Wall clock time and date at job start Sat Apr 11 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99865 * 2 1 4 4 H 1.48497 * 109.47023 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47192 * 300.00286 * 3 2 1 6 6 H 1.48502 * 109.47430 * 60.00478 * 3 2 1 7 7 C 1.37877 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99614 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00070 * 359.97438 * 7 2 1 10 10 C 1.53499 * 114.20354 * 180.02562 * 9 7 2 11 11 N 1.47073 * 87.98183 * 220.34830 * 10 9 7 12 12 C 1.34774 * 136.05259 * 207.08653 * 11 10 9 13 13 O 1.21278 * 120.00476 * 355.31008 * 12 11 10 14 14 C 1.50705 * 119.99586 * 175.30922 * 12 11 10 15 15 C 1.53063 * 119.24506 * 171.51856 * 14 12 11 16 16 C 1.54000 * 121.22723 * 100.00935 * 14 12 11 17 17 H 1.08998 * 121.76022 * 0.35645 * 16 14 12 18 18 C 1.54576 * 105.00814 * 222.62793 * 16 14 12 19 19 C 1.54937 * 102.86155 * 21.95943 * 18 16 14 20 20 N 1.47523 * 117.37084 * 325.44948 * 14 12 11 21 21 C 1.34778 * 127.04800 * 295.06369 * 20 14 12 22 22 O 1.21516 * 119.99838 * 174.70301 * 21 20 14 23 23 C 1.48166 * 119.99708 * 354.70867 * 21 20 14 24 24 C 1.39315 * 119.72134 * 183.41202 * 23 21 20 25 25 C 1.38587 * 119.05714 * 179.76547 * 24 23 21 26 26 C 1.38624 * 118.48921 * 0.50483 * 25 24 23 27 27 C 1.38553 * 119.35377 * 359.73843 * 26 25 24 28 28 N 1.31530 * 120.90219 * 0.02562 * 27 26 25 29 29 C 1.47063 * 87.88573 * 27.34287 * 11 10 9 30 30 H 0.97009 * 120.00234 * 359.97438 * 1 2 3 31 31 H 1.08998 * 113.27889 * 313.07188 * 9 7 2 32 32 H 1.09000 * 113.46489 * 105.57112 * 10 9 7 33 33 H 1.08996 * 113.51998 * 335.13420 * 10 9 7 34 34 H 1.08998 * 117.45933 * 355.63379 * 15 14 12 35 35 H 1.09003 * 117.45772 * 140.40840 * 15 14 12 36 36 H 1.09001 * 110.73470 * 263.61343 * 18 16 14 37 37 H 1.08997 * 110.73884 * 140.30295 * 18 16 14 38 38 H 1.09009 * 110.66342 * 204.12444 * 19 18 16 39 39 H 1.08998 * 110.66267 * 81.01511 * 19 18 16 40 40 H 1.07997 * 120.47034 * 0.02562 * 24 23 21 41 41 H 1.08001 * 120.75226 * 180.24117 * 25 24 23 42 42 H 1.08008 * 120.32465 * 179.77071 * 26 25 24 43 43 H 1.08003 * 119.55035 * 179.97438 * 27 26 25 44 44 H 1.09001 * 113.46991 * 87.43896 * 29 11 10 45 45 H 1.08995 * 113.46644 * 217.87800 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.1488 -3.7442 -0.0005 11 7 1.2099 -4.3574 -0.9521 12 6 0.8354 -5.6113 -1.2744 13 8 1.3902 -6.5604 -0.7623 14 6 -0.2728 -5.8340 -2.2711 15 6 -0.5538 -7.2527 -2.7723 16 6 0.0324 -6.1903 -3.7380 17 1 1.0542 -6.2984 -4.1015 18 6 -0.9505 -5.3355 -4.5703 19 6 -1.3151 -4.1850 -3.5986 20 7 -1.3810 -4.8603 -2.2820 21 6 -2.2710 -4.6320 -1.2960 22 8 -3.0772 -3.7290 -1.4024 23 6 -2.2663 -5.4820 -0.0824 24 6 -3.2337 -5.2872 0.9010 25 6 -3.2194 -6.0932 2.0282 26 6 -2.2314 -7.0594 2.1378 27 6 -1.2976 -7.1940 1.1231 28 7 -1.3372 -6.4186 0.0614 29 6 0.8643 -3.0005 -1.4017 30 1 -0.4851 0.8401 0.0004 31 1 0.4437 -2.5305 0.7312 32 1 2.1849 -4.2532 0.9626 33 1 3.1387 -3.5667 -0.4208 34 1 0.1152 -8.0456 -2.4380 35 1 -1.5965 -7.5423 -2.9029 36 1 -1.8363 -5.9132 -4.8342 37 1 -0.4623 -4.9460 -5.4636 38 1 -2.2820 -3.7539 -3.8586 39 1 -0.5389 -3.4198 -3.6000 40 1 -3.9866 -4.5217 0.7846 41 1 -3.9587 -5.9686 2.8057 42 1 -2.1902 -7.7013 3.0054 43 1 -0.5262 -7.9455 1.2053 44 1 1.5154 -2.6259 -2.1916 45 1 -0.1936 -2.8759 -1.6323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269345541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:35 Heat of formation + Delta-G solvation = 64.311382 kcal Electronic energy + Delta-G solvation = -31341.733230 eV Core-core repulsion = 27327.609636 eV Total energy + Delta-G solvation = -4014.123594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97323 -39.82194 -38.73802 -37.90088 -36.63103 -32.93998 -32.63176 -32.31016 -31.47449 -30.36518 -29.08679 -25.62089 -25.08898 -24.85542 -23.45740 -23.06884 -22.89819 -21.17296 -20.36454 -19.64107 -18.44896 -17.22375 -16.78740 -16.58915 -16.13661 -15.98317 -15.45450 -15.24957 -14.86233 -14.66420 -14.58899 -14.24781 -14.06020 -13.56312 -13.47194 -13.20611 -13.03341 -12.69079 -12.53076 -12.35955 -12.12826 -12.00613 -11.76063 -11.49122 -11.29252 -11.03695 -10.96149 -10.78509 -10.54277 -10.40863 -10.24913 -10.00591 -9.88396 -9.55828 -9.26583 -9.13510 -9.12477 -8.97715 -8.56620 -8.37200 -7.77361 -6.12568 -4.19562 0.75279 1.31076 2.70416 2.89667 3.09413 3.24614 3.33409 3.36558 3.55671 3.83442 4.01243 4.18247 4.36198 4.53682 4.61414 4.81441 4.86047 4.98337 5.02864 5.09624 5.13408 5.15465 5.21145 5.28704 5.42071 5.67654 5.73234 5.78025 5.81361 5.85667 5.92515 6.04248 6.10153 6.13069 6.17204 6.22605 6.30422 6.32623 6.46527 6.60366 6.64905 6.75355 6.89198 7.56757 7.58637 7.83171 7.87189 8.22134 8.29688 8.60723 8.84154 8.90628 9.47007 10.96359 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010615 B = 0.004749 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.223791 B = 5894.070138 C = 6584.074485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.103 3.897 11 N -0.638 5.638 12 C 0.589 3.411 13 O -0.552 6.552 14 C 0.091 3.909 15 C -0.106 4.106 16 C -0.156 4.156 17 H 0.125 0.875 18 C -0.104 4.104 19 C 0.103 3.897 20 N -0.571 5.571 21 C 0.596 3.404 22 O -0.522 6.522 23 C 0.082 3.918 24 C -0.112 4.112 25 C -0.085 4.085 26 C -0.154 4.154 27 C 0.105 3.895 28 N -0.433 5.433 29 C 0.099 3.901 30 H 0.263 0.737 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.160 0.840 44 H 0.070 0.930 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.509 -14.144 -3.951 15.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.018 3.982 10 C -0.019 4.019 11 N -0.371 5.371 12 C 0.377 3.623 13 O -0.431 6.431 14 C 0.001 3.999 15 C -0.145 4.145 16 C -0.175 4.175 17 H 0.143 0.857 18 C -0.142 4.142 19 C -0.018 4.018 20 N -0.304 5.304 21 C 0.384 3.616 22 O -0.397 6.397 23 C -0.056 4.056 24 C -0.133 4.133 25 C -0.111 4.111 26 C -0.174 4.174 27 C -0.055 4.055 28 N -0.143 5.143 29 C -0.024 4.024 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.163 0.837 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.177 0.823 44 H 0.088 0.912 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.348 -14.254 -4.387 15.844 hybrid contribution -0.142 1.127 0.776 1.376 sum -5.490 -13.127 -3.611 14.680 Atomic orbital electron populations 1.69989 1.05977 1.26960 1.48693 1.25040 0.94826 0.99320 0.94325 0.86517 0.80167 0.83514 0.77709 1.19592 1.20899 1.20903 1.20920 0.92934 0.89545 1.52306 0.91868 1.20335 0.94511 0.91170 0.92137 1.23309 0.94302 0.93183 0.91131 1.49826 1.42462 1.04810 1.40011 1.18453 0.81765 0.81199 0.80933 1.90573 1.57356 1.40954 1.54195 1.21375 0.88990 0.93136 0.96433 1.23568 1.01998 0.91302 0.97610 1.24215 1.01373 1.02171 0.89736 0.85725 1.22387 0.98626 0.95564 0.97588 1.22798 1.03342 0.95372 0.80294 1.47891 1.28581 1.37752 1.16171 1.17508 0.79866 0.82819 0.81378 1.90812 1.39393 1.30734 1.78743 1.21037 0.93616 0.95566 0.95395 1.22092 0.98936 0.99114 0.93149 1.21553 0.98159 0.94207 0.97172 1.22370 0.95788 0.99015 1.00254 1.22813 0.97040 0.96836 0.88792 1.67730 1.20052 1.02952 1.23607 1.23659 0.99846 0.77039 1.01841 0.92688 0.91913 0.92893 0.91040 0.86676 0.88623 0.90433 0.89164 0.89135 0.89837 0.83672 0.84315 0.84546 0.82297 0.91221 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.95 13.26 55.43 0.74 -24.21 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -13.61 8.82 -34.44 -0.30 -13.91 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.04 0.93 3.80 -91.12 -0.35 0.58 16 10 C 0.10 2.24 8.18 -8.50 -0.07 2.17 16 11 N -0.64 -13.51 3.68 -185.04 -0.68 -14.19 16 12 C 0.59 11.66 6.14 -10.98 -0.07 11.59 16 13 O -0.55 -11.81 16.93 5.56 0.09 -11.71 16 14 C 0.09 1.48 1.07 -131.86 -0.14 1.33 16 15 C -0.11 -1.41 9.54 -25.60 -0.24 -1.65 16 16 C -0.16 -1.96 7.01 -88.17 -0.62 -2.58 16 17 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 18 C -0.10 -1.12 6.87 -24.88 -0.17 -1.29 16 19 C 0.10 1.49 6.52 -2.13 -0.01 1.47 16 20 N -0.57 -9.72 1.84 -157.26 -0.29 -10.01 16 21 C 0.60 11.43 7.47 -12.18 -0.09 11.34 16 22 O -0.52 -11.20 16.58 5.35 0.09 -11.11 16 23 C 0.08 1.44 6.72 -83.01 -0.56 0.89 16 24 C -0.11 -1.69 9.63 -39.05 -0.38 -2.07 16 25 C -0.08 -1.01 10.17 -39.31 -0.40 -1.41 16 26 C -0.15 -1.76 10.11 -39.32 -0.40 -2.15 16 27 C 0.10 1.46 11.18 -17.56 -0.20 1.27 16 28 N -0.43 -7.28 5.70 -9.80 -0.06 -7.34 16 29 C 0.10 2.20 6.92 -8.37 -0.06 2.15 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 32 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 34 H 0.12 1.53 7.86 -51.93 -0.41 1.12 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.27 7.90 -51.92 -0.41 0.86 16 39 H 0.08 1.28 6.73 -51.93 -0.35 0.93 16 40 H 0.15 2.14 7.65 -52.49 -0.40 1.74 16 41 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.16 1.98 8.06 -52.48 -0.42 1.55 16 44 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 45 H 0.06 1.44 5.50 -51.93 -0.29 1.16 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -32.67 375.41 -9.66 -42.33 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.04 Total: 5.59 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -4.15 Total: 9.47 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.29 Total: -55.74 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.18 Total: -22.83 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.67 -9.66 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269345541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.641 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds