Wall clock time and date at job start Sat Apr 11 2020 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86802 * 120.00071 * 2 1 4 4 H 1.48497 * 109.47150 * 240.00515 * 3 2 1 5 5 H 1.48502 * 109.46999 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46964 * 120.00428 * 3 2 1 7 7 C 1.38658 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00099 * 179.97438 * 7 2 1 9 9 O 1.34815 * 120.00048 * 359.97438 * 7 2 1 10 10 C 1.35705 * 116.99799 * 185.05992 * 9 7 2 11 11 C 1.39428 * 120.39211 * 354.54605 * 10 9 7 12 12 C 1.38221 * 118.45458 * 179.72502 * 11 10 9 13 13 C 1.39418 * 119.14785 * 0.49403 * 12 11 10 14 14 C 1.48297 * 119.64930 * 179.77205 * 13 12 11 15 15 C 1.39387 * 120.54312 * 359.44368 * 14 13 12 16 16 N 1.31711 * 120.58732 * 179.75128 * 15 14 13 17 17 C 1.31918 * 121.85734 * 0.54143 * 16 15 14 18 18 C 1.38286 * 121.04172 * 359.72776 * 17 16 15 19 19 C 1.50707 * 120.35411 * 180.02562 * 18 17 16 20 20 N 1.46899 * 109.46551 * 269.97259 * 19 18 17 21 21 C 1.47014 * 111.00146 * 293.63583 * 20 19 18 22 22 C 1.53096 * 109.25811 * 177.61395 * 21 20 19 23 23 O 1.43007 * 109.26249 * 56.84544 * 22 21 20 24 24 C 1.43010 * 113.74164 * 301.32999 * 23 22 21 25 25 C 1.47013 * 110.99804 * 170.00179 * 20 19 18 26 26 C 1.38433 * 119.28863 * 359.97438 * 18 17 16 27 27 N 1.32690 * 120.69917 * 359.49067 * 13 12 11 28 28 C 1.31660 * 121.68183 * 0.25866 * 27 13 12 29 29 H 0.96999 * 119.99925 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.76909 * 359.97438 * 11 10 9 31 31 H 1.07999 * 120.42293 * 180.24022 * 12 11 10 32 32 H 1.08007 * 119.70756 * 0.02562 * 15 14 13 33 33 H 1.08000 * 119.48046 * 179.74515 * 17 16 15 34 34 H 1.08997 * 109.46918 * 29.96873 * 19 18 17 35 35 H 1.08998 * 109.46912 * 149.97258 * 19 18 17 36 36 H 1.09004 * 109.50301 * 297.54481 * 21 20 19 37 37 H 1.08996 * 109.50660 * 57.67612 * 21 20 19 38 38 H 1.09001 * 109.50436 * 296.90586 * 22 21 20 39 39 H 1.09002 * 109.54270 * 176.80821 * 22 21 20 40 40 H 1.09005 * 109.50713 * 298.73993 * 24 23 22 41 41 H 1.08996 * 109.55099 * 178.62401 * 24 23 22 42 42 H 1.08999 * 109.50839 * 302.32311 * 25 20 19 43 43 H 1.08999 * 109.50857 * 62.40997 * 25 20 19 44 44 H 1.08003 * 120.84871 * 179.97438 * 26 18 17 45 45 H 1.08000 * 119.60213 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0699 -3.5041 0.1056 11 6 3.4629 -3.4463 0.0945 12 6 4.1720 -4.6271 0.2109 13 6 3.4751 -5.8293 0.3242 14 6 4.2247 -7.1032 0.4445 15 6 5.6185 -7.1087 0.4337 16 7 6.2851 -8.2391 0.5454 17 6 5.6712 -9.4011 0.6603 18 6 4.2907 -9.4799 0.6737 19 6 3.6054 -10.8156 0.8062 20 7 3.3764 -11.3830 -0.5293 21 6 2.4095 -10.5748 -1.2864 22 6 2.2459 -11.1660 -2.6891 23 8 1.8412 -12.5333 -2.5805 24 6 2.7603 -13.3495 -1.8496 25 6 2.9291 -12.7804 -0.4383 26 6 3.5449 -8.3187 0.5652 27 7 2.1483 -5.8452 0.3310 28 6 1.4430 -4.7383 0.2271 29 1 -0.4850 0.8400 0.0004 30 1 3.9760 -2.5006 0.0013 31 1 5.2519 -4.6189 0.2100 32 1 6.1567 -6.1773 0.3372 33 1 6.2560 -10.3051 0.7454 34 1 4.2352 -11.4912 1.3849 35 1 2.6499 -10.6849 1.3142 36 1 1.4477 -10.5830 -0.7735 37 1 2.7730 -9.5501 -1.3634 38 1 3.1955 -11.1086 -3.2212 39 1 1.4882 -10.6043 -3.2354 40 1 3.7249 -13.3556 -2.3573 41 1 2.3750 -14.3672 -1.7880 42 1 3.6718 -13.3658 0.1037 43 1 1.9760 -12.8240 0.0887 44 1 2.4654 -8.3510 0.5725 45 1 0.3643 -4.7902 0.2368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245248991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:31 Heat of formation + Delta-G solvation = -13.057256 kcal Electronic energy + Delta-G solvation = -28274.187258 eV Core-core repulsion = 24256.708708 eV Total energy + Delta-G solvation = -4017.478550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.72528 -41.02047 -40.27315 -38.97873 -37.04308 -34.57887 -33.83364 -33.62605 -32.89433 -32.10649 -30.11686 -29.01781 -27.55954 -25.91120 -25.32373 -24.89058 -24.27861 -23.29247 -22.05747 -21.34062 -20.02755 -19.11990 -18.05592 -17.76673 -17.62702 -17.32433 -16.98647 -16.65361 -16.33176 -16.00827 -16.00653 -15.94415 -15.71547 -15.32956 -15.24889 -14.91577 -14.66317 -14.24329 -14.19028 -13.98852 -13.92953 -13.62394 -13.43449 -13.26944 -13.06069 -12.73903 -12.67741 -12.37846 -12.20769 -12.07004 -11.73751 -11.56482 -11.12256 -10.82916 -10.75418 -10.59079 -10.54972 -10.40960 -10.17355 -9.42859 -8.91519 -8.55733 -6.22865 -0.36382 0.22107 0.32484 0.83687 1.35839 1.46412 1.51790 2.12121 2.54376 2.79363 2.91672 3.01960 3.07894 3.22976 3.37615 3.48961 3.72001 3.76677 3.93499 3.95647 3.97358 4.01898 4.06030 4.10301 4.17287 4.25507 4.29234 4.36227 4.44825 4.56894 4.60250 4.70020 4.71396 4.76082 4.80179 4.90024 4.91432 4.94697 5.00727 5.19874 5.24929 5.25747 5.41011 5.65676 5.76859 5.84770 5.88564 5.93733 6.16501 6.86679 6.98951 7.00001 7.58579 8.65109 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.002173 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.291975 B =12884.413196 C =13928.026793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.016 4.016 3 Si 1.019 2.981 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.418 4.418 8 H 0.109 0.891 9 O -0.207 6.207 10 C 0.080 3.920 11 C -0.197 4.197 12 C -0.095 4.095 13 C 0.058 3.942 14 C -0.078 4.078 15 C 0.102 3.898 16 N -0.496 5.496 17 C 0.112 3.888 18 C -0.127 4.127 19 C 0.104 3.896 20 N -0.536 5.536 21 C 0.017 3.983 22 C 0.066 3.934 23 O -0.406 6.406 24 C 0.058 3.942 25 C 0.018 3.982 26 C -0.054 4.054 27 N -0.440 5.440 28 C 0.027 3.973 29 H 0.276 0.724 30 H 0.146 0.854 31 H 0.165 0.835 32 H 0.172 0.828 33 H 0.181 0.819 34 H 0.115 0.885 35 H 0.045 0.955 36 H 0.037 0.963 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.062 0.938 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.040 0.960 44 H 0.130 0.870 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.712 -22.789 0.101 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.215 4.215 3 Si 0.838 3.162 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.494 4.494 8 H 0.126 0.874 9 O -0.111 6.111 10 C 0.026 3.974 11 C -0.223 4.223 12 C -0.114 4.114 13 C -0.078 4.078 14 C -0.081 4.081 15 C -0.056 4.056 16 N -0.203 5.203 17 C -0.045 4.045 18 C -0.130 4.130 19 C -0.024 4.024 20 N -0.261 5.261 21 C -0.111 4.111 22 C -0.011 4.011 23 O -0.325 6.325 24 C -0.018 4.018 25 C -0.109 4.109 26 C -0.081 4.081 27 N -0.149 5.149 28 C -0.134 4.134 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.183 0.817 32 H 0.189 0.811 33 H 0.198 0.802 34 H 0.134 0.866 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.080 0.920 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.058 0.942 44 H 0.148 0.852 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.032 -23.431 -0.183 25.899 hybrid contribution -1.353 2.151 0.427 2.576 sum 9.680 -21.280 0.244 23.379 Atomic orbital electron populations 1.70160 1.08093 1.29379 1.46939 1.26636 0.96833 1.02833 0.95248 0.84631 0.77452 0.73991 0.80127 1.17912 1.19776 1.17993 1.21878 0.92849 0.80957 1.53717 0.87356 1.83945 1.35653 1.12379 1.79089 1.20946 0.92354 0.89126 0.95009 1.21702 0.93012 1.00448 1.07113 1.22062 1.01936 0.90696 0.96692 1.19474 0.89131 0.92638 1.06574 1.19442 0.94276 0.91714 1.02698 1.23060 0.89808 0.97516 0.95240 1.67751 1.40864 0.98879 1.12813 1.23051 0.91549 0.96121 0.93820 1.20770 0.95200 0.95275 1.01730 1.20994 0.99489 0.92034 0.89880 1.62255 1.45229 1.02566 1.16034 1.22777 0.94235 0.98389 0.95705 1.22659 1.01063 0.82181 0.95207 1.87962 1.48670 1.20425 1.75459 1.22871 0.93816 0.94903 0.90239 1.22884 1.00563 0.88871 0.98592 1.21639 1.00731 0.91168 0.94576 1.67381 1.08012 1.29183 1.10324 1.21851 1.00179 0.85227 1.06186 0.91439 0.83676 0.81739 0.81065 0.80203 0.86647 0.93645 0.94521 0.90575 0.92241 0.88016 0.91966 0.86468 0.86966 0.94198 0.85206 0.82703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.80 13.67 21.61 0.30 -52.50 16 2 C -0.02 -0.84 5.49 84.83 0.47 -0.38 16 3 Si 1.02 39.87 29.55 68.60 2.03 41.90 16 4 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 5 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 6 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 7 C -0.42 -22.55 9.50 67.92 0.64 -21.90 16 8 H 0.11 5.21 5.25 -2.91 -0.02 5.20 16 9 O -0.21 -11.60 9.76 -22.09 -0.22 -11.81 16 10 C 0.08 3.75 6.67 22.73 0.15 3.90 16 11 C -0.20 -7.83 9.25 22.55 0.21 -7.62 16 12 C -0.09 -3.11 9.46 22.55 0.21 -2.89 16 13 C 0.06 2.00 6.73 41.98 0.28 2.29 16 14 C -0.08 -2.26 5.89 -19.95 -0.12 -2.37 16 15 C 0.10 2.58 10.59 84.99 0.90 3.48 16 16 N -0.50 -12.11 10.35 -194.91 -2.02 -14.12 16 17 C 0.11 2.26 10.85 84.69 0.92 3.18 16 18 C -0.13 -2.61 4.90 -19.80 -0.10 -2.71 16 19 C 0.10 1.60 5.14 85.56 0.44 2.04 16 20 N -0.54 -8.84 4.72 -899.77 -4.24 -13.09 16 21 C 0.02 0.34 5.30 86.31 0.46 0.80 16 22 C 0.07 1.25 7.01 72.01 0.50 1.76 16 23 O -0.41 -8.12 10.83 -148.98 -1.61 -9.73 16 24 C 0.06 0.78 7.01 72.02 0.50 1.28 16 25 C 0.02 0.23 5.64 86.32 0.49 0.72 16 26 C -0.05 -1.41 7.62 22.69 0.17 -1.24 16 27 N -0.44 -16.93 9.49 -184.32 -1.75 -18.68 16 28 C 0.03 1.16 11.14 84.89 0.95 2.11 16 29 H 0.28 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.15 5.55 5.75 -2.91 -0.02 5.53 16 31 H 0.17 3.97 6.21 -2.91 -0.02 3.96 16 32 H 0.17 3.60 6.20 -2.91 -0.02 3.58 16 33 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.12 1.17 7.99 -2.39 -0.02 1.15 16 35 H 0.05 0.75 8.07 -2.39 -0.02 0.73 16 36 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.08 1.75 6.03 -2.39 -0.01 1.74 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.11 0.85 8.09 -2.39 -0.02 0.83 16 43 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.13 3.60 7.61 -2.91 -0.02 3.58 16 45 H 0.16 6.33 8.06 -2.91 -0.02 6.31 16 Total: -1.00 -68.17 372.35 0.59 -67.58 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 1.02 Total: 28.03 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 7.08 Total: -17.57 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -7.72 Total: -98.39 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -1.83 Total: -21.54 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -68.17 0.59 -67.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245248991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.519 kcal (2) G-P(sol) polarization free energy of solvation -68.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds