Wall clock time and date at job start Sat Apr 11 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48498 * 109.47145 * 274.14407 * 3 2 1 5 5 H 1.48501 * 109.47013 * 34.14395 * 3 2 1 6 6 H 1.48495 * 109.47170 * 154.14125 * 3 2 1 7 7 C 1.38811 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99696 * 170.42631 * 7 2 1 9 9 N 1.36932 * 120.00123 * 350.41344 * 7 2 1 10 10 C 1.47022 * 125.65038 * 169.94297 * 9 7 2 11 11 C 1.54330 * 107.27133 * 178.97841 * 10 9 7 12 12 H 1.08998 * 110.71719 * 96.35226 * 11 10 9 13 13 N 1.46504 * 110.71775 * 219.44549 * 11 10 9 14 14 C 1.34776 * 119.99979 * 273.54675 * 13 11 10 15 15 O 1.21283 * 120.00028 * 359.72833 * 14 13 11 16 16 C 1.50693 * 119.99995 * 180.02562 * 14 13 11 17 17 C 1.52999 * 109.47271 * 179.72295 * 16 14 13 18 18 C 1.52996 * 109.47586 * 179.97438 * 17 16 14 19 19 N 1.46498 * 109.47724 * 180.02562 * 18 17 16 20 20 C 1.36372 * 125.96515 * 269.69070 * 19 18 17 21 21 O 1.35627 * 125.98594 * 0.03507 * 20 19 18 22 22 N 1.30907 * 108.02404 * 179.88362 * 20 19 18 23 23 N 1.40120 * 107.93893 * 0.37498 * 22 20 19 24 24 C 1.30910 * 107.94023 * 359.76122 * 23 22 20 25 25 O 1.35621 * 125.99004 * 179.97438 * 24 23 22 26 26 C 1.55158 * 102.94180 * 337.81086 * 11 10 9 27 27 H 1.09003 * 110.99825 * 153.57778 * 26 11 10 28 28 O 1.42906 * 111.00163 * 277.42326 * 26 11 10 29 29 C 1.47432 * 125.64982 * 349.99164 * 9 7 2 30 30 H 0.96996 * 120.00363 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.87825 * 59.56479 * 10 9 7 32 32 H 1.08993 * 110.01306 * 298.47257 * 10 9 7 33 33 H 0.96994 * 120.00041 * 93.55194 * 13 11 10 34 34 H 1.08996 * 109.47366 * 299.72709 * 16 14 13 35 35 H 1.09008 * 109.47257 * 59.72683 * 16 14 13 36 36 H 1.09003 * 109.47403 * 299.99816 * 17 16 14 37 37 H 1.08997 * 109.47140 * 60.00067 * 17 16 14 38 38 H 1.09005 * 109.47114 * 300.00385 * 18 17 16 39 39 H 1.09002 * 109.47279 * 59.99895 * 18 17 16 40 40 H 0.96705 * 113.99535 * 89.99732 * 21 20 19 41 41 H 0.96694 * 114.00291 * 270.03199 * 25 24 23 42 42 H 0.96699 * 113.99377 * 180.02562 * 28 26 11 43 43 H 1.09000 * 110.36432 * 322.92609 * 29 9 7 44 44 H 1.09001 * 110.36518 * 85.24565 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4101 2.0970 -1.3964 5 1 1.4942 2.6258 0.7858 6 1 3.5888 1.4165 0.6106 7 6 2.0103 -1.2021 -0.0005 8 1 3.0791 -1.2085 -0.1561 9 7 1.3401 -2.3798 0.1964 10 6 1.9022 -3.7263 0.0157 11 6 0.7934 -4.7378 0.3753 12 1 0.2749 -5.0765 -0.5217 13 7 1.3490 -5.8760 1.1115 14 6 1.8552 -6.9299 0.4411 15 8 1.8463 -6.9382 -0.7717 16 6 2.4262 -8.1009 1.1984 17 6 2.9233 -9.1556 0.2077 18 6 3.5036 -10.3442 0.9765 19 7 3.9801 -11.3539 0.0279 20 6 3.2479 -12.3882 -0.4759 21 8 1.9512 -12.6617 -0.1871 22 7 4.0148 -13.0688 -1.2896 23 7 5.2771 -12.4605 -1.3030 24 6 5.2350 -11.4268 -0.5009 25 8 6.2600 -10.5776 -0.2408 26 6 -0.1539 -3.9075 1.2812 27 1 -1.1721 -4.2946 1.2403 28 8 0.3250 -3.8727 2.6272 29 6 -0.0651 -2.5077 0.6238 30 1 -0.4850 0.8400 0.0004 31 1 2.7573 -3.8628 0.6777 32 1 2.2097 -3.8661 -1.0205 33 1 1.3525 -5.8711 2.0814 34 1 3.2577 -7.7630 1.8170 35 1 1.6537 -8.5345 1.8335 36 1 2.0918 -9.4936 -0.4108 37 1 3.6958 -8.7221 -0.4273 38 1 4.3352 -10.0060 1.5948 39 1 2.7314 -10.7780 1.6119 40 1 1.3176 -12.2305 -0.7767 41 1 6.8111 -10.8439 0.5077 42 1 -0.2349 -3.3654 3.2307 43 1 -0.3133 -1.7320 1.3483 44 1 -0.7304 -2.4502 -0.2377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219919534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:09 Heat of formation + Delta-G solvation = -83.172995 kcal Electronic energy + Delta-G solvation = -29412.038758 eV Core-core repulsion = 24980.670499 eV Total energy + Delta-G solvation = -4431.368259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.29417 -41.06025 -39.46766 -39.11502 -38.03139 -36.67233 -36.38139 -35.41416 -33.76085 -33.25766 -30.67197 -30.43717 -29.11008 -27.87423 -26.29720 -23.91252 -23.81382 -22.74969 -22.42257 -21.64897 -21.13076 -19.81990 -19.65188 -19.19548 -18.26807 -18.14122 -17.67027 -17.22604 -16.93776 -16.76895 -16.68342 -16.36024 -15.91608 -15.41474 -15.23894 -14.94357 -14.67973 -14.48538 -14.36330 -13.94810 -13.72409 -13.58523 -13.34899 -13.17697 -13.14382 -12.88876 -12.84504 -12.75876 -12.33906 -12.30275 -12.13787 -11.96217 -11.93391 -11.88581 -11.49647 -11.10198 -10.93608 -10.79960 -10.74717 -10.54611 -10.06826 -8.90516 -7.93438 -5.27888 0.52728 0.75562 1.15988 1.44485 1.45180 1.55171 1.67598 2.15222 2.23686 2.47309 2.91739 3.17674 3.27177 3.52547 3.56282 3.72458 3.81637 3.90611 3.93034 4.07791 4.17621 4.28131 4.32591 4.40706 4.43644 4.50118 4.68751 4.70497 4.73317 4.84620 5.01272 5.05050 5.18048 5.35645 5.35885 5.37578 5.52650 5.59839 6.14074 6.25560 6.47815 6.65636 6.81708 6.89420 7.04140 7.33811 7.68931 8.34014 9.17904 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021133 B = 0.001989 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.614691 B =14071.028890 C =14807.123830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.978 3.022 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.616 5.616 10 C 0.131 3.869 11 C 0.155 3.845 12 H 0.091 0.909 13 N -0.698 5.698 14 C 0.502 3.498 15 O -0.594 6.594 16 C -0.122 4.122 17 C -0.114 4.114 18 C 0.103 3.897 19 N -0.505 5.505 20 C 0.418 3.582 21 O -0.433 6.433 22 N -0.345 5.345 23 N -0.346 5.346 24 C 0.418 3.582 25 O -0.436 6.436 26 C 0.093 3.907 27 H 0.098 0.902 28 O -0.560 6.560 29 C 0.149 3.851 30 H 0.251 0.749 31 H 0.026 0.974 32 H 0.002 0.998 33 H 0.421 0.579 34 H 0.126 0.874 35 H 0.138 0.862 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.434 0.566 41 H 0.436 0.564 42 H 0.397 0.603 43 H 0.052 0.948 44 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.395 -22.489 11.633 25.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.251 4.251 3 Si 0.806 3.194 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.342 5.342 10 C 0.005 3.995 11 C 0.048 3.952 12 H 0.109 0.891 13 N -0.350 5.350 14 C 0.290 3.710 15 O -0.475 6.475 16 C -0.162 4.162 17 C -0.153 4.153 18 C -0.019 4.019 19 N -0.224 5.224 20 C 0.106 3.894 21 O -0.237 6.237 22 N -0.189 5.189 23 N -0.191 5.191 24 C 0.107 3.893 25 O -0.240 6.240 26 C 0.033 3.967 27 H 0.115 0.885 28 O -0.368 6.368 29 C 0.023 3.977 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.020 0.980 33 H 0.259 0.741 34 H 0.144 0.856 35 H 0.156 0.844 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.296 0.704 41 H 0.299 0.701 42 H 0.247 0.753 43 H 0.071 0.929 44 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 3.338 -23.736 9.530 25.795 hybrid contribution -0.572 2.892 0.813 3.058 sum 2.766 -20.844 10.343 23.433 Atomic orbital electron populations 1.70093 1.06122 1.25734 1.57387 1.25600 0.96613 1.00855 1.02078 0.85087 0.77842 0.79141 0.77345 1.21548 1.21273 1.19651 1.19324 0.91454 0.84182 1.42646 0.91134 1.44563 1.10135 1.00355 1.79189 1.21652 0.95899 0.85558 0.96417 1.21705 0.93364 0.85280 0.94843 0.89140 1.45725 1.61122 1.16849 1.11317 1.21588 0.76833 0.84528 0.88010 1.90726 1.58375 1.81770 1.16582 1.21560 1.04289 0.91749 0.98556 1.21566 1.01033 0.94593 0.98107 1.22266 1.03403 0.86335 0.89846 1.47214 1.11028 1.24913 1.39290 1.21352 0.88181 0.86504 0.93317 1.84896 1.08288 1.71723 1.58781 1.78239 0.98112 1.23798 1.18775 1.78247 1.12128 1.07458 1.21280 1.21367 0.82879 0.91119 0.93975 1.84977 1.37566 1.44716 1.56760 1.23230 0.96319 0.94512 0.82662 0.88463 1.86203 1.56033 1.76410 1.18161 1.21994 0.85072 0.94217 0.96380 0.93981 0.95627 0.98042 0.74070 0.85620 0.84418 0.91793 0.93147 0.85567 0.85126 0.70364 0.70128 0.75271 0.92929 0.97438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.99 10.68 21.65 0.23 -54.76 16 2 C -0.06 -3.25 5.40 84.86 0.46 -2.79 16 3 Si 0.98 45.27 29.56 68.60 2.03 47.30 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.25 -14.05 10.24 84.03 0.86 -13.19 16 8 H 0.07 3.96 7.85 -2.91 -0.02 3.94 16 9 N -0.62 -31.79 3.39 -691.98 -2.35 -34.14 16 10 C 0.13 5.78 6.99 86.73 0.61 6.39 16 11 C 0.15 5.22 3.12 46.18 0.14 5.37 16 12 H 0.09 3.26 7.69 -2.39 -0.02 3.24 16 13 N -0.70 -17.03 5.09 -436.91 -2.22 -19.26 16 14 C 0.50 11.80 7.83 87.65 0.69 12.48 16 15 O -0.59 -20.32 15.71 -3.04 -0.05 -20.37 16 16 C -0.12 -1.20 5.70 29.85 0.17 -1.03 16 17 C -0.11 -1.38 4.83 30.59 0.15 -1.24 16 18 C 0.10 0.61 6.01 86.38 0.52 1.13 16 19 N -0.50 -7.00 2.76 -755.18 -2.08 -9.08 16 20 C 0.42 7.26 9.15 179.72 1.65 8.90 16 21 O -0.43 -4.60 13.58 -89.40 -1.21 -5.81 16 22 N -0.34 -8.72 12.72 -173.66 -2.21 -10.93 16 23 N -0.35 -8.88 12.72 -173.66 -2.21 -11.09 16 24 C 0.42 7.55 9.15 179.71 1.65 9.19 16 25 O -0.44 -5.29 13.58 -89.33 -1.21 -6.50 16 26 C 0.09 2.96 4.28 31.98 0.14 3.10 16 27 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 28 O -0.56 -15.27 12.23 -148.98 -1.82 -17.09 16 29 C 0.15 6.81 5.16 86.85 0.45 7.25 16 30 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 31 H 0.03 1.13 8.03 -2.39 -0.02 1.11 16 32 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.42 8.07 7.57 -92.71 -0.70 7.37 16 34 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.14 0.36 8.14 -2.38 -0.02 0.34 16 36 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 37 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 38 H 0.13 0.13 8.14 -2.38 -0.02 0.11 16 39 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.43 0.69 9.06 -74.05 -0.67 0.02 16 41 H 0.44 -0.05 9.06 -74.06 -0.67 -0.73 16 42 H 0.40 8.07 9.12 -74.06 -0.68 7.40 16 43 H 0.05 2.64 6.94 -2.39 -0.02 2.62 16 44 H 0.01 0.39 8.07 -2.39 -0.02 0.37 16 Total: -1.00 -90.91 377.94 -7.26 -98.17 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -1.62 Total: 7.99 kcal Atomic # 6 Polarization: 28.09 SS G_CDS: 7.47 Total: 35.56 kcal Atomic # 7 Polarization: -128.41 SS G_CDS: -10.84 Total: -139.25 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -4.30 Total: -49.78 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -90.91 -7.26 -98.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219919534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.001 kcal (2) G-P(sol) polarization free energy of solvation -90.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds