Wall clock time and date at job start Sat Apr 11 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99809 * 2 1 4 4 H 1.48504 * 109.47058 * 270.00126 * 3 2 1 5 5 H 1.48499 * 109.47613 * 30.00295 * 3 2 1 6 6 H 1.48501 * 109.46915 * 150.00417 * 3 2 1 7 7 C 1.37877 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99672 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00150 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.46998 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99865 * 70.00202 * 10 9 7 12 12 C 1.50706 * 109.47320 * 293.95167 * 11 10 9 13 13 C 1.38675 * 120.41529 * 89.99996 * 12 11 10 14 14 C 1.38631 * 118.41792 * 179.97438 * 13 12 11 15 15 C 1.38221 * 119.16077 * 0.25627 * 14 13 12 16 16 N 1.31860 * 120.76509 * 359.49797 * 15 14 13 17 17 C 1.31882 * 121.72556 * 0.49011 * 16 15 14 18 18 C 1.46904 * 111.00100 * 193.95424 * 10 9 7 19 19 C 1.50697 * 109.46887 * 66.04669 * 18 10 9 20 20 C 1.38050 * 119.49749 * 94.72588 * 19 18 10 21 21 C 1.38794 * 119.20680 * 179.83394 * 20 19 18 22 22 C 1.38792 * 118.42318 * 0.47884 * 21 20 19 23 23 C 1.39152 * 119.28268 * 359.63331 * 22 21 20 24 24 N 1.31906 * 119.49964 * 275.00141 * 19 18 10 25 25 O 1.35989 * 120.49523 * 180.45811 * 23 22 21 26 26 C 1.43136 * 116.74944 * 342.40504 * 25 23 22 27 27 C 1.53475 * 108.33578 * 46.48149 * 26 25 23 28 28 O 1.35954 * 119.64619 * 179.47107 * 22 21 20 29 29 H 0.97008 * 120.00274 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47259 * 60.00511 * 9 7 2 31 31 H 1.09001 * 109.47368 * 300.00155 * 9 7 2 32 32 H 1.09008 * 109.47342 * 173.95281 * 11 10 9 33 33 H 1.08998 * 109.47612 * 53.95209 * 11 10 9 34 34 H 1.07998 * 120.79161 * 359.96013 * 13 12 11 35 35 H 1.08002 * 120.41548 * 179.97438 * 14 13 12 36 36 H 1.08002 * 119.62066 * 179.74470 * 15 14 13 37 37 H 1.07993 * 119.62126 * 179.75488 * 17 16 15 38 38 H 1.09002 * 109.46980 * 186.04772 * 18 10 9 39 39 H 1.08997 * 109.46914 * 306.04430 * 18 10 9 40 40 H 1.08002 * 120.39904 * 0.06184 * 20 19 18 41 41 H 1.07995 * 120.78446 * 180.22336 * 21 20 19 42 42 H 1.09002 * 109.69240 * 286.77537 * 26 25 23 43 43 H 1.09000 * 109.72918 * 166.21098 * 26 25 23 44 44 H 1.08995 * 109.72182 * 180.63029 * 27 26 25 45 45 H 1.09002 * 109.71467 * 59.96823 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 2.9042 -3.7110 1.2882 12 6 3.7743 -2.4955 1.4791 13 6 3.2717 -1.3631 2.1021 14 6 4.1085 -0.2687 2.2565 15 6 5.4051 -0.3401 1.7830 16 7 5.8507 -1.4354 1.1995 17 6 5.0832 -2.4954 1.0360 18 6 1.5361 -4.8808 -0.3313 19 6 1.0427 -4.8309 -1.7543 20 6 1.8261 -5.3530 -2.7640 21 6 1.3643 -5.3070 -4.0721 22 6 0.1284 -4.7245 -4.3162 23 6 -0.6069 -4.2159 -3.2499 24 7 -0.1286 -4.2841 -2.0169 25 8 -1.8247 -3.6484 -3.4598 26 6 -2.1285 -3.2526 -4.8014 27 6 -1.7444 -4.4025 -5.7426 28 8 -0.3432 -4.6565 -5.5895 29 1 -0.4851 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8897 32 1 3.5245 -4.6073 1.2999 33 1 2.1730 -3.7647 2.0948 34 1 2.2525 -1.3344 2.4583 35 1 3.7503 0.6300 2.7367 36 1 6.0621 0.5096 1.8956 37 1 5.4821 -3.3734 0.5499 38 1 2.2408 -5.7048 -0.2196 39 1 0.6915 -5.0314 0.3411 40 1 2.7852 -5.7953 -2.5384 41 1 1.9545 -5.7111 -4.8812 42 1 -1.5576 -2.3606 -5.0594 43 1 -3.1947 -3.0450 -4.8913 44 1 -1.9565 -4.1201 -6.7738 45 1 -2.3109 -5.2963 -5.4814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233839595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:26 Heat of formation + Delta-G solvation = 36.483042 kcal Electronic energy + Delta-G solvation = -30164.079386 eV Core-core repulsion = 26148.749065 eV Total energy + Delta-G solvation = -4015.330321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30151 -39.56977 -38.78098 -37.20642 -36.44826 -32.85452 -32.26244 -31.82922 -31.23180 -30.63200 -29.04173 -27.47557 -26.12454 -24.89978 -23.98190 -22.60694 -22.58696 -21.94824 -20.88635 -19.95027 -18.50854 -17.75928 -17.28750 -16.57861 -16.24327 -15.69747 -15.47862 -15.31189 -14.95166 -14.72409 -14.61891 -14.34875 -14.29637 -14.04329 -13.53444 -13.40115 -13.07983 -12.95852 -12.66273 -12.21142 -12.12087 -12.00708 -11.72034 -11.59512 -11.44427 -11.31815 -11.06285 -11.01302 -10.64082 -10.57453 -10.51026 -9.98020 -9.41883 -9.16090 -9.00848 -8.61531 -8.55821 -8.32123 -7.98942 -7.77285 -7.35676 -6.06002 -3.96853 1.30398 1.46849 2.00063 2.30077 2.84907 3.09560 3.29372 3.37696 3.44269 3.94428 4.12188 4.40990 4.54776 4.62285 4.70663 4.81436 4.88826 5.02088 5.18048 5.22988 5.26397 5.32606 5.38922 5.46103 5.54815 5.59739 5.69138 5.81319 5.82660 5.92356 5.97333 6.10442 6.13035 6.22087 6.33663 6.51515 6.57771 6.61749 6.76606 7.08434 7.21897 7.25785 7.33753 7.40112 7.61357 7.78643 8.10959 8.13442 8.34748 8.49056 8.83059 9.03090 9.55084 11.02028 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013292 B = 0.003902 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.102065 B = 7173.744757 C = 8358.831647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.059 3.941 3 Si 0.868 3.132 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.245 1.245 7 C -0.493 4.493 8 H 0.077 0.923 9 C 0.182 3.818 10 N -0.529 5.529 11 C 0.112 3.888 12 C -0.115 4.115 13 C 0.017 3.983 14 C -0.201 4.201 15 C 0.092 3.908 16 N -0.514 5.514 17 C 0.097 3.903 18 C 0.105 3.895 19 C 0.163 3.837 20 C -0.153 4.153 21 C -0.076 4.076 22 C -0.005 4.005 23 C 0.268 3.732 24 N -0.446 5.446 25 O -0.292 6.292 26 C 0.026 3.974 27 C 0.020 3.980 28 O -0.307 6.307 29 H 0.260 0.740 30 H 0.055 0.945 31 H -0.008 1.008 32 H 0.067 0.933 33 H 0.034 0.966 34 H 0.128 0.872 35 H 0.116 0.884 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.494 -10.492 -5.724 11.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.144 4.144 3 Si 0.695 3.305 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.169 1.169 7 C -0.531 4.531 8 H 0.095 0.905 9 C 0.057 3.943 10 N -0.254 5.254 11 C -0.016 4.016 12 C -0.117 4.117 13 C -0.009 4.009 14 C -0.221 4.221 15 C -0.066 4.066 16 N -0.224 5.224 17 C -0.058 4.058 18 C -0.024 4.024 19 C 0.025 3.975 20 C -0.173 4.173 21 C -0.102 4.102 22 C -0.052 4.052 23 C 0.087 3.913 24 N -0.166 5.166 25 O -0.202 6.202 26 C -0.051 4.051 27 C -0.055 4.055 28 O -0.221 6.221 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.009 0.991 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.146 0.854 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.099 0.901 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.044 -9.960 -5.798 11.525 hybrid contribution -1.103 1.022 -0.291 1.532 sum -1.147 -8.938 -6.089 10.876 Atomic orbital electron populations 1.70013 1.06037 1.26671 1.49277 1.24963 0.94644 0.99083 0.95693 0.86978 0.81410 0.83544 0.78549 1.21151 1.21528 1.16928 1.21661 0.94286 0.89847 1.47309 0.90467 1.20013 0.89889 0.86681 0.97748 1.62290 1.31063 1.02867 1.29159 1.20726 0.95370 0.94645 0.90848 1.20311 0.95076 0.96915 0.99436 1.21169 0.97572 0.91183 0.91013 1.21741 0.95600 0.99362 1.05413 1.22318 0.93949 0.95370 0.94989 1.67539 1.38348 1.00516 1.15957 1.22212 0.90569 0.96146 0.96886 1.20890 0.97330 0.94281 0.89888 1.20779 0.87763 0.92289 0.96660 1.21688 1.01119 1.02977 0.91543 1.20797 0.93607 0.98150 0.97641 1.19625 0.97239 1.04022 0.84355 1.19344 0.87200 0.95255 0.89465 1.66712 1.14966 1.15471 1.19471 1.86236 1.29365 1.75282 1.29268 1.23690 1.03824 0.97213 0.80323 1.23644 0.80914 0.98851 1.02121 1.86249 1.24605 1.88166 1.23058 0.93001 0.92736 0.99051 0.91472 0.94771 0.85384 0.86599 0.84703 0.84291 0.89908 0.93575 0.83837 0.84012 0.90118 0.85701 0.86037 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.78 13.29 55.43 0.74 -25.04 16 2 C 0.06 1.63 5.44 -17.82 -0.10 1.53 16 3 Si 0.87 21.03 28.48 -169.99 -4.84 16.19 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.25 -5.53 4.98 56.52 0.28 -5.25 16 7 C -0.49 -13.03 5.38 -34.44 -0.19 -13.21 16 8 H 0.08 2.06 4.70 -52.49 -0.25 1.81 16 9 C 0.18 4.56 4.52 -4.98 -0.02 4.54 16 10 N -0.53 -10.65 4.55 -238.96 -1.09 -11.74 16 11 C 0.11 1.98 5.14 -4.98 -0.03 1.96 16 12 C -0.11 -2.21 3.47 -104.48 -0.36 -2.57 16 13 C 0.02 0.35 6.04 -39.28 -0.24 0.11 16 14 C -0.20 -3.88 7.14 -39.44 -0.28 -4.16 16 15 C 0.09 1.73 11.11 -17.55 -0.19 1.54 16 16 N -0.51 -10.16 10.36 -13.25 -0.14 -10.30 16 17 C 0.10 1.82 10.66 -17.55 -0.19 1.63 16 18 C 0.10 1.78 5.27 -4.98 -0.03 1.75 16 19 C 0.16 2.95 5.74 -82.63 -0.47 2.47 16 20 C -0.15 -2.28 9.71 -39.44 -0.38 -2.66 16 21 C -0.08 -1.10 10.10 -39.17 -0.40 -1.49 16 22 C 0.00 -0.08 6.50 -39.04 -0.25 -0.33 16 23 C 0.27 5.07 7.55 -16.95 -0.13 4.94 16 24 N -0.45 -9.27 8.54 -9.39 -0.08 -9.35 16 25 O -0.29 -5.23 10.51 -32.46 -0.34 -5.58 16 26 C 0.03 0.31 7.25 37.40 0.27 0.58 16 27 C 0.02 0.21 7.27 37.40 0.27 0.48 16 28 O -0.31 -4.30 10.43 -32.35 -0.34 -4.64 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.05 1.53 5.66 -51.93 -0.29 1.24 16 31 H -0.01 -0.23 7.98 -51.93 -0.41 -0.64 16 32 H 0.07 0.96 7.88 -51.92 -0.41 0.55 16 33 H 0.03 0.60 7.97 -51.93 -0.41 0.19 16 34 H 0.13 2.73 7.69 -52.49 -0.40 2.33 16 35 H 0.12 2.08 7.87 -52.49 -0.41 1.67 16 36 H 0.14 2.20 8.06 -52.49 -0.42 1.77 16 37 H 0.14 2.29 8.06 -52.49 -0.42 1.86 16 38 H 0.08 1.09 7.83 -51.93 -0.41 0.68 16 39 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 40 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 362.45 15.07 5.46 5.46 Total: -1.00 -34.00 362.45 -9.40 -43.40 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.06 Total: 4.49 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.71 Total: -2.89 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.57 Total: -56.43 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.68 Total: -10.22 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.84 Total: 16.19 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.00 -9.40 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233839595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.883 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds