77977 * 13 12 11 15 15 C 1.38232 * 119.15874 * 0.51817 * 14 13 12 16 16 N 1.31847 * 120.76598 * 359.71836 * 15 14 13 17 17 C 1.31894 * 121.72611 * 0.02562 * 16 15 14 18 18 C 1.34774 * 120.00083 * 82.69740 * 10 9 7 19 19 O 1.21522 * 119.99597 * 182.97386 * 18 10 9 20 20 C 1.48164 * 120.00241 * 2.96331 * 18 10 9 21 21 C 1.39308 * 119.72569 * 173.14526 * 20 18 10 22 22 C 1.38584 * 119.06287 * 179.75052 * 21 20 18 23 23 C 1.50699 * 120.75758 * 180.23706 * 22 21 20 24 24 C 1.53002 * 109.47335 * 90.00016 * 23 22 21 25 25 O 1.42902 * 109.47101 * 179.97438 * 24 23 22 26 26 C 1.38628 * 118.48771 * 0.25917 * 22 21 20 27 27 C 1.38564 * 119.35237 * 359.97438 * 26 22 21 28 28 N 1.31529 * 120.89890 * 0.02583 * 27 26 22 29 29 H 0.96993 * 120.00465 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47530 * 59.99470 * 9 7 2 31 31 H 1.09001 * 109.46814 * 299.99099 * 9 7 2 32 32 H 1.09003 * 109.46638 * 30.00176 * 11 10 9 33 33 H 1.08996 * 109.47336 * 150.00157 * 11 10 9 34 34 H 1.07997 * 120.79034 * 0.02782 * 13 12 11 35 35 H 1.07994 * 120.42430 * 180.21941 * 14 13 12 36 36 H 1.08002 * 119.62051 * 179.74849 * 15 14 13 37 37 H 1.08003 * 119.61831 * 179.97438 * 17 16 15 38 38 H 1.08007 * 120.46658 * 0.03328 * 21 20 18 39 39 H 1.09005 * 109.46854 * 210.00289 * 23 22 21 40 40 H 1.08996 * 109.47030 * 329.99625 * 23 22 21 41 41 H 1.08997 * 109.46875 * 300.00282 * 24 23 22 42 42 H 1.08999 * 109.46661 * 59.99903 * 24 23 22 43 43 H 0.96694 * 113.99671 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.32727 * 179.97438 * 26 22 21 45 45 H 1.07998 * 119.55094 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.5566 -4.2742 -1.2579 12 6 1.6066 -5.4169 -1.5088 13 6 1.8977 -6.6882 -1.0376 14 6 0.9925 -7.7079 -1.2879 15 6 -0.1567 -7.4278 -2.0032 16 7 -0.3985 -6.2076 -2.4403 17 6 0.4376 -5.2123 -2.2164 18 6 2.7539 -4.0284 1.1582 19 8 3.5841 -4.9158 1.1519 20 6 2.3474 -3.4033 2.4386 21 6 2.8100 -3.9305 3.6422 22 6 2.4253 -3.3319 4.8314 23 6 2.9075 -3.8674 6.1550 24 6 4.2193 -3.1785 6.5366 25 8 4.6761 -3.6858 7.7920 26 6 1.5865 -2.2296 4.7758 27 6 1.1608 -1.7616 3.5430 28 7 1.5414 -2.3490 2.4294 29 1 -0.4850 0.8399 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6243 -2.5567 0.8904 32 1 2.4877 -3.5580 -2.0767 33 1 3.5755 -4.6561 -1.1941 34 1 2.8060 -6.8786 -0.4852 35 1 1.1850 -8.7094 -0.9328 36 1 -0.8650 -8.2174 -2.2061 37 1 0.2057 -4.2260 -2.5906 38 1 3.4630 -4.7908 3.6482 39 1 2.1575 -3.6709 6.9213 40 1 3.0714 -4.9419 6.0742 41 1 4.9690 -3.3750 5.7703 42 1 4.0552 -2.1040 6.6173 43 1 5.5051 -3.2925 8.0969 44 1 1.2679 -1.7404 5.6844 45 1 0.5070 -0.9033 3.4959 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199757922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:55 Heat of formation + Delta-G solvation = -14.985856 kcal Electronic energy + Delta-G solvation = -29464.631160 eV Core-core repulsion = 25447.068980 eV Total energy + Delta-G solvation = -4017.562180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78123 -41.07927 -39.86845 -37.96982 -36.96335 -35.14482 -34.61606 -33.53031 -32.68725 -32.06106 -30.26456 -29.19692 -27.73245 -25.47013 -24.84959 -24.63986 -24.24191 -23.20517 -22.53453 -20.35495 -18.66721 -18.43673 -18.20368 -17.85729 -17.59574 -17.17751 -16.90581 -16.66567 -16.53853 -16.30688 -15.91410 -15.72591 -15.39756 -15.16737 -14.81787 -14.50992 -14.39803 -14.11098 -14.06245 -13.88985 -13.85486 -13.30999 -13.19615 -13.03070 -12.76367 -12.69273 -12.52977 -12.41435 -12.33240 -12.02433 -11.65884 -11.17450 -10.90842 -10.77163 -10.60528 -10.46326 -10.39903 -10.12445 -10.04167 -9.65437 -9.36351 -8.00983 -6.06077 -0.21753 0.11324 0.32204 0.32852 1.41962 1.44162 1.49971 1.81920 2.23654 2.50547 2.90064 2.97657 3.23966 3.32989 3.38202 3.53214 3.74231 3.87262 3.87458 3.96127 4.07338 4.08213 4.09845 4.12409 4.20554 4.30825 4.42353 4.50087 4.58621 4.67011 4.71466 4.81406 4.84890 4.86891 4.97440 5.00939 5.07653 5.18088 5.32885 5.36328 5.53066 5.69161 5.76890 5.90999 5.99733 6.31146 6.51633 6.86333 6.92456 7.00246 7.06348 7.31866 7.56873 9.06241 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007494 B = 0.004593 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3735.540261 B = 6095.007105 C = 8911.973682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.036 3.964 3 Si 0.936 3.064 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.498 4.498 8 H 0.033 0.967 9 C 0.248 3.752 10 N -0.575 5.575 11 C 0.157 3.843 12 C -0.156 4.156 13 C -0.065 4.065 14 C -0.168 4.168 15 C 0.090 3.910 16 N -0.510 5.510 17 C 0.101 3.899 18 C 0.561 3.439 19 O -0.581 6.581 20 C 0.051 3.949 21 C -0.115 4.115 22 C -0.053 4.053 23 C -0.071 4.071 24 C 0.083 3.917 25 O -0.589 6.589 26 C -0.132 4.132 27 C 0.076 3.924 28 N -0.417 5.417 29 H 0.261 0.739 30 H 0.003 0.997 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.137 0.863 35 H 0.168 0.832 36 H 0.187 0.813 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.400 0.600 44 H 0.172 0.828 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.119 -9.559 9.474 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.164 4.164 3 Si 0.763 3.237 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.537 4.537 8 H 0.051 0.949 9 C 0.128 3.872 10 N -0.302 5.302 11 C 0.034 3.966 12 C -0.159 4.159 13 C -0.092 4.092 14 C -0.188 4.188 15 C -0.068 4.068 16 N -0.219 5.219 17 C -0.055 4.055 18 C 0.349 3.651 19 O -0.463 6.463 20 C -0.087 4.087 21 C -0.136 4.136 22 C -0.061 4.061 23 C -0.108 4.108 24 C 0.005 3.995 25 O -0.398 6.398 26 C -0.151 4.151 27 C -0.083 4.083 28 N -0.128 5.128 29 H 0.070 0.930 30 H 0.021 0.979 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.155 0.845 35 H 0.185 0.815 36 H 0.204 0.796 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.250 0.750 44 H 0.189 0.811 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.791 -9.744 8.076 12.960 hybrid contribution 1.883 1.316 0.778 2.426 sum 4.674 -8.428 8.855 13.087 Atomic orbital electron populations 1.70003 1.06634 1.27097 1.51694 1.25238 0.95200 1.00599 0.95345 0.85980 0.78624 0.80861 0.78224 1.20542 1.20792 1.20554 1.21193 0.91767 0.91532 1.49216 0.94862 1.19738 0.87620 0.81783 0.98016 1.48255 1.43472 1.33102 1.05381 1.20277 0.97232 0.92398 0.86726 1.21241 0.98092 0.96303 1.00281 1.21777 0.99853 0.92107 0.95462 1.22476 0.94999 1.01342 0.99963 1.23364 0.96302 0.93894 0.93193 1.67717 1.31667 1.01385 1.21127 1.22714 0.89682 0.98146 0.94982 1.18248 0.80888 0.81790 0.84126 1.90610 1.35020 1.33229 1.87447 1.21180 0.98506 0.95221 0.93773 1.22018 0.99323 1.00817 0.91419 1.20164 0.96201 0.95006 0.94773 1.20407 0.97473 1.00983 0.91950 1.22053 0.94897 0.97273 0.85290 1.86377 1.46339 1.69126 1.37928 1.22579 0.96701 0.95902 0.99963 1.23266 0.98135 0.99010 0.87846 1.68548 1.07829 1.05593 1.30870 0.92997 0.97856 0.90969 0.89102 0.89421 0.84532 0.81453 0.79604 0.83425 0.83882 0.88254 0.89756 0.93711 0.92409 0.75019 0.81082 0.82407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.12 13.29 21.45 0.28 -49.84 16 2 C 0.04 1.88 5.46 84.65 0.46 2.34 16 3 Si 0.94 42.49 29.54 68.60 2.03 44.51 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.50 -26.25 7.94 25.60 0.20 -26.05 16 8 H 0.03 1.83 7.81 -2.91 -0.02 1.81 16 9 C 0.25 12.27 4.77 85.63 0.41 12.68 16 10 N -0.57 -25.06 2.46 -833.54 -2.05 -27.11 16 11 C 0.16 5.86 5.55 85.63 0.48 6.33 16 12 C -0.16 -5.33 5.48 -19.77 -0.11 -5.44 16 13 C -0.07 -1.96 9.86 22.47 0.22 -1.74 16 14 C -0.17 -4.07 10.11 22.36 0.23 -3.84 16 15 C 0.09 2.29 11.18 84.69 0.95 3.24 16 16 N -0.51 -16.69 10.36 -195.83 -2.03 -18.72 16 17 C 0.10 3.52 10.86 84.67 0.92 4.44 16 18 C 0.56 24.32 7.59 86.88 0.66 24.98 16 19 O -0.58 -25.12 15.70 -3.78 -0.06 -25.18 16 20 C 0.05 2.05 6.62 41.91 0.28 2.33 16 21 C -0.11 -3.72 9.33 22.61 0.21 -3.51 16 22 C -0.05 -1.37 5.17 -19.69 -0.10 -1.47 16 23 C -0.07 -1.37 5.76 29.85 0.17 -1.20 16 24 C 0.08 1.48 7.03 71.98 0.51 1.99 16 25 O -0.59 -10.03 13.66 -148.98 -2.04 -12.07 16 26 C -0.13 -3.36 9.82 22.44 0.22 -3.14 16 27 C 0.08 2.63 11.18 84.82 0.95 3.58 16 28 N -0.42 -17.64 4.97 -184.91 -0.92 -18.56 16 29 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 30 H 0.00 0.18 8.02 -2.39 -0.02 0.16 16 31 H 0.07 3.81 5.26 -2.81 -0.01 3.79 16 32 H 0.09 3.32 8.02 -2.39 -0.02 3.30 16 33 H 0.09 3.17 7.33 -2.39 -0.02 3.15 16 34 H 0.14 4.08 7.85 -2.91 -0.02 4.06 16 35 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.19 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.15 5.23 8.06 -2.91 -0.02 5.21 16 38 H 0.14 4.39 7.66 -2.91 -0.02 4.37 16 39 H 0.10 1.63 8.10 -2.38 -0.02 1.61 16 40 H 0.08 1.64 8.10 -2.39 -0.02 1.62 16 41 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.40 3.22 9.12 -74.06 -0.68 2.55 16 44 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 45 H 0.16 5.26 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -68.84 387.18 2.20 -66.63 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.34 Total: 24.83 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 6.65 Total: 15.51 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -4.72 Total: -114.23 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -2.09 Total: -37.25 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -68.84 2.20 -66.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199757922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.647 kcal (2) G-P(sol) polarization free energy of solvation -68.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds