Wall clock time and date at job start Sat Apr 11 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99712 * 2 1 4 4 H 1.48504 * 109.46945 * 239.99386 * 3 2 1 5 5 H 1.48491 * 109.47441 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47353 * 120.00001 * 3 2 1 7 7 C 1.37877 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99671 * 188.46047 * 7 2 1 9 9 C 1.50696 * 120.00110 * 8.45867 * 7 2 1 10 10 H 1.09007 * 109.46832 * 185.45974 * 9 7 2 11 11 O 1.42905 * 109.47134 * 305.45838 * 9 7 2 12 12 C 1.35511 * 116.99900 * 270.00190 * 11 9 7 13 13 C 1.39440 * 120.46340 * 180.02562 * 12 11 9 14 14 C 1.38194 * 118.50697 * 179.97438 * 13 12 11 15 15 N 1.32465 * 119.27083 * 359.74479 * 14 13 12 16 16 C 1.32463 * 120.88303 * 0.50560 * 15 14 13 17 17 N 1.38397 * 119.18799 * 179.75985 * 16 15 14 18 18 C 1.47014 * 110.99673 * 359.73250 * 17 16 15 19 19 C 1.53102 * 109.29473 * 177.62779 * 18 17 16 20 20 O 1.43022 * 109.25543 * 56.82561 * 19 18 17 21 21 C 1.43019 * 113.73978 * 301.33145 * 20 19 18 22 22 C 1.47017 * 111.03940 * 236.07357 * 17 16 15 23 23 N 1.32489 * 121.62918 * 359.48682 * 16 15 14 24 24 C 1.50694 * 109.47121 * 65.45932 * 9 7 2 25 25 C 1.38231 * 120.00349 * 269.27018 * 24 9 7 26 26 C 1.38233 * 120.00338 * 179.78823 * 25 24 9 27 27 C 1.38239 * 119.99552 * 0.44027 * 26 25 24 28 28 C 1.38230 * 120.00461 * 359.81484 * 27 26 25 29 29 C 1.38232 * 119.99750 * 359.97438 * 28 27 26 30 30 H 0.96991 * 119.99844 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.74302 * 359.97438 * 13 12 11 32 32 H 1.08003 * 120.36213 * 179.97438 * 14 13 12 33 33 H 1.08998 * 109.51127 * 57.66982 * 18 17 16 34 34 H 1.08998 * 109.50998 * 297.58508 * 18 17 16 35 35 H 1.08992 * 109.50927 * 176.75942 * 19 18 17 36 36 H 1.08999 * 109.50346 * 296.85030 * 19 18 17 37 37 H 1.08994 * 109.50858 * 178.60586 * 21 20 19 38 38 H 1.09004 * 109.50215 * 298.69397 * 21 20 19 39 39 H 1.09001 * 109.47117 * 62.41013 * 22 17 16 40 40 H 1.09005 * 109.53804 * 302.32682 * 22 17 16 41 41 H 1.08002 * 119.99583 * 359.97438 * 25 24 9 42 42 H 1.07993 * 120.00073 * 180.27288 * 26 25 24 43 43 H 1.08004 * 119.99691 * 179.83277 * 27 26 25 44 44 H 1.07995 * 120.00419 * 180.02562 * 28 27 26 45 45 H 1.08004 * 120.00005 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0758 -1.1990 0.1382 9 6 1.2634 -2.4921 -0.1909 10 1 1.9534 -3.3265 -0.0648 11 8 0.2161 -2.5898 0.7765 12 6 0.5231 -3.1774 1.9584 13 6 -0.4442 -3.3110 2.9538 14 6 -0.0871 -3.9172 4.1433 15 7 1.1532 -4.3550 4.3003 16 6 2.0523 -4.2099 3.3385 17 7 3.3395 -4.6760 3.5420 18 6 3.4769 -5.2782 4.8761 19 6 4.8950 -5.8325 5.0373 20 8 5.8399 -4.7817 4.8175 21 6 5.7353 -4.1738 3.5272 22 6 4.3259 -3.6028 3.3508 23 7 1.7486 -3.6343 2.1845 24 6 0.6727 -2.5337 -1.5766 25 6 -0.6053 -2.0555 -1.7979 26 6 -1.1454 -2.0896 -3.0698 27 6 -0.4110 -2.6103 -4.1189 28 6 0.8650 -3.0933 -3.8967 29 6 1.4068 -3.0552 -2.6255 30 1 -0.4849 0.8400 -0.0004 31 1 -1.4498 -2.9489 2.7986 32 1 -0.8124 -4.0359 4.9347 33 1 2.7551 -6.0875 4.9863 34 1 3.2935 -4.5207 5.6380 35 1 5.0187 -6.2283 6.0452 36 1 5.0593 -6.6284 4.3109 37 1 6.4668 -3.3701 3.4431 38 1 5.9252 -4.9209 2.7565 39 1 4.1562 -2.8179 4.0878 40 1 4.2239 -3.1884 2.3477 41 1 -1.1806 -1.6525 -0.9775 42 1 -2.1422 -1.7120 -3.2435 43 1 -0.8340 -2.6395 -5.1122 44 1 1.4389 -3.4997 -4.7163 45 1 2.4039 -3.4322 -2.4520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226753321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:23 Heat of formation + Delta-G solvation = 24.153588 kcal Electronic energy + Delta-G solvation = -30019.922854 eV Core-core repulsion = 26004.057888 eV Total energy + Delta-G solvation = -4015.864966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.82760 -39.28906 -38.48743 -37.14943 -35.50023 -33.26238 -32.44501 -31.14933 -30.97798 -30.16739 -29.84034 -27.28925 -26.85824 -24.55266 -23.59785 -22.76876 -22.51531 -21.56306 -20.46794 -20.30198 -18.15662 -17.50641 -16.67233 -16.14324 -15.99883 -15.71200 -15.38098 -15.09485 -14.95266 -14.71337 -14.53870 -14.49213 -14.23068 -13.99038 -13.61393 -13.45477 -13.08245 -12.75918 -12.47749 -12.33988 -11.83711 -11.81726 -11.66738 -11.46942 -11.39574 -11.05552 -10.78261 -10.73839 -10.60706 -10.37226 -10.21028 -10.18594 -9.78833 -9.60062 -9.51375 -8.91762 -8.70937 -8.44976 -8.02245 -7.89067 -7.65108 -6.23828 -4.40576 1.53063 1.91456 2.27026 2.37656 3.18161 3.23340 3.26485 3.31360 3.82362 4.06022 4.22689 4.37230 4.54491 4.77066 4.89728 4.95835 5.07206 5.11274 5.17641 5.24244 5.32340 5.51470 5.59586 5.62165 5.66362 5.74439 5.78039 5.88555 5.90315 5.97414 6.04142 6.06400 6.19956 6.41606 6.53677 6.58602 6.70426 6.76499 6.88943 7.04436 7.06862 7.22082 7.32247 7.45398 7.61879 7.70993 7.76245 7.86448 8.00253 8.30961 8.68812 8.78114 9.31001 10.74670 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011311 B = 0.003736 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.884171 B = 7492.580838 C = 7856.342944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.082 3.918 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.536 4.536 8 H 0.068 0.932 9 C 0.241 3.759 10 H 0.056 0.944 11 O -0.263 6.263 12 C 0.417 3.583 13 C -0.286 4.286 14 C 0.180 3.820 15 N -0.595 5.595 16 C 0.519 3.481 17 N -0.461 5.461 18 C 0.037 3.963 19 C 0.061 3.939 20 O -0.388 6.388 21 C 0.065 3.935 22 C 0.031 3.969 23 N -0.573 5.573 24 C -0.039 4.039 25 C -0.071 4.071 26 C -0.141 4.141 27 C -0.146 4.146 28 C -0.138 4.138 29 C -0.123 4.123 30 H 0.265 0.735 31 H 0.143 0.857 32 H 0.163 0.837 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.111 0.889 41 H 0.147 0.853 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 -8.129 5.017 9.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.126 4.126 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.572 4.572 8 H 0.086 0.914 9 C 0.187 3.813 10 H 0.074 0.926 11 O -0.162 6.162 12 C 0.228 3.772 13 C -0.311 4.311 14 C 0.019 3.981 15 N -0.322 5.322 16 C 0.162 3.838 17 N -0.182 5.182 18 C -0.091 4.091 19 C -0.016 4.016 20 O -0.306 6.306 21 C -0.012 4.012 22 C -0.096 4.096 23 N -0.310 5.310 24 C -0.039 4.039 25 C -0.090 4.090 26 C -0.159 4.159 27 C -0.165 4.165 28 C -0.156 4.156 29 C -0.141 4.141 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.180 0.820 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.129 0.871 41 H 0.165 0.835 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.312 -8.473 4.723 10.250 hybrid contribution -0.698 1.918 -0.114 2.044 sum 2.615 -6.555 4.609 8.429 Atomic orbital electron populations 1.69938 1.05914 1.27045 1.44987 1.25032 0.94849 0.99367 0.93315 0.86657 0.79915 0.82659 0.78914 1.19815 1.20980 1.20107 1.21190 0.94208 0.89831 1.51987 0.91410 1.19000 0.83958 0.97502 0.80822 0.92590 1.86532 1.41545 1.68004 1.20147 1.20066 0.86706 0.82655 0.87767 1.21770 1.02187 1.11586 0.95589 1.22559 0.91757 0.89028 0.94787 1.68208 1.03893 1.28042 1.32087 1.20488 0.90502 0.87688 0.85172 1.58572 1.00459 1.29830 1.29381 1.22643 0.97960 1.00655 0.87805 1.22768 0.86967 0.89774 1.02076 1.87974 1.56749 1.51437 1.34448 1.22732 0.95362 0.97884 0.85215 1.22866 0.90733 0.91286 1.04712 1.67684 1.21263 1.19506 1.22507 1.20018 0.93622 0.94722 0.95564 1.21467 0.95567 0.95008 0.96920 1.21123 0.99473 1.01453 0.93839 1.20862 0.95418 1.02087 0.98106 1.20798 0.95924 1.02506 0.96377 1.20771 0.99438 1.01193 0.92716 0.92476 0.83875 0.82001 0.88611 0.92228 0.88106 0.92273 0.87848 0.91863 0.93125 0.87069 0.83520 0.87594 0.87790 0.87479 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.92 9.55 55.43 0.53 -21.39 16 2 C 0.08 2.12 5.22 -17.82 -0.09 2.03 16 3 Si 0.89 20.39 29.55 -169.99 -5.02 15.36 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -13.82 8.85 -34.44 -0.30 -14.12 16 8 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 9 C 0.24 5.80 2.34 -29.04 -0.07 5.73 16 10 H 0.06 1.35 6.96 -51.93 -0.36 0.99 16 11 O -0.26 -6.30 7.61 -18.23 -0.14 -6.44 16 12 C 0.42 9.09 7.49 -16.72 -0.13 8.97 16 13 C -0.29 -5.21 10.12 -39.15 -0.40 -5.61 16 14 C 0.18 2.85 11.29 -17.29 -0.20 2.66 16 15 N -0.60 -10.35 8.69 -14.00 -0.12 -10.47 16 16 C 0.52 9.78 7.17 -322.87 -2.32 7.46 16 17 N -0.46 -7.50 4.79 -175.09 -0.84 -8.34 16 18 C 0.04 0.49 4.80 -3.71 -0.02 0.48 16 19 C 0.06 0.68 7.01 37.21 0.26 0.94 16 20 O -0.39 -5.02 10.83 -35.23 -0.38 -5.40 16 21 C 0.07 0.80 7.01 37.21 0.26 1.06 16 22 C 0.03 0.47 5.49 -3.71 -0.02 0.45 16 23 N -0.57 -12.18 8.11 -13.99 -0.11 -12.30 16 24 C -0.04 -0.89 4.82 -104.62 -0.50 -1.39 16 25 C -0.07 -1.60 8.08 -39.59 -0.32 -1.92 16 26 C -0.14 -2.75 10.05 -39.58 -0.40 -3.15 16 27 C -0.15 -2.64 10.05 -39.58 -0.40 -3.04 16 28 C -0.14 -2.52 10.05 -39.59 -0.40 -2.92 16 29 C -0.12 -2.52 9.70 -39.58 -0.38 -2.91 16 30 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.14 2.36 8.06 -52.48 -0.42 1.94 16 32 H 0.16 1.86 8.06 -52.48 -0.42 1.44 16 33 H 0.10 1.24 7.83 -51.93 -0.41 0.83 16 34 H 0.06 0.84 8.01 -51.93 -0.42 0.43 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.11 1.90 7.68 -51.93 -0.40 1.50 16 41 H 0.15 3.55 5.99 -52.49 -0.31 3.23 16 42 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 44 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.11 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -29.02 371.64 -12.00 -41.02 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.09 Total: 7.63 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -5.42 Total: -5.28 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.54 Total: -52.49 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.52 Total: -11.84 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.02 -12.00 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226753321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.174 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds