Wall clock time and date at job start Sat Apr 11 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 O 1.21277 * 120.00023 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99464 * 179.97438 * 10 9 7 13 13 C 1.47230 * 121.34309 * 179.97438 * 12 10 9 14 14 C 1.52769 * 107.97145 * 115.65186 * 13 12 10 15 15 C 1.50713 * 110.84481 * 47.72439 * 14 13 12 16 16 N 1.32417 * 117.36341 * 159.78990 * 15 14 13 17 17 C 1.32344 * 122.38658 * 179.49203 * 16 15 14 18 18 C 1.48175 * 119.77563 * 179.97438 * 17 16 15 19 19 O 1.21513 * 119.99856 * 180.02562 * 18 17 16 20 20 N 1.34778 * 119.99790 * 359.97438 * 18 17 16 21 21 C 1.46980 * 127.25507 * 359.68455 * 20 18 17 22 22 C 1.50587 * 107.13625 * 179.91562 * 21 20 18 23 23 C 1.30400 * 110.11809 * 0.36824 * 22 21 20 24 24 C 1.46982 * 127.25048 * 180.02562 * 20 18 17 25 25 C 1.39314 * 120.44674 * 359.94688 * 17 16 15 26 26 C 1.38383 * 118.68480 * 0.24146 * 25 17 16 27 27 C 1.38027 * 122.58425 * 339.67779 * 15 14 13 28 28 C 1.46712 * 121.35260 * 359.71486 * 12 10 9 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.75793 * 235.26868 * 13 12 10 33 33 H 1.08993 * 109.76126 * 356.02705 * 13 12 10 34 34 H 1.09006 * 109.20100 * 168.07405 * 14 13 12 35 35 H 1.08998 * 109.20415 * 287.37022 * 14 13 12 36 36 H 1.09008 * 109.90374 * 299.41407 * 21 20 18 37 37 H 1.08996 * 109.90928 * 60.65870 * 21 20 18 38 38 H 1.07995 * 124.94331 * 180.14689 * 22 21 20 39 39 H 1.07992 * 124.94035 * 179.79588 * 23 22 21 40 40 H 1.08998 * 109.90509 * 299.33710 * 24 20 18 41 41 H 1.09003 * 109.90750 * 60.40913 * 24 20 18 42 42 H 1.08005 * 120.66305 * 180.26660 * 25 17 16 43 43 H 1.07998 * 120.53693 * 180.02562 * 26 25 17 44 44 H 1.09004 * 109.44053 * 344.34134 * 28 12 10 45 45 H 1.09001 * 109.44228 * 104.23295 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 8 3.4226 -3.4231 -0.0097 12 7 1.7808 -4.9153 -0.0155 13 6 2.7110 -6.0565 -0.0211 14 6 2.5220 -6.8250 1.2857 15 6 1.0598 -7.0688 1.5578 16 7 0.7516 -8.0443 2.3985 17 6 -0.4992 -8.3376 2.7161 18 6 -0.7782 -9.4423 3.6634 19 8 -1.9252 -9.7153 3.9576 20 7 0.2402 -10.1448 4.1981 21 6 1.6768 -9.9578 3.9504 22 6 2.4069 -10.9817 4.7788 23 6 1.5546 -11.7115 5.4432 24 6 0.1477 -11.2640 5.1463 25 6 -1.5554 -7.6143 2.1663 26 6 -1.2692 -6.5903 1.2806 27 6 0.0596 -6.3201 0.9711 28 6 0.3451 -5.2172 -0.0102 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.4901 -6.7078 -0.8669 33 1 3.7369 -5.6954 -0.0913 34 1 3.0383 -7.7825 1.2164 35 1 2.9480 -6.2474 2.1060 36 1 1.8940 -10.1099 2.8930 37 1 1.9782 -8.9550 4.2530 38 1 3.4800 -11.0973 4.8145 39 1 1.8193 -12.5192 6.1093 40 1 -0.3379 -10.9334 6.0645 41 1 -0.4187 -12.0820 4.7010 42 1 -2.5773 -7.8479 2.4264 43 1 -2.0648 -6.0101 0.8370 44 1 -0.2122 -4.3249 0.2752 45 1 0.0372 -5.5334 -1.0069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269025197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:53 Heat of formation + Delta-G solvation = 6.921351 kcal Electronic energy + Delta-G solvation = -28932.183341 eV Core-core repulsion = 24915.571129 eV Total energy + Delta-G solvation = -4016.612212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.20913 -40.13687 -38.87658 -37.92800 -35.93154 -33.79879 -33.00516 -32.57342 -31.60266 -30.58939 -29.02843 -28.71976 -26.74546 -24.71103 -24.54963 -23.36304 -22.85899 -21.58356 -19.99600 -19.92111 -18.61074 -17.88510 -16.91975 -16.44621 -16.38931 -16.28901 -15.95637 -15.40338 -15.18744 -14.86072 -14.62153 -14.40340 -14.32988 -14.21017 -13.75761 -13.40990 -13.09233 -13.08089 -12.96807 -12.76924 -12.71299 -12.47865 -12.19677 -12.06658 -11.89401 -11.69346 -11.25416 -11.21837 -10.83188 -10.66539 -10.52255 -10.06973 -10.01000 -9.93664 -9.67396 -9.31767 -9.00909 -8.77060 -8.64509 -8.48678 -8.33017 -6.11432 -4.11176 0.46496 1.01636 1.71888 2.47994 2.51609 3.34114 3.34286 3.36825 3.44518 3.51089 3.61972 3.73576 4.17034 4.31246 4.43319 4.43682 4.56371 4.60238 4.81271 5.03012 5.10282 5.17972 5.18903 5.23897 5.26699 5.27952 5.30733 5.43106 5.45236 5.48228 5.58340 5.63434 5.75012 5.78025 5.93068 5.94025 5.98179 6.03390 6.19176 6.31714 6.40082 6.80518 7.07461 7.13217 7.22062 7.48948 7.82051 7.87274 7.91369 8.26746 8.98371 9.05528 9.54138 11.00826 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018768 B = 0.002411 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.546550 B =11610.603200 C =12204.194853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.075 0.925 9 C 0.007 3.993 10 C 0.523 3.477 11 O -0.538 6.538 12 N -0.632 5.632 13 C 0.110 3.890 14 C -0.082 4.082 15 C 0.141 3.859 16 N -0.460 5.460 17 C 0.079 3.921 18 C 0.598 3.402 19 O -0.533 6.533 20 N -0.604 5.604 21 C 0.138 3.862 22 C -0.166 4.166 23 C -0.176 4.176 24 C 0.128 3.872 25 C -0.112 4.112 26 C -0.075 4.075 27 C -0.109 4.109 28 C 0.151 3.849 29 H 0.263 0.737 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.113 0.887 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.223 -23.474 5.910 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.093 0.907 9 C -0.032 4.032 10 C 0.315 3.685 11 O -0.413 6.413 12 N -0.369 5.369 13 C -0.013 4.013 14 C -0.121 4.121 15 C 0.003 3.997 16 N -0.172 5.172 17 C -0.062 4.062 18 C 0.386 3.614 19 O -0.409 6.409 20 N -0.338 5.338 21 C 0.015 3.985 22 C -0.184 4.184 23 C -0.194 4.194 24 C 0.006 3.994 25 C -0.133 4.133 26 C -0.101 4.101 27 C -0.112 4.112 28 C 0.027 3.973 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.166 0.834 43 H 0.167 0.833 44 H 0.131 0.869 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.243 -23.766 6.408 24.616 hybrid contribution -0.391 1.199 -0.220 1.280 sum -0.148 -22.567 6.188 23.400 Atomic orbital electron populations 1.69936 1.06030 1.27128 1.50893 1.24998 0.94927 0.99497 0.95082 0.86479 0.79401 0.82222 0.78899 1.20083 1.21338 1.20103 1.21119 0.94229 0.89064 1.50488 0.90723 1.19267 0.94151 0.90463 0.99306 1.22054 0.91067 0.82654 0.72700 1.90538 1.17987 1.83706 1.49047 1.48404 1.05477 1.06290 1.76698 1.21471 0.96675 0.87720 0.95469 1.20763 0.89748 1.01762 0.99780 1.20962 0.96344 0.90289 0.92109 1.67568 1.20581 1.16148 1.12903 1.20685 0.89756 0.97143 0.98585 1.17399 0.83265 0.80822 0.79899 1.90794 1.20010 1.68358 1.61718 1.47908 1.07276 1.33699 1.44888 1.20896 0.78458 0.98986 1.00133 1.23504 1.00169 0.96868 0.97882 1.23247 0.93918 1.00937 1.01326 1.20748 0.96298 0.89095 0.93237 1.21992 1.00719 0.94729 0.95880 1.21572 0.96233 0.96264 0.96063 1.21055 0.93834 0.97898 0.98437 1.20401 0.83334 0.96708 0.96882 0.92779 0.93462 0.93336 0.91485 0.88028 0.88927 0.89193 0.89456 0.89360 0.83596 0.83684 0.90316 0.90325 0.83352 0.83310 0.86893 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.61 13.29 55.43 0.74 -24.88 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.37 8.92 -34.44 -0.31 -14.68 16 8 H 0.07 2.19 6.75 -52.49 -0.35 1.84 16 9 C 0.01 0.17 3.88 -29.03 -0.11 0.06 16 10 C 0.52 11.30 7.71 -10.99 -0.08 11.22 16 11 O -0.54 -13.30 14.94 5.56 0.08 -13.21 16 12 N -0.63 -10.30 2.94 -174.63 -0.51 -10.81 16 13 C 0.11 1.45 6.43 -3.76 -0.02 1.42 16 14 C -0.08 -0.95 6.09 -28.00 -0.17 -1.12 16 15 C 0.14 1.77 6.65 -82.41 -0.55 1.23 16 16 N -0.46 -5.74 6.93 -6.08 -0.04 -5.78 16 17 C 0.08 1.01 6.73 -83.16 -0.56 0.45 16 18 C 0.60 8.05 7.88 -12.18 -0.10 7.95 16 19 O -0.53 -8.34 16.75 5.35 0.09 -8.25 16 20 N -0.60 -6.80 3.37 -176.77 -0.60 -7.40 16 21 C 0.14 1.27 5.48 -4.99 -0.03 1.24 16 22 C -0.17 -1.13 10.87 -35.91 -0.39 -1.52 16 23 C -0.18 -1.16 10.87 -35.91 -0.39 -1.55 16 24 C 0.13 1.14 7.00 -4.98 -0.03 1.11 16 25 C -0.11 -1.32 9.64 -39.13 -0.38 -1.69 16 26 C -0.08 -0.82 9.75 -39.21 -0.38 -1.20 16 27 C -0.11 -1.36 5.82 -104.55 -0.61 -1.97 16 28 C 0.15 2.01 6.07 -5.24 -0.03 1.98 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 30 H 0.05 1.16 7.57 -51.93 -0.39 0.77 16 31 H 0.05 1.17 8.12 -51.93 -0.42 0.75 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.46 7.07 -51.93 -0.37 1.09 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.09 0.82 7.60 -51.92 -0.39 0.42 16 37 H 0.09 0.89 7.57 -51.93 -0.39 0.49 16 38 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.15 0.60 8.06 -52.49 -0.42 0.17 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.15 1.58 7.66 -52.48 -0.40 1.18 16 43 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.11 1.61 6.20 -51.93 -0.32 1.29 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -34.08 374.22 -9.86 -43.94 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.99 Total: -0.35 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -4.24 Total: 4.41 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.42 Total: -48.86 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.17 Total: -21.46 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.08 -9.86 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269025197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.861 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds