Wall clock time and date at job start Sat Apr 11 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86796 * 120.00434 * 2 1 4 4 H 1.48501 * 109.47648 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47020 * 300.00364 * 3 2 1 6 6 H 1.48503 * 109.46772 * 59.99919 * 3 2 1 7 7 C 1.38656 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00304 * 179.97438 * 7 2 1 9 9 O 1.34816 * 120.00267 * 0.02562 * 7 2 1 10 10 C 1.35708 * 117.00194 * 185.06881 * 9 7 2 11 11 C 1.39424 * 120.39069 * 354.76812 * 10 9 7 12 12 C 1.38224 * 118.45597 * 180.26052 * 11 10 9 13 13 C 1.39427 * 119.14526 * 359.75134 * 12 11 10 14 14 C 1.48293 * 119.64613 * 179.97438 * 13 12 11 15 15 C 1.39821 * 120.53539 * 180.02562 * 14 13 12 16 16 C 1.38404 * 118.30753 * 180.02562 * 15 14 13 17 17 C 1.38325 * 119.28211 * 359.97438 * 16 15 14 18 18 C 1.50707 * 119.47756 * 179.97438 * 17 16 15 19 19 N 1.46898 * 109.46696 * 95.00318 * 18 17 16 20 20 C 1.47014 * 111.00119 * 293.63364 * 19 18 17 21 21 C 1.53100 * 109.25817 * 177.61147 * 20 19 18 22 22 O 1.43017 * 109.25803 * 56.84752 * 21 20 19 23 23 C 1.43008 * 113.73981 * 301.33179 * 22 21 20 24 24 C 1.47013 * 111.00009 * 170.00128 * 19 18 17 25 25 N 1.31901 * 121.04657 * 0.02562 * 17 16 15 26 26 C 1.31736 * 121.85343 * 359.69601 * 25 17 16 27 27 N 1.32685 * 120.69862 * 0.02562 * 13 12 11 28 28 C 1.31657 * 121.68705 * 359.97438 * 27 13 12 29 29 H 0.96996 * 119.99617 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.77129 * 0.02562 * 11 10 9 31 31 H 1.08001 * 120.42351 * 179.72881 * 12 11 10 32 32 H 1.08001 * 120.85256 * 359.97438 * 15 14 13 33 33 H 1.07990 * 120.36154 * 180.02562 * 16 15 14 34 34 H 1.09002 * 109.46943 * 214.99777 * 18 17 16 35 35 H 1.08994 * 109.47326 * 335.00438 * 18 17 16 36 36 H 1.08997 * 109.50615 * 297.54254 * 20 19 18 37 37 H 1.08993 * 109.50533 * 57.67309 * 20 19 18 38 38 H 1.08996 * 109.50534 * 296.91411 * 21 20 19 39 39 H 1.09001 * 109.50896 * 176.78244 * 21 20 19 40 40 H 1.09005 * 109.50667 * 298.73070 * 23 22 21 41 41 H 1.09001 * 109.54103 * 178.63246 * 23 22 21 42 42 H 1.09005 * 109.50693 * 302.32432 * 24 19 18 43 43 H 1.09004 * 109.51046 * 62.45125 * 24 19 18 44 44 H 1.08000 * 119.70911 * 180.29069 * 26 25 17 45 45 H 1.08000 * 119.60916 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8909 2.3963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3684 -0.0016 10 6 2.0697 -3.5042 0.1048 11 6 3.4627 -3.4460 0.0997 12 6 4.1717 -4.6279 0.2048 13 6 3.4746 -5.8302 0.3169 14 6 4.2240 -7.1049 0.4297 15 6 3.5439 -8.3213 0.5426 16 6 4.2892 -9.4829 0.6457 17 6 5.6702 -9.4040 0.6334 18 6 6.4861 -10.6661 0.7461 19 7 6.8477 -11.1368 -0.5977 20 6 5.6558 -11.5642 -1.3446 21 6 6.0699 -11.9896 -2.7558 22 8 7.0533 -13.0243 -2.6671 23 6 8.2279 -12.6420 -1.9465 24 6 7.8356 -12.2232 -0.5272 25 7 6.2842 -8.2416 0.5257 26 6 5.6175 -7.1104 0.4197 27 7 2.1479 -5.8460 0.3227 28 6 1.4426 -4.7386 0.2244 29 1 -0.4849 0.8400 -0.0004 30 1 3.9759 -2.4998 0.0118 31 1 5.2516 -4.6202 0.1997 32 1 2.4644 -8.3536 0.5499 33 1 3.7980 -10.4406 0.7339 34 1 7.3927 -10.4629 1.3160 35 1 5.9014 -11.4326 1.2544 36 1 5.1882 -12.4057 -0.8334 37 1 4.9490 -10.7369 -1.4066 38 1 6.4887 -11.1341 -3.2857 39 1 5.1983 -12.3612 -3.2946 40 1 8.7094 -11.8055 -2.4529 41 1 8.9175 -13.4849 -1.8999 42 1 8.7200 -11.8769 0.0076 43 1 7.4029 -13.0753 -0.0028 44 1 6.1557 -6.1785 0.3286 45 1 0.3639 -4.7905 0.2322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239582637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:29 Heat of formation + Delta-G solvation = 8.427629 kcal Electronic energy + Delta-G solvation = -27850.870669 eV Core-core repulsion = 23834.323774 eV Total energy + Delta-G solvation = -4016.546895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.52142 -39.78891 -39.26237 -37.36430 -36.10436 -33.02089 -32.43117 -32.25106 -31.52223 -31.22976 -29.59417 -27.74796 -25.87714 -24.77699 -24.42885 -23.89708 -22.64061 -22.06015 -21.02817 -20.64615 -18.30492 -17.57162 -16.98259 -16.69473 -16.47187 -16.33260 -15.89820 -15.42157 -15.31872 -14.94885 -14.80765 -14.61690 -14.46092 -14.20826 -14.03636 -13.70815 -13.44472 -13.15844 -12.88670 -12.79211 -12.53876 -12.37557 -12.25164 -12.00647 -11.92182 -11.72603 -11.48714 -11.29814 -11.23142 -10.89374 -10.62937 -10.03178 -9.95106 -9.76013 -9.36958 -9.31585 -9.18504 -8.93233 -8.85077 -8.66232 -7.33252 -6.73830 -4.29175 0.82164 1.40111 1.92395 2.23108 2.98174 2.99411 3.05398 3.38533 3.57092 3.74118 3.99328 4.16468 4.53521 4.56341 4.61283 4.63900 4.70381 4.81434 4.83269 4.86717 4.94122 5.00597 5.04030 5.11373 5.22416 5.24059 5.30572 5.32955 5.36624 5.44794 5.54144 5.58320 5.64455 5.68891 5.79909 5.85614 5.94339 6.20961 6.36748 6.49316 6.58078 6.62042 6.66850 6.81028 6.82639 6.87617 7.06326 7.30902 7.68634 8.09965 8.59042 8.70375 9.33168 10.42063 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026813 B = 0.001809 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.026938 B =15477.245592 C =15656.368961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.043 3.957 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.393 4.393 8 H 0.097 0.903 9 O -0.155 6.155 10 C 0.109 3.891 11 C -0.203 4.203 12 C -0.095 4.095 13 C 0.034 3.966 14 C -0.046 4.046 15 C -0.060 4.060 16 C -0.166 4.166 17 C 0.110 3.890 18 C 0.111 3.889 19 N -0.528 5.528 20 C 0.014 3.986 21 C 0.064 3.936 22 O -0.388 6.388 23 C 0.064 3.936 24 C 0.019 3.981 25 N -0.461 5.461 26 C 0.096 3.904 27 N -0.431 5.431 28 C 0.036 3.964 29 H 0.275 0.725 30 H 0.140 0.860 31 H 0.123 0.877 32 H 0.143 0.857 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.043 0.957 44 H 0.156 0.844 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.541 -19.820 -0.493 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.469 4.469 8 H 0.114 0.886 9 O -0.055 6.055 10 C 0.050 3.950 11 C -0.228 4.228 12 C -0.115 4.115 13 C -0.100 4.100 14 C -0.049 4.049 15 C -0.087 4.087 16 C -0.186 4.186 17 C -0.028 4.028 18 C -0.017 4.017 19 N -0.253 5.253 20 C -0.114 4.114 21 C -0.013 4.013 22 O -0.306 6.306 23 C -0.013 4.013 24 C -0.109 4.109 25 N -0.170 5.170 26 C -0.063 4.063 27 N -0.140 5.140 28 C -0.129 4.129 29 H 0.085 0.915 30 H 0.157 0.843 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.145 0.855 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.061 0.939 44 H 0.173 0.827 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 12.785 -20.139 -0.780 23.867 hybrid contribution -0.459 1.426 0.534 1.591 sum 12.325 -18.712 -0.246 22.408 Atomic orbital electron populations 1.70035 1.06130 1.28360 1.43426 1.25410 0.95953 0.99204 0.95859 0.85562 0.79206 0.79661 0.78568 1.18830 1.19815 1.19816 1.21505 0.92107 0.80491 1.52796 0.88567 1.83952 1.34488 1.11531 1.75489 1.20549 0.91036 0.89355 0.94014 1.21466 0.93853 0.99031 1.08479 1.21681 0.99875 0.92114 0.97822 1.18847 0.89419 0.91024 1.10723 1.19533 0.93711 0.92679 0.98932 1.21661 1.01224 0.90829 0.94949 1.21860 0.94471 0.99167 1.03097 1.20800 0.90791 0.93150 0.98085 1.20867 0.99254 0.91906 0.89634 1.62117 1.12086 1.35047 1.16061 1.22874 0.93007 1.00159 0.95363 1.22670 0.92052 0.91148 0.95418 1.87973 1.28467 1.38837 1.75327 1.22658 0.87569 1.00604 0.90505 1.22792 0.96801 0.92880 0.98430 1.67372 1.40691 0.97819 1.11091 1.22791 0.90447 0.96221 0.96813 1.67277 1.07123 1.29985 1.09641 1.21742 0.99698 0.85230 1.06203 0.91478 0.84281 0.85928 0.83953 0.85504 0.88959 0.93235 0.93859 0.89221 0.92147 0.88380 0.92135 0.88457 0.89364 0.93920 0.82682 0.82860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.14 13.67 55.48 0.76 -22.38 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.95 19.02 29.55 -169.99 -5.02 13.99 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.39 -10.14 9.50 30.89 0.29 -9.84 16 8 H 0.10 2.27 5.25 -52.48 -0.28 2.00 16 9 O -0.16 -4.08 9.76 0.22 0.00 -4.08 16 10 C 0.11 2.45 6.67 -38.87 -0.26 2.19 16 11 C -0.20 -4.07 9.25 -39.15 -0.36 -4.44 16 12 C -0.09 -1.67 9.46 -39.14 -0.37 -2.04 16 13 C 0.03 0.62 6.73 -82.92 -0.56 0.06 16 14 C -0.05 -0.71 5.89 -104.75 -0.62 -1.33 16 15 C -0.06 -0.85 9.69 -38.93 -0.38 -1.23 16 16 C -0.17 -1.96 8.28 -39.49 -0.33 -2.29 16 17 C 0.11 1.37 5.66 -82.53 -0.47 0.90 16 18 C 0.11 1.09 5.28 -4.97 -0.03 1.07 16 19 N -0.53 -5.19 4.72 -235.75 -1.11 -6.30 16 20 C 0.01 0.13 5.33 -3.71 -0.02 0.11 16 21 C 0.06 0.57 7.01 37.21 0.26 0.84 16 22 O -0.39 -3.87 10.83 -35.23 -0.38 -4.25 16 23 C 0.06 0.50 7.01 37.20 0.26 0.76 16 24 C 0.02 0.15 5.64 -3.72 -0.02 0.13 16 25 N -0.46 -6.58 10.26 -9.18 -0.09 -6.68 16 26 C 0.10 1.39 10.59 -17.18 -0.18 1.21 16 27 N -0.43 -8.36 9.49 -9.61 -0.09 -8.45 16 28 C 0.04 0.74 11.14 -17.36 -0.19 0.55 16 29 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.14 2.70 5.75 -52.49 -0.30 2.40 16 31 H 0.12 1.73 6.21 -52.49 -0.33 1.41 16 32 H 0.14 1.98 7.63 -52.49 -0.40 1.58 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.09 0.88 8.04 -51.93 -0.42 0.46 16 35 H 0.05 0.41 8.01 -51.93 -0.42 0.00 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.91 6.27 -51.93 -0.33 0.58 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 43 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.16 1.97 6.20 -52.49 -0.33 1.64 16 45 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 372.95 15.07 5.62 5.62 Total: -1.00 -29.93 372.95 -9.11 -39.04 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.72 Total: 5.84 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -3.06 Total: -12.36 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -0.54 Total: -43.80 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.38 Total: -8.33 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.93 -9.11 -39.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239582637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.464 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds