Wall clock time and date at job start Sat Apr 11 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86796 * 120.00434 * 2 1 4 4 H 1.48501 * 109.47648 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47020 * 300.00364 * 3 2 1 6 6 H 1.48503 * 109.46772 * 59.99919 * 3 2 1 7 7 C 1.38656 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00304 * 179.97438 * 7 2 1 9 9 O 1.34816 * 120.00267 * 0.02562 * 7 2 1 10 10 C 1.35708 * 117.00194 * 185.06881 * 9 7 2 11 11 C 1.39424 * 120.39069 * 354.76812 * 10 9 7 12 12 C 1.38224 * 118.45597 * 180.26052 * 11 10 9 13 13 C 1.39427 * 119.14526 * 359.75134 * 12 11 10 14 14 C 1.48293 * 119.64613 * 179.97438 * 13 12 11 15 15 C 1.39821 * 120.53539 * 180.02562 * 14 13 12 16 16 C 1.38404 * 118.30753 * 180.02562 * 15 14 13 17 17 C 1.38325 * 119.28211 * 359.97438 * 16 15 14 18 18 C 1.50707 * 119.47756 * 179.97438 * 17 16 15 19 19 N 1.46898 * 109.46696 * 95.00318 * 18 17 16 20 20 C 1.47014 * 111.00119 * 293.63364 * 19 18 17 21 21 C 1.53100 * 109.25817 * 177.61147 * 20 19 18 22 22 O 1.43017 * 109.25803 * 56.84752 * 21 20 19 23 23 C 1.43008 * 113.73981 * 301.33179 * 22 21 20 24 24 C 1.47013 * 111.00009 * 170.00128 * 19 18 17 25 25 N 1.31901 * 121.04657 * 0.02562 * 17 16 15 26 26 C 1.31736 * 121.85343 * 359.69601 * 25 17 16 27 27 N 1.32685 * 120.69862 * 0.02562 * 13 12 11 28 28 C 1.31657 * 121.68705 * 359.97438 * 27 13 12 29 29 H 0.96996 * 119.99617 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.77129 * 0.02562 * 11 10 9 31 31 H 1.08001 * 120.42351 * 179.72881 * 12 11 10 32 32 H 1.08001 * 120.85256 * 359.97438 * 15 14 13 33 33 H 1.07990 * 120.36154 * 180.02562 * 16 15 14 34 34 H 1.09002 * 109.46943 * 214.99777 * 18 17 16 35 35 H 1.08994 * 109.47326 * 335.00438 * 18 17 16 36 36 H 1.08997 * 109.50615 * 297.54254 * 20 19 18 37 37 H 1.08993 * 109.50533 * 57.67309 * 20 19 18 38 38 H 1.08996 * 109.50534 * 296.91411 * 21 20 19 39 39 H 1.09001 * 109.50896 * 176.78244 * 21 20 19 40 40 H 1.09005 * 109.50667 * 298.73070 * 23 22 21 41 41 H 1.09001 * 109.54103 * 178.63246 * 23 22 21 42 42 H 1.09005 * 109.50693 * 302.32432 * 24 19 18 43 43 H 1.09004 * 109.51046 * 62.45125 * 24 19 18 44 44 H 1.08000 * 119.70911 * 180.29069 * 26 25 17 45 45 H 1.08000 * 119.60916 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8909 2.3963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3684 -0.0016 10 6 2.0697 -3.5042 0.1048 11 6 3.4627 -3.4460 0.0997 12 6 4.1717 -4.6279 0.2048 13 6 3.4746 -5.8302 0.3169 14 6 4.2240 -7.1049 0.4297 15 6 3.5439 -8.3213 0.5426 16 6 4.2892 -9.4829 0.6457 17 6 5.6702 -9.4040 0.6334 18 6 6.4861 -10.6661 0.7461 19 7 6.8477 -11.1368 -0.5977 20 6 5.6558 -11.5642 -1.3446 21 6 6.0699 -11.9896 -2.7558 22 8 7.0533 -13.0243 -2.6671 23 6 8.2279 -12.6420 -1.9465 24 6 7.8356 -12.2232 -0.5272 25 7 6.2842 -8.2416 0.5257 26 6 5.6175 -7.1104 0.4197 27 7 2.1479 -5.8460 0.3227 28 6 1.4426 -4.7386 0.2244 29 1 -0.4849 0.8400 -0.0004 30 1 3.9759 -2.4998 0.0118 31 1 5.2516 -4.6202 0.1997 32 1 2.4644 -8.3536 0.5499 33 1 3.7980 -10.4406 0.7339 34 1 7.3927 -10.4629 1.3160 35 1 5.9014 -11.4326 1.2544 36 1 5.1882 -12.4057 -0.8334 37 1 4.9490 -10.7369 -1.4066 38 1 6.4887 -11.1341 -3.2857 39 1 5.1983 -12.3612 -3.2946 40 1 8.7094 -11.8055 -2.4529 41 1 8.9175 -13.4849 -1.8999 42 1 8.7200 -11.8769 0.0076 43 1 7.4029 -13.0753 -0.0028 44 1 6.1557 -6.1785 0.3286 45 1 0.3639 -4.7905 0.2322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239582637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:28 Heat of formation + Delta-G solvation = -11.870020 kcal Electronic energy + Delta-G solvation = -27851.750841 eV Core-core repulsion = 23834.323774 eV Total energy + Delta-G solvation = -4017.427067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.70880 -41.03987 -40.24625 -38.98883 -36.89359 -34.57399 -33.88127 -33.45346 -32.74097 -32.06581 -30.81573 -28.87463 -27.48585 -25.87260 -25.35635 -24.91154 -23.99877 -23.33874 -22.27846 -21.33562 -20.03571 -19.16343 -18.02126 -17.72038 -17.59143 -17.25246 -16.94719 -16.59082 -16.31296 -16.00553 -15.95488 -15.85683 -15.57733 -15.38734 -15.28136 -15.06906 -14.61926 -14.49392 -14.17304 -13.93084 -13.85280 -13.62034 -13.41498 -13.18752 -12.94989 -12.79687 -12.71218 -12.36447 -12.13275 -12.11237 -11.72915 -11.56020 -11.11511 -10.85082 -10.69793 -10.61017 -10.54453 -10.39060 -10.23360 -9.38754 -8.88897 -8.55901 -6.22725 -0.40781 0.31609 0.33048 0.79519 1.36164 1.44111 1.54136 2.11846 2.49549 2.80585 2.92663 3.03973 3.06485 3.23375 3.27324 3.47945 3.68470 3.79879 3.93824 3.94753 4.00522 4.02194 4.11163 4.16768 4.20485 4.28526 4.32682 4.42645 4.47243 4.53657 4.62224 4.69844 4.72193 4.75351 4.81599 4.90042 4.90292 4.95467 5.01797 5.12605 5.23835 5.29854 5.42716 5.66328 5.76070 5.88985 5.89983 5.95399 6.17269 6.86867 7.00250 7.02507 7.58891 8.65414 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026813 B = 0.001809 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.026938 B =15477.245592 C =15656.368961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.016 4.016 3 Si 1.020 2.980 4 H -0.248 1.248 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.417 4.417 8 H 0.109 0.891 9 O -0.207 6.207 10 C 0.080 3.920 11 C -0.197 4.197 12 C -0.095 4.095 13 C 0.058 3.942 14 C -0.078 4.078 15 C -0.060 4.060 16 C -0.158 4.158 17 C 0.120 3.880 18 C 0.112 3.888 19 N -0.544 5.544 20 C 0.017 3.983 21 C 0.063 3.937 22 O -0.403 6.403 23 C 0.060 3.940 24 C 0.022 3.978 25 N -0.478 5.478 26 C 0.103 3.897 27 N -0.439 5.439 28 C 0.028 3.972 29 H 0.276 0.724 30 H 0.145 0.855 31 H 0.164 0.836 32 H 0.141 0.859 33 H 0.158 0.842 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.111 0.889 40 H 0.054 0.946 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.049 0.951 44 H 0.172 0.828 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.742 -22.517 -0.057 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.216 4.216 3 Si 0.839 3.161 4 H -0.171 1.171 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.493 4.493 8 H 0.126 0.874 9 O -0.111 6.111 10 C 0.026 3.974 11 C -0.223 4.223 12 C -0.114 4.114 13 C -0.078 4.078 14 C -0.081 4.081 15 C -0.086 4.086 16 C -0.178 4.178 17 C -0.018 4.018 18 C -0.016 4.016 19 N -0.269 5.269 20 C -0.111 4.111 21 C -0.014 4.014 22 O -0.322 6.322 23 C -0.017 4.017 24 C -0.106 4.106 25 N -0.187 5.187 26 C -0.055 4.055 27 N -0.148 5.148 28 C -0.134 4.134 29 H 0.086 0.914 30 H 0.162 0.838 31 H 0.182 0.818 32 H 0.159 0.841 33 H 0.175 0.825 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.129 0.871 40 H 0.072 0.928 41 H 0.136 0.864 42 H 0.119 0.881 43 H 0.068 0.932 44 H 0.189 0.811 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 16.001 -22.892 -0.342 27.932 hybrid contribution -1.172 1.643 0.423 2.062 sum 14.829 -21.249 0.082 25.912 Atomic orbital electron populations 1.70168 1.08081 1.29237 1.47064 1.26629 0.96843 1.02816 0.95292 0.84507 0.78470 0.74591 0.78562 1.17075 1.19390 1.19422 1.21957 0.92849 0.80947 1.53514 0.87357 1.83946 1.35677 1.12385 1.79085 1.20954 0.92326 0.89155 0.95006 1.21696 0.93049 1.00394 1.07161 1.22064 1.01904 0.90741 0.96727 1.19479 0.89151 0.92632 1.06551 1.19495 0.94287 0.91965 1.02372 1.21794 1.01426 0.91197 0.94205 1.22119 0.94265 0.99674 1.01777 1.21365 0.91440 0.93633 0.95393 1.20926 0.99486 0.91087 0.90062 1.62088 1.12606 1.36266 1.15985 1.22829 0.92758 0.99991 0.95516 1.22714 0.92401 0.90803 0.95460 1.87956 1.29168 1.39325 1.75782 1.22822 0.87226 1.01337 0.90296 1.22831 0.96744 0.92506 0.98521 1.67485 1.40923 0.98299 1.11971 1.23019 0.89863 0.97149 0.95468 1.67378 1.07976 1.29180 1.10294 1.21885 1.00264 0.85166 1.06092 0.91448 0.83751 0.81838 0.84144 0.82461 0.88462 0.91148 0.93008 0.90180 0.93157 0.87098 0.92760 0.86365 0.88129 0.93247 0.81122 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.72 13.67 21.61 0.30 -52.42 16 2 C -0.02 -0.86 5.49 84.83 0.47 -0.40 16 3 Si 1.02 39.97 29.55 68.60 2.03 42.00 16 4 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 7 C -0.42 -22.49 9.50 67.92 0.64 -21.85 16 8 H 0.11 5.25 5.25 -2.91 -0.02 5.23 16 9 O -0.21 -11.61 9.76 -22.12 -0.22 -11.82 16 10 C 0.08 3.75 6.67 22.73 0.15 3.90 16 11 C -0.20 -7.88 9.25 22.55 0.21 -7.67 16 12 C -0.10 -3.15 9.46 22.55 0.21 -2.93 16 13 C 0.06 2.01 6.73 41.98 0.28 2.29 16 14 C -0.08 -2.25 5.89 -19.95 -0.12 -2.37 16 15 C -0.06 -1.53 9.69 22.69 0.22 -1.31 16 16 C -0.16 -3.20 8.28 22.33 0.18 -3.01 16 17 C 0.12 2.56 5.66 42.57 0.24 2.80 16 18 C 0.11 1.77 5.28 85.56 0.45 2.22 16 19 N -0.54 -8.92 4.72 -899.79 -4.24 -13.16 16 20 C 0.02 0.27 5.33 86.31 0.46 0.73 16 21 C 0.06 1.00 7.01 72.02 0.50 1.51 16 22 O -0.40 -7.15 10.83 -148.98 -1.61 -8.76 16 23 C 0.06 0.78 7.01 72.01 0.50 1.29 16 24 C 0.02 0.27 5.64 86.31 0.49 0.75 16 25 N -0.48 -12.08 10.26 -182.95 -1.88 -13.96 16 26 C 0.10 2.66 10.59 84.98 0.90 3.56 16 27 N -0.44 -16.88 9.49 -184.31 -1.75 -18.63 16 28 C 0.03 1.18 11.14 84.89 0.95 2.12 16 29 H 0.28 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.14 5.57 5.75 -2.91 -0.02 5.55 16 31 H 0.16 4.02 6.21 -2.91 -0.02 4.00 16 32 H 0.14 3.64 7.63 -2.91 -0.02 3.62 16 33 H 0.16 2.22 8.06 -2.92 -0.02 2.19 16 34 H 0.10 1.48 8.04 -2.39 -0.02 1.46 16 35 H 0.07 0.85 8.01 -2.39 -0.02 0.83 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 1.39 6.27 -2.39 -0.01 1.38 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.10 0.99 8.09 -2.38 -0.02 0.97 16 43 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.17 3.70 6.20 -2.91 -0.02 3.68 16 45 H 0.16 6.35 8.06 -2.91 -0.02 6.33 16 Total: -1.00 -68.34 372.95 0.40 -67.94 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 1.02 Total: 27.19 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 6.75 Total: -18.38 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -7.58 Total: -98.17 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -1.83 Total: -20.58 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -68.34 0.40 -67.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239582637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.074 kcal (2) G-P(sol) polarization free energy of solvation -68.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds