Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00066 * 2 1 4 4 H 1.48499 * 109.47088 * 272.02106 * 3 2 1 5 5 H 1.48498 * 109.47152 * 32.01892 * 3 2 1 6 6 H 1.48501 * 109.47261 * 152.02133 * 3 2 1 7 7 C 1.38815 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99310 * 336.83525 * 7 2 1 9 9 N 1.36936 * 120.00477 * 156.82892 * 7 2 1 10 10 C 1.46500 * 119.99786 * 320.89240 * 9 7 2 11 11 C 1.53007 * 109.46806 * 269.99691 * 10 9 7 12 12 N 1.46494 * 109.47099 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00253 * 180.02562 * 12 11 10 14 14 O 1.21609 * 119.99722 * 359.97438 * 13 12 11 15 15 C 1.47464 * 120.00270 * 179.72086 * 13 12 11 16 16 C 1.36228 * 126.36428 * 179.97438 * 15 13 12 17 17 O 1.34274 * 107.12301 * 179.90181 * 16 15 13 18 18 C 1.34476 * 108.16671 * 0.36529 * 17 16 15 19 19 C 1.47876 * 125.48884 * 179.74876 * 18 17 16 20 20 C 1.39550 * 120.14182 * 179.74554 * 19 18 17 21 21 C 1.37972 * 119.85192 * 179.69938 * 20 19 18 22 22 C 1.38343 * 120.14182 * 0.60184 * 21 20 19 23 23 C 1.38346 * 120.29069 * 359.67748 * 22 21 20 24 24 C 1.37972 * 120.14323 * 0.02562 * 23 22 21 25 25 N 1.30895 * 109.02230 * 359.76986 * 18 17 16 26 26 C 1.46501 * 120.00077 * 140.88493 * 9 7 2 27 27 C 1.52996 * 117.49716 * 4.01874 * 26 9 7 28 28 C 1.52997 * 60.00257 * 252.51089 * 27 26 9 29 29 H 0.97000 * 119.99957 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46962 * 150.00180 * 10 9 7 31 31 H 1.08999 * 109.47475 * 29.98956 * 10 9 7 32 32 H 1.08994 * 109.47279 * 59.99789 * 11 10 9 33 33 H 1.09005 * 109.46802 * 300.00169 * 11 10 9 34 34 H 0.97005 * 120.00099 * 359.97438 * 12 11 10 35 35 H 1.08010 * 126.43898 * 359.97438 * 16 15 13 36 36 H 1.07994 * 120.07096 * 0.02562 * 20 19 18 37 37 H 1.08007 * 119.92219 * 180.30306 * 21 20 19 38 38 H 1.08006 * 119.85622 * 179.69656 * 22 21 20 39 39 H 1.08003 * 119.92831 * 180.02562 * 23 22 21 40 40 H 1.07997 * 120.07170 * 180.02562 * 24 23 22 41 41 H 1.09000 * 115.54531 * 149.72496 * 26 9 7 42 42 H 1.08997 * 117.50243 * 0.02562 * 27 26 9 43 43 H 1.09001 * 117.49987 * 145.02141 * 27 26 9 44 44 H 1.08997 * 117.49873 * 252.51559 * 28 27 26 45 45 H 1.08996 * 117.51690 * 107.47988 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4549 2.0711 -1.3992 5 1 1.4696 2.6400 0.7423 6 1 3.5684 1.4282 0.6568 7 6 2.0103 -1.2021 0.0005 8 1 1.5355 -2.0995 0.3689 9 7 3.2968 -1.2502 -0.4660 10 6 3.6779 -0.4691 -1.6454 11 6 3.4609 -1.3095 -2.9055 12 7 3.8425 -0.5288 -4.0849 13 6 3.7346 -1.0693 -5.3148 14 8 3.3208 -2.2054 -5.4455 15 6 4.1129 -0.2812 -6.5024 16 6 4.0566 -0.6963 -7.7987 17 8 4.4861 0.3235 -8.5593 18 6 4.8089 1.3454 -7.7470 19 6 5.3305 2.6582 -8.1846 20 6 5.6250 3.6446 -7.2424 21 6 6.1172 4.8651 -7.6569 22 6 6.3070 5.1164 -9.0040 23 6 6.0115 4.1448 -9.9435 24 6 5.5245 2.9179 -9.5419 25 7 4.5877 0.9908 -6.5066 26 6 4.2921 -2.0825 0.2143 27 6 3.8113 -2.9464 1.3819 28 6 4.6660 -1.7059 1.6493 29 1 -0.4850 0.8400 -0.0004 30 1 4.7287 -0.1893 -1.5719 31 1 3.0650 0.4306 -1.6990 32 1 2.4101 -1.5895 -2.9791 33 1 4.0738 -2.2094 -2.8520 34 1 4.1722 0.3775 -3.9807 35 1 3.7272 -1.6635 -8.1489 36 1 5.4730 3.4511 -6.1909 37 1 6.3501 5.6276 -6.9283 38 1 6.6879 6.0751 -9.3237 39 1 6.1624 4.3471 -10.9936 40 1 5.2946 2.1602 -10.2762 41 1 5.0795 -2.4877 -0.4213 42 1 2.7545 -2.8958 1.6437 43 1 4.2824 -3.9203 1.5148 44 1 5.6994 -1.8637 1.9580 45 1 4.1718 -0.8386 2.0870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267336088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = 70.918416 kcal Electronic energy + Delta-G solvation = -28096.421988 eV Core-core repulsion = 24082.584897 eV Total energy + Delta-G solvation = -4013.837091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.60928 -39.47641 -39.22722 -37.35129 -35.13908 -34.93805 -33.20168 -32.72301 -31.42476 -31.34145 -29.48455 -27.99385 -24.81685 -24.24308 -23.86989 -22.91431 -22.07935 -21.46540 -21.27110 -20.36863 -19.67278 -18.60916 -17.28456 -17.05758 -16.62611 -16.16688 -16.05474 -15.75083 -15.62429 -15.21221 -15.02010 -14.77012 -14.27161 -13.89859 -13.84068 -13.77750 -13.44683 -13.33748 -13.16919 -12.54890 -12.25397 -11.92467 -11.87861 -11.76142 -11.56802 -11.53386 -11.04138 -10.89430 -10.74062 -10.44074 -10.14695 -10.11795 -10.03940 -9.87063 -9.53084 -9.45023 -9.41999 -8.79245 -8.61159 -8.51969 -6.81392 -6.08585 -3.52619 0.26408 0.94497 1.14589 2.05608 2.21557 3.16652 3.23880 3.31361 3.41101 3.46461 3.47089 3.58236 4.41391 4.43850 4.49596 4.58480 4.65065 4.69445 4.81009 4.94051 4.96417 5.04914 5.17298 5.20863 5.37756 5.44146 5.57880 5.67260 5.74136 5.77118 5.79316 5.96772 5.98307 6.00222 6.05510 6.06492 6.16948 6.41633 6.43659 6.43795 6.58017 6.65185 6.80824 6.91685 7.10287 7.19388 7.74568 7.96794 8.33265 8.34936 8.89422 9.61029 10.00081 11.05837 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012980 B = 0.002516 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.580163 B =11126.232335 C =12057.285403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.042 3.958 3 Si 0.871 3.129 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.275 4.275 8 H 0.085 0.915 9 N -0.567 5.567 10 C 0.128 3.872 11 C 0.100 3.900 12 N -0.704 5.704 13 C 0.596 3.404 14 O -0.537 6.537 15 C -0.059 4.059 16 C 0.013 3.987 17 O -0.192 6.192 18 C 0.235 3.765 19 C -0.019 4.019 20 C -0.069 4.069 21 C -0.121 4.121 22 C -0.101 4.101 23 C -0.122 4.122 24 C -0.089 4.089 25 N -0.446 5.446 26 C 0.118 3.882 27 C -0.187 4.187 28 C -0.222 4.222 29 H 0.265 0.735 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.405 0.595 35 H 0.235 0.765 36 H 0.141 0.859 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.252 7.815 -19.409 25.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.160 4.160 3 Si 0.701 3.299 4 H -0.211 1.211 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.403 4.403 8 H 0.102 0.898 9 N -0.285 5.285 10 C 0.002 3.998 11 C -0.025 4.025 12 N -0.354 5.354 13 C 0.380 3.620 14 O -0.415 6.415 15 C -0.181 4.181 16 C -0.060 4.060 17 O -0.077 6.077 18 C 0.029 3.971 19 C -0.020 4.020 20 C -0.088 4.088 21 C -0.139 4.139 22 C -0.119 4.119 23 C -0.140 4.140 24 C -0.108 4.108 25 N -0.176 5.176 26 C 0.010 3.990 27 C -0.225 4.225 28 C -0.263 4.263 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.239 0.761 35 H 0.251 0.749 36 H 0.159 0.841 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.844 7.454 -18.920 24.600 hybrid contribution 0.294 0.897 -0.411 1.030 sum 14.138 8.351 -19.330 25.363 Atomic orbital electron populations 1.69872 1.06039 1.26961 1.50141 1.25519 0.95062 0.97813 0.97605 0.87056 0.80873 0.84682 0.77293 1.21074 1.22701 1.19020 1.18725 0.86267 0.94646 1.40671 0.89800 1.43509 1.07345 1.52170 1.25525 1.21375 0.98375 0.94500 0.85543 1.22346 1.01827 0.95097 0.83268 1.45917 1.64915 1.18721 1.05828 1.16722 0.78320 0.85183 0.81783 1.90829 1.46981 1.17698 1.86000 1.21965 1.08413 0.92331 0.95385 1.25394 0.98778 0.92626 0.89243 1.84411 1.62727 1.21373 1.39231 1.23750 1.00340 0.90031 0.82977 1.17287 1.03243 0.87392 0.94059 1.21267 0.95620 0.91832 1.00095 1.21167 0.99578 0.96834 0.96274 1.21399 0.98014 0.99336 0.93185 1.21085 0.99754 0.93082 1.00117 1.21247 0.97701 0.97751 0.94147 1.70961 1.15146 1.11430 1.20035 1.21191 0.93947 0.97249 0.86662 1.23067 1.01174 0.93487 1.04792 1.23367 0.98405 0.99644 1.04877 0.92505 0.93385 0.91828 0.90184 0.91814 0.76062 0.74902 0.84141 0.84905 0.85408 0.85171 0.85059 0.88942 0.87815 0.90397 0.90765 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.97 55.49 0.78 -25.85 16 2 C 0.04 1.17 5.28 -17.43 -0.09 1.08 16 3 Si 0.87 21.48 25.32 -169.99 -4.30 17.18 16 4 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.27 -7.41 8.93 -15.06 -0.13 -7.54 16 8 H 0.08 2.45 6.85 -52.49 -0.36 2.09 16 9 N -0.57 -13.03 2.38 -165.66 -0.39 -13.43 16 10 C 0.13 2.66 4.68 -4.04 -0.02 2.64 16 11 C 0.10 1.95 6.00 -4.04 -0.02 1.92 16 12 N -0.70 -12.19 5.55 -61.37 -0.34 -12.53 16 13 C 0.60 10.34 7.82 -12.50 -0.10 10.24 16 14 O -0.54 -10.66 16.89 5.27 0.09 -10.57 16 15 C -0.06 -0.87 6.99 -83.09 -0.58 -1.45 16 16 C 0.01 0.15 11.94 30.01 0.36 0.51 16 17 O -0.19 -2.17 10.45 5.31 0.06 -2.11 16 18 C 0.23 2.86 7.88 -14.01 -0.11 2.75 16 19 C -0.02 -0.19 5.87 -104.98 -0.62 -0.80 16 20 C -0.07 -0.64 9.68 -39.19 -0.38 -1.02 16 21 C -0.12 -0.86 10.03 -39.64 -0.40 -1.26 16 22 C -0.10 -0.61 10.04 -39.50 -0.40 -1.01 16 23 C -0.12 -0.77 10.03 -39.64 -0.40 -1.16 16 24 C -0.09 -0.70 9.71 -39.19 -0.38 -1.08 16 25 N -0.45 -6.28 10.65 -8.26 -0.09 -6.36 16 26 C 0.12 2.34 6.57 -67.93 -0.45 1.90 16 27 C -0.19 -3.55 9.80 -26.73 -0.26 -3.81 16 28 C -0.22 -4.20 10.35 -26.73 -0.28 -4.47 16 29 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.05 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.06 1.44 3.45 -51.93 -0.18 1.26 16 32 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.40 6.41 8.20 -40.82 -0.33 6.07 16 35 H 0.23 1.96 8.06 -52.48 -0.42 1.54 16 36 H 0.14 1.34 7.82 -52.49 -0.41 0.93 16 37 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 39 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 40 H 0.13 0.87 7.89 -52.49 -0.41 0.46 16 41 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 42 H 0.10 2.22 6.44 -51.93 -0.33 1.88 16 43 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 385.65 15.07 5.81 5.81 Total: -1.00 -32.70 385.65 -8.50 -41.19 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.85 Total: 9.24 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -4.25 Total: -2.56 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.05 Total: -58.18 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.14 Total: -12.68 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.30 Total: 17.18 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.70 -8.50 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267336088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.112 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds