Wall clock time and date at job start Sat Apr 11 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 O 1.21277 * 120.00023 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99464 * 179.97438 * 10 9 7 13 13 C 1.47230 * 121.34309 * 179.97438 * 12 10 9 14 14 C 1.52769 * 107.97145 * 115.65186 * 13 12 10 15 15 C 1.50713 * 110.84481 * 47.72439 * 14 13 12 16 16 N 1.32417 * 117.36341 * 159.78990 * 15 14 13 17 17 C 1.32344 * 122.38658 * 179.49203 * 16 15 14 18 18 C 1.48175 * 119.77563 * 179.97438 * 17 16 15 19 19 O 1.21513 * 119.99856 * 180.02562 * 18 17 16 20 20 N 1.34778 * 119.99790 * 359.97438 * 18 17 16 21 21 C 1.46980 * 127.25507 * 359.68455 * 20 18 17 22 22 C 1.50587 * 107.13625 * 179.91562 * 21 20 18 23 23 C 1.30400 * 110.11809 * 0.36824 * 22 21 20 24 24 C 1.46982 * 127.25048 * 180.02562 * 20 18 17 25 25 C 1.39314 * 120.44674 * 359.94688 * 17 16 15 26 26 C 1.38383 * 118.68480 * 0.24146 * 25 17 16 27 27 C 1.38027 * 122.58425 * 339.67779 * 15 14 13 28 28 C 1.46712 * 121.35260 * 359.71486 * 12 10 9 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.75793 * 235.26868 * 13 12 10 33 33 H 1.08993 * 109.76126 * 356.02705 * 13 12 10 34 34 H 1.09006 * 109.20100 * 168.07405 * 14 13 12 35 35 H 1.08998 * 109.20415 * 287.37022 * 14 13 12 36 36 H 1.09008 * 109.90374 * 299.41407 * 21 20 18 37 37 H 1.08996 * 109.90928 * 60.65870 * 21 20 18 38 38 H 1.07995 * 124.94331 * 180.14689 * 22 21 20 39 39 H 1.07992 * 124.94035 * 179.79588 * 23 22 21 40 40 H 1.08998 * 109.90509 * 299.33710 * 24 20 18 41 41 H 1.09003 * 109.90750 * 60.40913 * 24 20 18 42 42 H 1.08005 * 120.66305 * 180.26660 * 25 17 16 43 43 H 1.07998 * 120.53693 * 180.02562 * 26 25 17 44 44 H 1.09004 * 109.44053 * 344.34134 * 28 12 10 45 45 H 1.09001 * 109.44228 * 104.23295 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 8 3.4226 -3.4231 -0.0097 12 7 1.7808 -4.9153 -0.0155 13 6 2.7110 -6.0565 -0.0211 14 6 2.5220 -6.8250 1.2857 15 6 1.0598 -7.0688 1.5578 16 7 0.7516 -8.0443 2.3985 17 6 -0.4992 -8.3376 2.7161 18 6 -0.7782 -9.4423 3.6634 19 8 -1.9252 -9.7153 3.9576 20 7 0.2402 -10.1448 4.1981 21 6 1.6768 -9.9578 3.9504 22 6 2.4069 -10.9817 4.7788 23 6 1.5546 -11.7115 5.4432 24 6 0.1477 -11.2640 5.1463 25 6 -1.5554 -7.6143 2.1663 26 6 -1.2692 -6.5903 1.2806 27 6 0.0596 -6.3201 0.9711 28 6 0.3451 -5.2172 -0.0102 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.4901 -6.7078 -0.8669 33 1 3.7369 -5.6954 -0.0913 34 1 3.0383 -7.7825 1.2164 35 1 2.9480 -6.2474 2.1060 36 1 1.8940 -10.1099 2.8930 37 1 1.9782 -8.9550 4.2530 38 1 3.4800 -11.0973 4.8145 39 1 1.8193 -12.5192 6.1093 40 1 -0.3379 -10.9334 6.0645 41 1 -0.4187 -12.0820 4.7010 42 1 -2.5773 -7.8479 2.4264 43 1 -2.0648 -6.0101 0.8370 44 1 -0.2122 -4.3249 0.2752 45 1 0.0372 -5.5334 -1.0069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269025197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:53 Heat of formation + Delta-G solvation = -13.868716 kcal Electronic energy + Delta-G solvation = -28933.084866 eV Core-core repulsion = 24915.571129 eV Total energy + Delta-G solvation = -4017.513737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.18910 -41.15194 -40.22876 -38.86159 -37.28354 -35.17877 -34.66238 -33.59549 -32.59102 -31.78204 -30.49868 -29.71502 -27.84060 -26.18825 -25.47272 -24.79183 -23.85703 -22.73016 -20.96620 -20.59925 -19.89062 -18.81362 -18.64818 -17.85745 -17.55556 -17.27457 -16.98570 -16.83573 -16.61761 -16.12566 -15.80912 -15.60426 -15.32185 -15.16985 -14.87989 -14.57272 -14.30735 -14.21092 -14.02859 -13.86781 -13.77071 -13.48023 -13.35095 -13.31208 -13.10613 -12.95638 -12.75709 -12.56092 -12.34780 -12.21263 -12.00541 -11.57211 -11.41510 -10.89146 -10.75123 -10.65609 -10.61177 -10.47358 -9.99129 -9.66807 -9.42080 -8.24557 -6.31084 -0.51914 0.09233 1.20315 1.41440 1.43337 1.48131 1.51836 1.66616 1.82878 2.04421 2.43919 2.64773 2.77193 3.11228 3.35649 3.51365 3.62246 3.68341 3.76882 3.87291 4.00413 4.19585 4.24472 4.31119 4.33368 4.42815 4.46734 4.47253 4.63609 4.68842 4.69412 4.76019 4.86560 4.87360 4.91401 5.00534 5.04006 5.08979 5.18979 5.26591 5.39763 5.45834 5.54850 5.75629 5.79166 6.04508 6.23381 6.47168 6.53854 6.81369 6.89224 7.33377 7.43398 8.86997 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018768 B = 0.002411 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.546550 B =11610.603200 C =12204.194853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.055 0.945 9 C 0.013 3.987 10 C 0.525 3.475 11 O -0.578 6.578 12 N -0.623 5.623 13 C 0.109 3.891 14 C -0.073 4.073 15 C 0.130 3.870 16 N -0.457 5.457 17 C 0.065 3.935 18 C 0.590 3.410 19 O -0.565 6.565 20 N -0.607 5.607 21 C 0.134 3.866 22 C -0.166 4.166 23 C -0.168 4.168 24 C 0.117 3.883 25 C -0.115 4.115 26 C -0.066 4.066 27 C -0.117 4.117 28 C 0.150 3.850 29 H 0.267 0.733 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.174 0.826 39 H 0.176 0.824 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.157 0.843 43 H 0.176 0.824 44 H 0.102 0.898 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 -24.802 5.967 25.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.073 0.927 9 C -0.026 4.026 10 C 0.317 3.683 11 O -0.457 6.457 12 N -0.357 5.357 13 C -0.013 4.013 14 C -0.111 4.111 15 C -0.008 4.008 16 N -0.169 5.169 17 C -0.075 4.075 18 C 0.378 3.622 19 O -0.444 6.444 20 N -0.339 5.339 21 C 0.012 3.988 22 C -0.184 4.184 23 C -0.185 4.185 24 C -0.005 4.005 25 C -0.136 4.136 26 C -0.091 4.091 27 C -0.120 4.120 28 C 0.027 3.973 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.140 0.860 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.191 0.809 39 H 0.193 0.807 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.175 0.825 43 H 0.193 0.807 44 H 0.120 0.880 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.636 -25.154 6.473 25.981 hybrid contribution -0.570 1.520 -0.215 1.638 sum 0.066 -23.634 6.258 24.449 Atomic orbital electron populations 1.70003 1.06983 1.28103 1.51041 1.25731 0.95834 1.02534 0.94539 0.85575 0.78431 0.78615 0.78876 1.19697 1.20027 1.19946 1.21357 0.93691 0.91320 1.51257 0.92722 1.19063 0.94232 0.90644 0.98699 1.21448 0.89819 0.84010 0.73064 1.90513 1.19078 1.84732 1.51357 1.48236 1.07504 1.05427 1.74547 1.21702 0.95264 0.86751 0.97581 1.20685 0.89540 1.02644 0.98234 1.21131 0.96792 0.90509 0.92348 1.67564 1.20407 1.16122 1.12839 1.20817 0.90313 0.97437 0.98916 1.17554 0.83317 0.81167 0.80127 1.90763 1.21186 1.69428 1.63038 1.48071 1.07824 1.33560 1.44398 1.20989 0.77561 0.99502 1.00720 1.23644 1.01376 0.95997 0.97419 1.23423 0.92010 1.01530 1.01579 1.20980 0.98316 0.88492 0.92670 1.22155 1.00950 0.94675 0.95777 1.21823 0.96338 0.95765 0.95219 1.21022 0.94579 0.97713 0.98669 1.20562 0.81205 0.96738 0.98811 0.92409 0.94215 0.93572 0.88475 0.89321 0.86042 0.90500 0.89577 0.90378 0.80895 0.80698 0.90605 0.90219 0.82535 0.80653 0.88000 0.87013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.50 13.29 21.45 0.28 -52.21 16 2 C 0.01 0.71 5.46 84.66 0.46 1.17 16 3 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.54 -30.94 8.92 25.60 0.23 -30.71 16 8 H 0.05 3.31 6.75 -2.91 -0.02 3.29 16 9 C 0.01 0.64 3.88 29.10 0.11 0.75 16 10 C 0.53 23.02 7.71 87.66 0.68 23.70 16 11 O -0.58 -29.28 14.94 -3.02 -0.05 -29.33 16 12 N -0.62 -19.84 2.94 -824.81 -2.43 -22.26 16 13 C 0.11 2.71 6.43 86.16 0.55 3.26 16 14 C -0.07 -1.57 6.09 29.78 0.18 -1.38 16 15 C 0.13 3.09 6.65 42.42 0.28 3.38 16 16 N -0.46 -10.93 6.93 -173.14 -1.20 -12.13 16 17 C 0.07 1.64 6.73 41.97 0.28 1.93 16 18 C 0.59 15.89 7.88 86.88 0.68 16.58 16 19 O -0.56 -17.94 16.75 -3.76 -0.06 -18.00 16 20 N -0.61 -13.36 3.37 -831.46 -2.80 -16.17 16 21 C 0.13 2.32 5.48 85.51 0.47 2.79 16 22 C -0.17 -1.87 10.87 26.23 0.29 -1.58 16 23 C -0.17 -1.79 10.87 26.23 0.29 -1.51 16 24 C 0.12 1.98 7.00 85.51 0.60 2.58 16 25 C -0.11 -2.57 9.64 22.56 0.22 -2.35 16 26 C -0.07 -1.32 9.75 22.51 0.22 -1.10 16 27 C -0.12 -2.71 5.82 -19.82 -0.12 -2.83 16 28 C 0.15 3.77 6.07 85.49 0.52 4.29 16 29 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 30 H 0.04 2.00 7.57 -2.38 -0.02 1.98 16 31 H 0.05 2.27 8.12 -2.39 -0.02 2.25 16 32 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.09 2.49 7.07 -2.39 -0.02 2.47 16 34 H 0.12 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.09 1.50 7.60 -2.38 -0.02 1.48 16 37 H 0.08 1.51 7.57 -2.39 -0.02 1.50 16 38 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 39 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.16 3.22 7.66 -2.91 -0.02 3.20 16 43 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 44 H 0.10 2.84 6.20 -2.38 -0.01 2.82 16 45 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -75.00 374.22 2.73 -72.27 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.02 Total: 12.31 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 5.94 Total: 18.95 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -6.14 Total: -102.77 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: -0.11 Total: -47.33 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -75.00 2.73 -72.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269025197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.400 kcal (2) G-P(sol) polarization free energy of solvation -75.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds