Wall clock time and date at job start Sat Apr 11 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99809 * 2 1 4 4 H 1.48504 * 109.47058 * 270.00126 * 3 2 1 5 5 H 1.48499 * 109.47613 * 30.00295 * 3 2 1 6 6 H 1.48501 * 109.46915 * 150.00417 * 3 2 1 7 7 C 1.37877 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99672 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00150 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.46998 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99865 * 70.00202 * 10 9 7 12 12 C 1.50706 * 109.47320 * 293.95167 * 11 10 9 13 13 C 1.38675 * 120.41529 * 89.99996 * 12 11 10 14 14 C 1.38631 * 118.41792 * 179.97438 * 13 12 11 15 15 C 1.38221 * 119.16077 * 0.25627 * 14 13 12 16 16 N 1.31860 * 120.76509 * 359.49797 * 15 14 13 17 17 C 1.31882 * 121.72556 * 0.49011 * 16 15 14 18 18 C 1.46904 * 111.00100 * 193.95424 * 10 9 7 19 19 C 1.50697 * 109.46887 * 66.04669 * 18 10 9 20 20 C 1.38050 * 119.49749 * 94.72588 * 19 18 10 21 21 C 1.38794 * 119.20680 * 179.83394 * 20 19 18 22 22 C 1.38792 * 118.42318 * 0.47884 * 21 20 19 23 23 C 1.39152 * 119.28268 * 359.63331 * 22 21 20 24 24 N 1.31906 * 119.49964 * 275.00141 * 19 18 10 25 25 O 1.35989 * 120.49523 * 180.45811 * 23 22 21 26 26 C 1.43136 * 116.74944 * 342.40504 * 25 23 22 27 27 C 1.53475 * 108.33578 * 46.48149 * 26 25 23 28 28 O 1.35954 * 119.64619 * 179.47107 * 22 21 20 29 29 H 0.97008 * 120.00274 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47259 * 60.00511 * 9 7 2 31 31 H 1.09001 * 109.47368 * 300.00155 * 9 7 2 32 32 H 1.09008 * 109.47342 * 173.95281 * 11 10 9 33 33 H 1.08998 * 109.47612 * 53.95209 * 11 10 9 34 34 H 1.07998 * 120.79161 * 359.96013 * 13 12 11 35 35 H 1.08002 * 120.41548 * 179.97438 * 14 13 12 36 36 H 1.08002 * 119.62066 * 179.74470 * 15 14 13 37 37 H 1.07993 * 119.62126 * 179.75488 * 17 16 15 38 38 H 1.09002 * 109.46980 * 186.04772 * 18 10 9 39 39 H 1.08997 * 109.46914 * 306.04430 * 18 10 9 40 40 H 1.08002 * 120.39904 * 0.06184 * 20 19 18 41 41 H 1.07995 * 120.78446 * 180.22336 * 21 20 19 42 42 H 1.09002 * 109.69240 * 286.77537 * 26 25 23 43 43 H 1.09000 * 109.72918 * 166.21098 * 26 25 23 44 44 H 1.08995 * 109.72182 * 180.63029 * 27 26 25 45 45 H 1.09002 * 109.71467 * 59.96823 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 2.9042 -3.7110 1.2882 12 6 3.7743 -2.4955 1.4791 13 6 3.2717 -1.3631 2.1021 14 6 4.1085 -0.2687 2.2565 15 6 5.4051 -0.3401 1.7830 16 7 5.8507 -1.4354 1.1995 17 6 5.0832 -2.4954 1.0360 18 6 1.5361 -4.8808 -0.3313 19 6 1.0427 -4.8309 -1.7543 20 6 1.8261 -5.3530 -2.7640 21 6 1.3643 -5.3070 -4.0721 22 6 0.1284 -4.7245 -4.3162 23 6 -0.6069 -4.2159 -3.2499 24 7 -0.1286 -4.2841 -2.0169 25 8 -1.8247 -3.6484 -3.4598 26 6 -2.1285 -3.2526 -4.8014 27 6 -1.7444 -4.4025 -5.7426 28 8 -0.3432 -4.6565 -5.5895 29 1 -0.4851 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8897 32 1 3.5245 -4.6073 1.2999 33 1 2.1730 -3.7647 2.0948 34 1 2.2525 -1.3344 2.4583 35 1 3.7503 0.6300 2.7367 36 1 6.0621 0.5096 1.8956 37 1 5.4821 -3.3734 0.5499 38 1 2.2408 -5.7048 -0.2196 39 1 0.6915 -5.0314 0.3411 40 1 2.7852 -5.7953 -2.5384 41 1 1.9545 -5.7111 -4.8812 42 1 -1.5576 -2.3606 -5.0594 43 1 -3.1947 -3.0450 -4.8913 44 1 -1.9565 -4.1201 -6.7738 45 1 -2.3109 -5.2963 -5.4814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233839595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:25 Heat of formation + Delta-G solvation = 10.706583 kcal Electronic energy + Delta-G solvation = -30165.197137 eV Core-core repulsion = 26148.749065 eV Total energy + Delta-G solvation = -4016.448072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.45013 -41.08529 -40.00957 -38.34627 -37.97575 -34.77018 -33.70667 -33.09912 -32.60619 -31.97682 -30.32868 -29.28398 -27.43303 -26.01582 -25.64434 -24.14923 -24.08594 -23.29814 -22.13738 -21.49131 -19.64674 -18.97477 -18.57481 -18.35522 -17.73287 -17.14632 -16.78649 -16.76260 -16.40456 -16.09857 -15.98152 -15.68450 -15.42982 -15.33017 -15.11730 -14.57529 -14.55068 -14.36607 -13.96897 -13.87502 -13.75313 -13.60252 -13.18618 -13.08577 -12.86447 -12.58016 -12.46690 -12.37851 -12.30589 -12.14122 -12.06917 -11.69753 -11.28429 -10.63846 -10.38410 -10.28288 -10.13316 -9.96902 -9.42856 -9.18844 -8.98572 -8.15164 -6.12020 0.06820 0.27276 0.50896 0.74338 1.33606 1.39203 1.49650 1.75208 2.10428 2.39767 2.67727 3.10770 3.12626 3.24168 3.51714 3.59527 3.74474 3.82735 3.86133 3.94282 4.06251 4.14095 4.23523 4.24441 4.37066 4.41591 4.47374 4.51672 4.55317 4.60159 4.67725 4.71322 4.80019 4.91507 5.02991 5.11181 5.14555 5.29498 5.45403 5.46582 5.54952 5.65807 5.69675 5.77253 6.10165 6.14277 6.18944 6.38284 6.63350 6.95601 7.10715 7.32240 7.45536 8.94106 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013292 B = 0.003902 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.102065 B = 7173.744757 C = 8358.831647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.918 3.082 4 H -0.298 1.298 5 H -0.291 1.291 6 H -0.217 1.217 7 C -0.484 4.484 8 H 0.079 0.921 9 C 0.202 3.798 10 N -0.529 5.529 11 C 0.111 3.889 12 C -0.121 4.121 13 C -0.001 4.001 14 C -0.204 4.204 15 C 0.086 3.914 16 N -0.521 5.521 17 C 0.098 3.902 18 C 0.106 3.894 19 C 0.133 3.867 20 C -0.139 4.139 21 C -0.074 4.074 22 C -0.004 4.004 23 C 0.234 3.766 24 N -0.498 5.498 25 O -0.329 6.329 26 C 0.015 3.985 27 C 0.021 3.979 28 O -0.312 6.312 29 H 0.256 0.744 30 H 0.022 0.978 31 H -0.048 1.048 32 H 0.114 0.886 33 H 0.026 0.974 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.133 0.867 39 H 0.028 0.972 40 H 0.184 0.816 41 H 0.179 0.821 42 H 0.068 0.932 43 H 0.158 0.842 44 H 0.165 0.835 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 -11.984 -7.113 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.189 4.189 3 Si 0.744 3.256 4 H -0.225 1.225 5 H -0.217 1.217 6 H -0.139 1.139 7 C -0.522 4.522 8 H 0.097 0.903 9 C 0.075 3.925 10 N -0.253 5.253 11 C -0.017 4.017 12 C -0.123 4.123 13 C -0.027 4.027 14 C -0.224 4.224 15 C -0.072 4.072 16 N -0.231 5.231 17 C -0.057 4.057 18 C -0.022 4.022 19 C -0.005 4.005 20 C -0.159 4.159 21 C -0.100 4.100 22 C -0.052 4.052 23 C 0.055 3.945 24 N -0.219 5.219 25 O -0.240 6.240 26 C -0.060 4.060 27 C -0.053 4.053 28 O -0.226 6.226 29 H 0.065 0.935 30 H 0.040 0.960 31 H -0.030 1.030 32 H 0.132 0.868 33 H 0.045 0.955 34 H 0.122 0.878 35 H 0.145 0.855 36 H 0.182 0.818 37 H 0.186 0.814 38 H 0.151 0.849 39 H 0.047 0.953 40 H 0.201 0.799 41 H 0.197 0.803 42 H 0.086 0.914 43 H 0.176 0.824 44 H 0.182 0.818 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.996 -11.467 -7.181 13.857 hybrid contribution -2.019 1.404 0.136 2.463 sum 0.977 -10.062 -7.045 12.322 Atomic orbital electron populations 1.70160 1.07713 1.26910 1.52177 1.25656 0.95112 1.02188 0.95946 0.86202 0.81557 0.80012 0.77833 1.22495 1.21744 1.13930 1.21808 0.94147 0.90311 1.45977 0.90285 1.19552 0.89899 0.88649 0.94353 1.62186 1.29726 1.02954 1.30456 1.20881 0.95380 0.96001 0.89444 1.20520 0.95723 0.97010 0.99080 1.21172 0.96989 0.92535 0.92034 1.21959 0.95899 0.99419 1.05145 1.22786 0.94003 0.96111 0.94271 1.67625 1.38632 1.00930 1.15881 1.22668 0.90061 0.96854 0.96113 1.21078 0.97786 0.93961 0.89400 1.21100 0.87896 0.93612 0.97853 1.22076 1.01737 1.01261 0.90858 1.21297 0.92986 0.97112 0.98619 1.19787 0.97601 1.03304 0.84493 1.19618 0.88089 0.96852 0.89978 1.66576 1.16936 1.17090 1.21324 1.86162 1.29579 1.75655 1.32602 1.24077 1.05669 0.97567 0.78683 1.23987 0.79074 0.98443 1.03811 1.86229 1.26771 1.87903 1.21650 0.93536 0.95976 1.02998 0.86813 0.95543 0.87750 0.85493 0.81845 0.81376 0.84899 0.95342 0.79920 0.80327 0.91380 0.82435 0.81782 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 2 C 0.01 0.52 5.44 84.65 0.46 0.98 16 3 Si 0.92 43.89 28.48 68.60 1.95 45.84 16 4 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.22 -9.20 4.98 99.48 0.50 -8.70 16 7 C -0.48 -26.20 5.38 25.60 0.14 -26.07 16 8 H 0.08 4.19 4.70 -2.91 -0.01 4.18 16 9 C 0.20 10.60 4.52 85.55 0.39 10.99 16 10 N -0.53 -21.03 4.55 -909.93 -4.14 -25.18 16 11 C 0.11 3.72 5.14 85.56 0.44 4.16 16 12 C -0.12 -4.45 3.47 -19.77 -0.07 -4.52 16 13 C 0.00 -0.03 6.04 22.47 0.14 0.11 16 14 C -0.20 -7.55 7.14 22.36 0.16 -7.39 16 15 C 0.09 2.99 11.11 84.68 0.94 3.93 16 16 N -0.52 -18.90 10.36 -195.85 -2.03 -20.93 16 17 C 0.10 3.37 10.66 84.67 0.90 4.28 16 18 C 0.11 3.51 5.27 85.56 0.45 3.96 16 19 C 0.13 4.79 5.74 42.50 0.24 5.04 16 20 C -0.14 -3.81 9.71 22.36 0.22 -3.59 16 21 C -0.07 -1.98 10.10 22.54 0.23 -1.75 16 22 C 0.00 -0.12 6.50 22.62 0.15 0.02 16 23 C 0.23 9.27 7.55 84.82 0.64 9.91 16 24 N -0.50 -21.81 8.54 -296.22 -2.53 -24.34 16 25 O -0.33 -12.55 10.51 -81.22 -0.85 -13.41 16 26 C 0.02 0.37 7.25 72.14 0.52 0.89 16 27 C 0.02 0.40 7.27 72.14 0.52 0.92 16 28 O -0.31 -8.27 10.43 -80.83 -0.84 -9.11 16 29 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 30 H 0.02 1.32 5.66 -2.39 -0.01 1.31 16 31 H -0.05 -2.81 7.98 -2.39 -0.02 -2.83 16 32 H 0.11 2.78 7.88 -2.38 -0.02 2.76 16 33 H 0.03 0.94 7.97 -2.39 -0.02 0.92 16 34 H 0.10 4.66 7.69 -2.91 -0.02 4.64 16 35 H 0.13 4.34 7.87 -2.91 -0.02 4.32 16 36 H 0.16 4.69 8.06 -2.91 -0.02 4.66 16 37 H 0.17 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.13 2.99 7.83 -2.39 -0.02 2.97 16 39 H 0.03 1.04 8.12 -2.39 -0.02 1.02 16 40 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 41 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.16 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -80.28 362.45 -0.89 -81.18 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.80 Total: 21.16 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 6.47 Total: 1.87 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -8.42 Total: -127.53 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -1.70 Total: -22.51 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.95 Total: 45.84 kcal Total: -80.28 -0.89 -81.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233839595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.883 kcal (2) G-P(sol) polarization free energy of solvation -80.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds