Wall clock time and date at job start Sat Apr 11 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48498 * 109.47145 * 274.14407 * 3 2 1 5 5 H 1.48501 * 109.47013 * 34.14395 * 3 2 1 6 6 H 1.48495 * 109.47170 * 154.14125 * 3 2 1 7 7 C 1.38811 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99696 * 170.42631 * 7 2 1 9 9 N 1.36932 * 120.00123 * 350.41344 * 7 2 1 10 10 C 1.47022 * 125.65038 * 169.94297 * 9 7 2 11 11 C 1.54330 * 107.27133 * 178.97841 * 10 9 7 12 12 H 1.08998 * 110.71719 * 96.35226 * 11 10 9 13 13 N 1.46504 * 110.71775 * 219.44549 * 11 10 9 14 14 C 1.34776 * 119.99979 * 273.54675 * 13 11 10 15 15 O 1.21283 * 120.00028 * 359.72833 * 14 13 11 16 16 C 1.50693 * 119.99995 * 180.02562 * 14 13 11 17 17 C 1.52999 * 109.47271 * 179.72295 * 16 14 13 18 18 C 1.52996 * 109.47586 * 179.97438 * 17 16 14 19 19 N 1.46498 * 109.47724 * 180.02562 * 18 17 16 20 20 C 1.36372 * 125.96515 * 269.69070 * 19 18 17 21 21 O 1.35627 * 125.98594 * 0.03507 * 20 19 18 22 22 N 1.30907 * 108.02404 * 179.88362 * 20 19 18 23 23 N 1.40120 * 107.93893 * 0.37498 * 22 20 19 24 24 C 1.30910 * 107.94023 * 359.76122 * 23 22 20 25 25 O 1.35621 * 125.99004 * 179.97438 * 24 23 22 26 26 C 1.55158 * 102.94180 * 337.81086 * 11 10 9 27 27 H 1.09003 * 110.99825 * 153.57778 * 26 11 10 28 28 O 1.42906 * 111.00163 * 277.42326 * 26 11 10 29 29 C 1.47432 * 125.64982 * 349.99164 * 9 7 2 30 30 H 0.96996 * 120.00363 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.87825 * 59.56479 * 10 9 7 32 32 H 1.08993 * 110.01306 * 298.47257 * 10 9 7 33 33 H 0.96994 * 120.00041 * 93.55194 * 13 11 10 34 34 H 1.08996 * 109.47366 * 299.72709 * 16 14 13 35 35 H 1.09008 * 109.47257 * 59.72683 * 16 14 13 36 36 H 1.09003 * 109.47403 * 299.99816 * 17 16 14 37 37 H 1.08997 * 109.47140 * 60.00067 * 17 16 14 38 38 H 1.09005 * 109.47114 * 300.00385 * 18 17 16 39 39 H 1.09002 * 109.47279 * 59.99895 * 18 17 16 40 40 H 0.96705 * 113.99535 * 89.99732 * 21 20 19 41 41 H 0.96694 * 114.00291 * 270.03199 * 25 24 23 42 42 H 0.96699 * 113.99377 * 180.02562 * 28 26 11 43 43 H 1.09000 * 110.36432 * 322.92609 * 29 9 7 44 44 H 1.09001 * 110.36518 * 85.24565 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4101 2.0970 -1.3964 5 1 1.4942 2.6258 0.7858 6 1 3.5888 1.4165 0.6106 7 6 2.0103 -1.2021 -0.0005 8 1 3.0791 -1.2085 -0.1561 9 7 1.3401 -2.3798 0.1964 10 6 1.9022 -3.7263 0.0157 11 6 0.7934 -4.7378 0.3753 12 1 0.2749 -5.0765 -0.5217 13 7 1.3490 -5.8760 1.1115 14 6 1.8552 -6.9299 0.4411 15 8 1.8463 -6.9382 -0.7717 16 6 2.4262 -8.1009 1.1984 17 6 2.9233 -9.1556 0.2077 18 6 3.5036 -10.3442 0.9765 19 7 3.9801 -11.3539 0.0279 20 6 3.2479 -12.3882 -0.4759 21 8 1.9512 -12.6617 -0.1871 22 7 4.0148 -13.0688 -1.2896 23 7 5.2771 -12.4605 -1.3030 24 6 5.2350 -11.4268 -0.5009 25 8 6.2600 -10.5776 -0.2408 26 6 -0.1539 -3.9075 1.2812 27 1 -1.1721 -4.2946 1.2403 28 8 0.3250 -3.8727 2.6272 29 6 -0.0651 -2.5077 0.6238 30 1 -0.4850 0.8400 0.0004 31 1 2.7573 -3.8628 0.6777 32 1 2.2097 -3.8661 -1.0205 33 1 1.3525 -5.8711 2.0814 34 1 3.2577 -7.7630 1.8170 35 1 1.6537 -8.5345 1.8335 36 1 2.0918 -9.4936 -0.4108 37 1 3.6958 -8.7221 -0.4273 38 1 4.3352 -10.0060 1.5948 39 1 2.7314 -10.7780 1.6119 40 1 1.3176 -12.2305 -0.7767 41 1 6.8111 -10.8439 0.5077 42 1 -0.2349 -3.3654 3.2307 43 1 -0.3133 -1.7320 1.3483 44 1 -0.7304 -2.4502 -0.2377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219919534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:10 Heat of formation + Delta-G solvation = -42.813172 kcal Electronic energy + Delta-G solvation = -29410.288625 eV Core-core repulsion = 24980.670499 eV Total energy + Delta-G solvation = -4429.618126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.64145 -39.89485 -38.57799 -38.06895 -37.48775 -36.04815 -34.84376 -34.05117 -32.78108 -31.68796 -29.95624 -28.84114 -27.81423 -26.70751 -24.53601 -23.17145 -23.10224 -22.10992 -20.84778 -20.39610 -19.83961 -19.24141 -19.08066 -17.63225 -17.19228 -17.03159 -16.80012 -16.44643 -16.03916 -15.80199 -15.43301 -14.88904 -14.59161 -14.41410 -14.07954 -13.98260 -13.43284 -13.16380 -13.15346 -12.88259 -12.81010 -12.74375 -12.48754 -12.24727 -11.93368 -11.64540 -11.42424 -11.37998 -11.06178 -10.89027 -10.87715 -10.70571 -10.50479 -10.41503 -10.18220 -9.90027 -9.82243 -9.81095 -9.35966 -8.82575 -8.67807 -6.87421 -5.82931 -3.14558 1.12813 1.33643 1.85105 2.66741 2.83601 3.14116 3.35480 3.41258 3.42550 3.44677 3.96134 4.25047 4.44459 4.45112 4.51234 4.65772 4.76682 4.82964 4.88383 4.99826 5.16520 5.23466 5.26536 5.27373 5.40748 5.56535 5.64282 5.70963 5.76244 5.83134 5.94304 6.16543 6.44347 6.60993 6.65762 6.85284 6.90627 7.20082 7.34194 7.50764 7.65159 7.68667 7.98165 8.17397 8.33279 9.10734 9.72550 10.38213 11.30685 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021133 B = 0.001989 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.614691 B =14071.028890 C =14807.123830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.595 5.595 10 C 0.132 3.868 11 C 0.143 3.857 12 H 0.100 0.900 13 N -0.707 5.707 14 C 0.508 3.492 15 O -0.544 6.544 16 C -0.136 4.136 17 C -0.119 4.119 18 C 0.100 3.900 19 N -0.510 5.510 20 C 0.407 3.593 21 O -0.437 6.437 22 N -0.297 5.297 23 N -0.298 5.298 24 C 0.408 3.592 25 O -0.433 6.433 26 C 0.066 3.934 27 H 0.061 0.939 28 O -0.562 6.562 29 C 0.149 3.851 30 H 0.253 0.747 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.408 0.592 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.414 0.586 41 H 0.411 0.589 42 H 0.379 0.621 43 H 0.078 0.922 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.510 -21.614 8.751 23.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.322 5.322 10 C 0.005 3.995 11 C 0.038 3.962 12 H 0.118 0.882 13 N -0.359 5.359 14 C 0.293 3.707 15 O -0.422 6.422 16 C -0.177 4.177 17 C -0.158 4.158 18 C -0.023 4.023 19 N -0.230 5.230 20 C 0.097 3.903 21 O -0.238 6.238 22 N -0.142 5.142 23 N -0.142 5.142 24 C 0.098 3.902 25 O -0.232 6.232 26 C 0.006 3.994 27 H 0.078 0.922 28 O -0.368 6.368 29 C 0.023 3.977 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.243 0.757 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.273 0.727 41 H 0.270 0.730 42 H 0.227 0.773 43 H 0.096 0.904 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.455 -22.843 6.581 24.022 hybrid contribution -0.611 2.568 1.715 3.148 sum 2.844 -20.275 8.295 22.091 Atomic orbital electron populations 1.69913 1.04985 1.25294 1.56843 1.24807 0.95680 0.97857 1.02115 0.86088 0.78732 0.83273 0.77586 1.21546 1.21595 1.20592 1.19029 0.91222 0.82599 1.42404 0.90580 1.44267 1.09044 0.99756 1.79127 1.21587 0.94361 0.85579 0.97985 1.22127 0.94910 0.84816 0.94368 0.88225 1.45852 1.61206 1.17932 1.10875 1.20489 0.78166 0.83727 0.88295 1.90733 1.56657 1.80781 1.13980 1.21526 1.02530 0.94601 0.99024 1.21668 1.02368 0.93613 0.98141 1.22042 1.01617 0.87975 0.90679 1.47152 1.11779 1.24858 1.39175 1.21328 0.87483 0.86915 0.94587 1.84918 1.09247 1.71306 1.58282 1.78375 0.97434 1.21898 1.16458 1.78382 1.11355 1.05391 1.19114 1.21341 0.81940 0.91943 0.94944 1.85007 1.37764 1.45285 1.55191 1.23600 0.94661 0.98743 0.82423 0.92164 1.86240 1.55210 1.76256 1.19059 1.22067 0.86930 0.91056 0.97659 0.93661 0.95392 0.95409 0.75687 0.88369 0.88541 0.90584 0.89790 0.88290 0.87951 0.72691 0.73049 0.77339 0.90430 0.94529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.30 10.68 55.49 0.59 -25.71 16 2 C -0.01 -0.23 5.40 -17.43 -0.09 -0.33 16 3 Si 0.91 21.82 29.56 -169.99 -5.03 16.80 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.22 -6.23 10.24 -15.06 -0.15 -6.39 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 9 N -0.60 -15.01 3.39 -170.07 -0.58 -15.59 16 10 C 0.13 2.85 6.99 -3.06 -0.02 2.83 16 11 C 0.14 2.48 3.12 -66.09 -0.21 2.27 16 12 H 0.10 1.80 7.69 -51.93 -0.40 1.40 16 13 N -0.71 -9.52 5.09 -52.03 -0.26 -9.79 16 14 C 0.51 6.52 7.83 -10.99 -0.09 6.43 16 15 O -0.54 -9.36 15.71 5.55 0.09 -9.28 16 16 C -0.14 -0.96 5.70 -27.89 -0.16 -1.12 16 17 C -0.12 -0.88 4.83 -26.73 -0.13 -1.01 16 18 C 0.10 0.49 6.01 -4.04 -0.02 0.47 16 19 N -0.51 -4.05 2.76 -120.06 -0.33 -4.38 16 20 C 0.41 3.79 9.15 -88.81 -0.81 2.97 16 21 O -0.44 -2.79 13.58 -18.58 -0.25 -3.04 16 22 N -0.30 -3.72 12.72 29.65 0.38 -3.35 16 23 N -0.30 -3.76 12.72 29.65 0.38 -3.39 16 24 C 0.41 3.89 9.15 -88.80 -0.81 3.07 16 25 O -0.43 -2.96 13.58 -18.56 -0.25 -3.21 16 26 C 0.07 1.11 4.28 -24.59 -0.11 1.00 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 O -0.56 -8.49 12.23 -35.23 -0.43 -8.92 16 29 C 0.15 3.35 5.16 -2.53 -0.01 3.33 16 30 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.03 0.61 8.03 -51.93 -0.42 0.20 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.41 4.71 7.57 -40.82 -0.31 4.40 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.41 0.77 9.06 45.56 0.41 1.18 16 41 H 0.41 0.43 9.06 45.56 0.41 0.84 16 42 H 0.38 4.45 9.12 45.56 0.42 4.86 16 43 H 0.08 1.91 6.94 -51.93 -0.36 1.55 16 44 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -39.17 377.94 -6.21 -45.38 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -3.59 Total: 5.24 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: -2.62 Total: 13.53 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: 0.17 Total: -62.19 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.85 Total: -24.45 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.17 -6.21 -45.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219919534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.565 kcal (2) G-P(sol) polarization free energy of solvation -39.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds