Wall clock time and date at job start Sat Apr 11 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47364 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47178 * 304.99482 * 11 10 9 13 13 C 1.54803 * 109.47334 * 184.99867 * 11 10 9 14 14 N 1.45124 * 109.54078 * 172.12572 * 13 11 10 15 15 C 1.34780 * 118.75158 * 269.25672 * 14 13 11 16 16 O 1.21273 * 120.00448 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99525 * 179.97438 * 15 14 13 18 18 N 1.46501 * 109.46821 * 180.02562 * 17 15 14 19 19 C 1.36367 * 125.96462 * 269.69020 * 18 17 15 20 20 O 1.35628 * 125.98779 * 0.03862 * 19 18 17 21 21 N 1.30907 * 108.02210 * 179.88702 * 19 18 17 22 22 N 1.40112 * 107.94204 * 0.37531 * 21 19 18 23 23 C 1.30907 * 107.93888 * 359.76325 * 22 21 19 24 24 O 1.35628 * 125.98811 * 179.97438 * 23 22 21 25 25 C 1.47506 * 122.48679 * 89.28398 * 14 13 11 26 26 C 1.53567 * 111.03073 * 318.36342 * 25 14 13 27 27 C 1.51534 * 109.58054 * 320.02959 * 26 25 14 28 28 O 1.38020 * 109.47130 * 64.98927 * 11 10 9 29 29 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46865 * 300.00257 * 10 9 7 32 32 H 1.09001 * 109.47115 * 59.99779 * 10 9 7 33 33 H 1.09005 * 109.45683 * 292.14069 * 13 11 10 34 34 H 1.08997 * 109.45948 * 52.11495 * 13 11 10 35 35 H 1.08999 * 109.46961 * 300.00407 * 17 15 14 36 36 H 1.08999 * 109.46934 * 60.00202 * 17 15 14 37 37 H 0.96703 * 114.00378 * 90.00132 * 20 19 18 38 38 H 0.96704 * 113.99824 * 270.02054 * 24 23 22 39 39 H 1.08994 * 109.16971 * 78.77022 * 25 14 13 40 40 H 1.09008 * 109.16410 * 197.96793 * 25 14 13 41 41 H 1.09006 * 109.45201 * 80.05775 * 26 25 14 42 42 H 1.09000 * 109.45841 * 199.99057 * 26 25 14 43 43 H 1.09003 * 109.58923 * 211.17964 * 27 26 25 44 44 H 1.09000 * 109.59097 * 331.61494 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 1.0638 -4.8197 -0.0097 12 1 0.3832 -4.7145 0.8353 13 6 1.8340 -6.1570 0.1116 14 7 0.8918 -7.2444 0.3005 15 6 0.5499 -7.5952 1.5562 16 8 1.0273 -7.0051 2.5020 17 6 -0.4266 -8.7201 1.7847 18 7 -0.6314 -8.9041 3.2236 19 6 0.0888 -9.7294 4.0360 20 8 1.1202 -10.5227 3.6535 21 7 -0.3878 -9.6192 5.2502 22 7 -1.4486 -8.7046 5.2162 23 6 -1.5794 -8.2845 3.9833 24 8 -2.4973 -7.3902 3.5392 25 6 0.2946 -7.9806 -0.8296 26 6 -0.1016 -7.0234 -1.9631 27 6 -0.6979 -5.7601 -1.3759 28 8 0.3417 -4.8095 -1.1859 29 1 -0.4851 -0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0015 31 1 2.6812 -3.7125 -0.9040 32 1 2.6880 -3.7165 0.8760 33 1 2.4089 -6.3287 -0.7985 34 1 2.5104 -6.1103 0.9651 35 1 -1.3777 -8.4775 1.3107 36 1 -0.0297 -9.6391 1.3534 37 1 1.9861 -10.0956 3.7078 38 1 -3.3269 -7.7910 3.2456 39 1 1.0174 -8.7035 -1.2078 40 1 -0.5923 -8.5109 -0.4826 41 1 0.7817 -6.7694 -2.5492 42 1 -0.8368 -7.5069 -2.6064 43 1 -1.4429 -5.3550 -2.0608 44 1 -1.1648 -5.9876 -0.4176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201944621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:59 Heat of formation + Delta-G solvation = -27.157929 kcal Electronic energy + Delta-G solvation = -30993.955584 eV Core-core repulsion = 26565.016320 eV Total energy + Delta-G solvation = -4428.939264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.68653 -40.86792 -38.80900 -38.54611 -37.45151 -36.04003 -34.96066 -34.74232 -33.16993 -31.02661 -29.91165 -29.85838 -27.95873 -26.80140 -24.90244 -23.15068 -22.98724 -22.33683 -22.03465 -21.23427 -20.08416 -19.27133 -18.82482 -18.18144 -17.41305 -17.22476 -16.79211 -16.65669 -16.41796 -16.15311 -15.74401 -15.32705 -14.98674 -14.46072 -14.21348 -14.05006 -13.72125 -13.59621 -13.33684 -13.22196 -13.07452 -12.96684 -12.77061 -12.58791 -12.23486 -11.89747 -11.71173 -11.62709 -11.26480 -10.96752 -10.89704 -10.68875 -10.55391 -10.46917 -10.03492 -9.97657 -9.75697 -9.68149 -9.21186 -8.86849 -8.85196 -6.95727 -6.06036 -3.04886 1.05539 1.36188 1.88910 1.97327 2.42739 2.88254 3.33536 3.54459 3.60021 3.66920 3.73462 3.75415 3.85527 4.21433 4.29088 4.38729 4.61902 4.71304 4.81823 4.82623 4.97549 5.01713 5.07752 5.18052 5.21402 5.27563 5.35360 5.59315 5.64601 5.67132 5.71079 5.75714 5.87916 6.06467 6.14113 6.50415 6.61924 6.64093 6.73274 6.92681 7.54703 7.57352 7.76990 7.84223 8.80904 9.27622 10.14177 10.29410 11.42843 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.002898 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.415731 B = 9659.660139 C =10527.091464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.046 4.046 3 Si 1.084 2.916 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.332 4.332 8 H 0.065 0.935 9 N -0.737 5.737 10 C 0.172 3.828 11 C 0.088 3.912 12 H 0.051 0.949 13 C 0.081 3.919 14 N -0.602 5.602 15 C 0.490 3.510 16 O -0.513 6.513 17 C 0.084 3.916 18 N -0.499 5.499 19 C 0.414 3.586 20 O -0.439 6.439 21 N -0.292 5.292 22 N -0.293 5.293 23 C 0.419 3.581 24 O -0.430 6.430 25 C 0.102 3.898 26 C -0.167 4.167 27 C 0.072 3.928 28 O -0.369 6.369 29 H 0.255 0.745 30 H 0.370 0.630 31 H 0.029 0.971 32 H 0.035 0.965 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.415 0.585 38 H 0.410 0.590 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.880 -26.453 -3.318 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.243 4.243 3 Si 0.915 3.085 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.462 4.462 8 H 0.083 0.917 9 N -0.383 5.383 10 C 0.044 3.956 11 C 0.028 3.972 12 H 0.069 0.931 13 C -0.042 4.042 14 N -0.336 5.336 15 C 0.275 3.725 16 O -0.387 6.387 17 C -0.044 4.044 18 N -0.220 5.220 19 C 0.105 3.895 20 O -0.239 6.239 21 N -0.135 5.135 22 N -0.137 5.137 23 C 0.109 3.891 24 O -0.229 6.229 25 C -0.021 4.021 26 C -0.205 4.205 27 C -0.005 4.005 28 O -0.287 6.287 29 H 0.066 0.934 30 H 0.203 0.797 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.274 0.726 38 H 0.268 0.732 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.699 -24.542 -1.386 24.729 hybrid contribution 0.096 -1.769 -1.624 2.403 sum -2.602 -26.311 -3.010 26.610 Atomic orbital electron populations 1.70829 1.06044 1.28466 1.53592 1.25788 0.97085 1.00971 1.00457 0.83180 0.73827 0.75251 0.76233 1.22311 1.22164 1.21386 1.20051 0.92003 0.85748 1.48444 0.91732 1.42213 1.04991 1.00477 1.90591 1.20530 0.92227 0.84149 0.98683 1.22294 0.93694 0.94056 0.87147 0.93106 1.22492 0.91953 0.86000 1.03736 1.47932 1.45186 1.35202 1.05281 1.20695 0.83161 0.84991 0.83695 1.90838 1.53388 1.53570 1.40951 1.21808 1.02209 1.00602 0.79801 1.46641 1.30047 1.35429 1.09870 1.21257 0.92142 0.89804 0.86346 1.84877 1.16446 1.35572 1.87026 1.78372 1.08096 1.14510 1.12550 1.78397 1.13031 1.10025 1.12206 1.21296 0.89938 0.90824 0.87017 1.85075 1.26634 1.27834 1.83400 1.22099 0.98168 0.94422 0.87373 1.22517 1.03284 0.96966 0.97783 1.22140 0.89978 0.88573 0.99790 1.86454 1.47821 1.55580 1.38805 0.93351 0.79712 0.95353 0.94751 0.89353 0.88669 0.85679 0.85236 0.72606 0.73160 0.90668 0.90260 0.89591 0.89290 0.89033 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.14 13.70 55.49 0.76 -29.38 16 2 C -0.05 -1.37 5.50 -17.43 -0.10 -1.46 16 3 Si 1.08 26.70 29.92 -169.99 -5.09 21.61 16 4 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 7 C -0.33 -9.75 9.99 -15.06 -0.15 -9.90 16 8 H 0.06 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.74 -19.62 5.54 -59.91 -0.33 -19.95 16 10 C 0.17 3.63 5.92 -4.05 -0.02 3.60 16 11 C 0.09 1.48 2.68 -25.79 -0.07 1.41 16 12 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 13 C 0.08 1.02 4.86 -3.83 -0.02 1.00 16 14 N -0.60 -5.67 2.19 -172.47 -0.38 -6.04 16 15 C 0.49 5.19 7.70 -10.98 -0.08 5.11 16 16 O -0.51 -8.09 15.86 5.56 0.09 -8.00 16 17 C 0.08 0.54 4.83 -5.19 -0.03 0.52 16 18 N -0.50 -4.94 2.25 -121.35 -0.27 -5.21 16 19 C 0.41 4.55 9.15 -88.81 -0.81 3.74 16 20 O -0.44 -3.35 13.58 -18.58 -0.25 -3.61 16 21 N -0.29 -4.13 12.72 29.65 0.38 -3.75 16 22 N -0.29 -4.26 12.72 29.66 0.38 -3.88 16 23 C 0.42 4.91 9.15 -88.80 -0.81 4.09 16 24 O -0.43 -3.98 13.58 -18.58 -0.25 -4.24 16 25 C 0.10 0.54 6.00 -3.20 -0.02 0.52 16 26 C -0.17 -1.15 5.79 -27.18 -0.16 -1.31 16 27 C 0.07 0.79 6.37 36.42 0.23 1.02 16 28 O -0.37 -5.99 9.38 -26.55 -0.25 -6.24 16 29 H 0.26 8.09 6.77 -40.82 -0.28 7.81 16 30 H 0.37 10.20 6.49 -40.82 -0.26 9.94 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 34 H 0.10 1.31 7.27 -51.93 -0.38 0.93 16 35 H 0.13 0.45 7.41 -51.93 -0.38 0.07 16 36 H 0.13 0.44 8.04 -51.93 -0.42 0.02 16 37 H 0.41 1.61 9.06 45.56 0.41 2.03 16 38 H 0.41 1.09 9.06 45.56 0.41 1.50 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.20 5.88 -51.92 -0.31 -0.11 16 41 H 0.09 0.71 8.01 -51.93 -0.42 0.29 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.49 7.40 -51.93 -0.38 0.10 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -42.77 370.88 -5.83 -48.60 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.16 Total: 6.16 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -2.04 Total: 8.35 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: 0.53 Total: -68.22 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.67 Total: -22.08 kcal Atomic # 14 Polarization: 26.70 SS G_CDS: -5.09 Total: 21.61 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -42.77 -5.83 -48.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201944621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.440 kcal (2) G-P(sol) polarization free energy of solvation -42.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds