Wall clock time and date at job start Sat Apr 11 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00233 * 2 1 4 4 H 1.48502 * 109.47553 * 240.00328 * 3 2 1 5 5 H 1.48503 * 109.46632 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47080 * 119.99914 * 3 2 1 7 7 C 1.37876 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00138 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99956 * 359.97438 * 7 2 1 10 10 C 1.53504 * 114.20539 * 180.02562 * 9 7 2 11 11 N 1.47068 * 87.98565 * 220.34695 * 10 9 7 12 12 C 1.34778 * 136.05695 * 207.08008 * 11 10 9 13 13 O 1.21276 * 119.99808 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.99862 * 180.02562 * 12 11 10 15 15 C 1.54407 * 129.01323 * 180.02562 * 14 12 11 16 16 C 1.54411 * 78.89486 * 180.64719 * 15 14 12 17 17 N 1.46501 * 129.01283 * 180.64231 * 16 15 14 18 18 C 1.34780 * 119.99775 * 180.02562 * 17 16 15 19 19 O 1.21506 * 120.00220 * 0.02562 * 18 17 16 20 20 C 1.48175 * 119.99946 * 180.02562 * 18 17 16 21 21 C 1.39302 * 119.72217 * 179.97438 * 20 18 17 22 22 C 1.38596 * 119.05879 * 179.97438 * 21 20 18 23 23 C 1.38630 * 118.48552 * 0.02562 * 22 21 20 24 24 C 1.38558 * 119.35539 * 0.25409 * 23 22 21 25 25 N 1.31533 * 120.89633 * 359.44607 * 24 23 22 26 26 C 1.54896 * 84.49303 * 43.15709 * 16 15 14 27 27 C 1.54889 * 84.49408 * 318.13693 * 16 15 14 28 28 C 1.47072 * 87.88266 * 27.34578 * 11 10 9 29 29 H 0.97000 * 119.99808 * 359.97438 * 1 2 3 30 30 H 1.08992 * 113.41635 * 313.20447 * 9 7 2 31 31 H 1.09000 * 113.46305 * 105.56684 * 10 9 7 32 32 H 1.09002 * 113.47035 * 335.13438 * 10 9 7 33 33 H 1.09001 * 114.93406 * 68.15887 * 15 14 12 34 34 H 1.08999 * 114.99273 * 293.13854 * 15 14 12 35 35 H 0.97001 * 120.00408 * 0.02562 * 17 16 15 36 36 H 1.07999 * 120.47505 * 0.02670 * 21 20 18 37 37 H 1.07999 * 120.75338 * 180.02562 * 22 21 20 38 38 H 1.08002 * 120.31909 * 179.97438 * 23 22 21 39 39 H 1.07994 * 119.54956 * 179.72801 * 24 23 22 40 40 H 1.08996 * 114.97689 * 69.38786 * 26 16 15 41 41 H 1.08994 * 114.97550 * 204.56697 * 26 16 15 42 42 H 1.09005 * 114.97416 * 155.43557 * 27 16 15 43 43 H 1.09003 * 114.97465 * 290.60511 * 27 16 15 44 44 H 1.08998 * 113.46661 * 87.43753 * 28 11 10 45 45 H 1.08999 * 113.46238 * 217.87455 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.1488 -3.7443 -0.0005 11 7 1.2099 -4.3575 -0.9521 12 6 0.8355 -5.6114 -1.2744 13 8 1.3301 -6.5584 -0.7005 14 6 -0.1978 -5.8367 -2.3480 15 6 -0.7746 -7.1674 -2.8780 16 6 -1.5295 -6.1455 -3.7555 17 7 -2.5323 -6.3863 -4.7960 18 6 -3.0804 -5.3475 -5.4571 19 8 -2.7425 -4.2113 -5.1904 20 6 -4.0950 -5.5910 -6.5091 21 6 -4.6581 -4.5131 -7.1883 22 6 -5.6055 -4.7567 -8.1701 23 6 -5.9572 -6.0706 -8.4381 24 6 -5.3605 -7.0936 -7.7190 25 7 -4.4597 -6.8344 -6.7962 26 6 -0.1503 -5.4500 -3.8707 27 6 -1.6613 -5.3380 -2.4403 28 6 0.8645 -3.0005 -1.4018 29 1 -0.4850 0.8401 0.0004 30 1 0.4417 -2.5320 0.7288 31 1 2.1849 -4.2532 0.9627 32 1 3.1385 -3.5658 -0.4210 33 1 -1.3974 -7.7130 -2.1690 34 1 -0.0638 -7.7966 -3.4136 35 1 -2.8019 -7.2934 -5.0092 36 1 -4.3601 -3.5018 -6.9539 37 1 -6.0594 -3.9415 -8.7140 38 1 -6.6926 -6.2943 -9.1968 39 1 -5.6354 -8.1181 -7.9221 40 1 0.5919 -5.9936 -4.4552 41 1 -0.1897 -4.3832 -4.0906 42 1 -1.7950 -4.2641 -2.5711 43 1 -2.3242 -5.7774 -1.6949 44 1 1.5156 -2.6260 -2.1916 45 1 -0.1935 -2.8759 -1.6324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269346336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:46 Heat of formation + Delta-G solvation = 109.055429 kcal Electronic energy + Delta-G solvation = -28526.617734 eV Core-core repulsion = 24514.434388 eV Total energy + Delta-G solvation = -4012.183346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07707 -40.79065 -39.14396 -38.66733 -36.84443 -34.14208 -32.80771 -32.65358 -31.75707 -29.37303 -26.15309 -25.76599 -25.70393 -25.28121 -24.89529 -23.98912 -23.50609 -21.51517 -20.13788 -19.04418 -18.44864 -17.78332 -17.06287 -16.88512 -16.52930 -16.16094 -15.64504 -15.41473 -15.29567 -14.75400 -14.54222 -14.44332 -14.26607 -14.07871 -13.86935 -13.77964 -13.43113 -13.23139 -12.41737 -12.35199 -12.03690 -11.81695 -11.52745 -11.41784 -11.25250 -11.13142 -10.92284 -10.81167 -10.65496 -10.43533 -10.37549 -10.37028 -10.19735 -9.91440 -9.66198 -9.61235 -9.18911 -9.14893 -9.00250 -8.55098 -7.86023 -6.14813 -4.20650 0.23306 0.75775 2.44181 2.58728 2.93529 3.27933 3.33417 3.34816 3.47881 3.49240 3.71370 4.15090 4.31343 4.35362 4.35842 4.37992 4.47110 4.52620 4.55609 4.61533 4.67755 4.94076 5.05351 5.16114 5.27786 5.52499 5.58420 5.63747 5.65292 5.70474 5.84886 5.93256 6.02354 6.07175 6.10055 6.10558 6.20239 6.28737 6.45043 6.46399 6.62500 6.72503 6.86279 7.12317 7.40889 7.57770 7.82561 7.96287 8.20786 8.49684 8.77308 8.82886 9.45951 10.94838 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012401 B = 0.002549 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.257213 B =10981.063655 C =12957.201546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.069 3.931 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.101 3.899 11 N -0.634 5.634 12 C 0.597 3.403 13 O -0.559 6.559 14 C -0.141 4.141 15 C -0.081 4.081 16 C 0.091 3.909 17 N -0.658 5.658 18 C 0.572 3.428 19 O -0.512 6.512 20 C 0.082 3.918 21 C -0.109 4.109 22 C -0.081 4.081 23 C -0.151 4.151 24 C 0.097 3.903 25 N -0.461 5.461 26 C -0.099 4.099 27 C -0.097 4.097 28 C 0.099 3.901 29 H 0.265 0.735 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.416 0.584 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.164 0.836 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.692 -12.907 -17.470 25.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.017 3.983 10 C -0.021 4.021 11 N -0.367 5.367 12 C 0.385 3.615 13 O -0.439 6.439 14 C -0.145 4.145 15 C -0.119 4.119 16 C 0.003 3.997 17 N -0.307 5.307 18 C 0.357 3.643 19 O -0.386 6.386 20 C -0.056 4.056 21 C -0.130 4.130 22 C -0.107 4.107 23 C -0.171 4.171 24 C -0.062 4.062 25 N -0.173 5.173 26 C -0.138 4.138 27 C -0.136 4.136 28 C -0.023 4.023 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.254 0.746 36 H 0.169 0.831 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.181 0.819 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.026 -13.332 -16.563 24.427 hybrid contribution -0.288 1.112 -0.890 1.453 sum -12.313 -12.220 -17.453 24.608 Atomic orbital electron populations 1.69942 1.06050 1.27251 1.48815 1.25027 0.94861 0.99374 0.94237 0.86599 0.79589 0.82701 0.78797 1.20068 1.21239 1.20067 1.20854 0.92956 0.89527 1.52311 0.91869 1.20392 0.94713 0.91074 0.92161 1.23390 0.94311 0.93098 0.91265 1.49889 1.42235 1.04723 1.39803 1.17771 0.81117 0.81353 0.81249 1.90646 1.57657 1.41173 1.54417 1.23598 0.96473 0.98815 0.95640 1.23964 0.97025 0.94816 0.96126 1.22878 0.89411 0.98707 0.88707 1.44405 1.40167 1.10077 1.36079 1.17895 0.80701 0.84912 0.80807 1.90858 1.60899 1.21666 1.65138 1.21096 0.97635 0.89652 0.97254 1.22205 0.95158 1.01093 0.94532 1.21685 0.95487 0.97526 0.95969 1.22413 1.00522 0.93707 1.00485 1.22811 0.91966 1.00176 0.91281 1.67544 1.12607 1.21699 1.15436 1.24828 0.94564 1.01982 0.92434 1.24369 0.93135 1.01557 0.94565 1.23712 1.00038 0.76498 1.02069 0.92557 0.91283 0.92310 0.90722 0.89868 0.89877 0.74649 0.83089 0.83861 0.84118 0.81922 0.90467 0.89109 0.88895 0.90474 0.90755 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.41 13.26 55.43 0.74 -23.67 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.52 -13.30 8.82 -34.44 -0.30 -13.60 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.04 0.85 3.80 -91.12 -0.35 0.50 16 10 C 0.10 2.14 8.17 -8.50 -0.07 2.07 16 11 N -0.63 -13.32 3.69 -185.04 -0.68 -14.00 16 12 C 0.60 12.18 8.19 -10.99 -0.09 12.10 16 13 O -0.56 -12.82 17.87 5.56 0.10 -12.72 16 14 C -0.14 -2.33 3.33 -171.00 -0.57 -2.90 16 15 C -0.08 -1.07 7.78 -26.72 -0.21 -1.28 16 16 C 0.09 1.23 3.79 -148.42 -0.56 0.67 16 17 N -0.66 -7.84 5.70 -64.84 -0.37 -8.21 16 18 C 0.57 7.61 7.81 -12.18 -0.10 7.51 16 19 O -0.51 -8.49 16.20 5.36 0.09 -8.40 16 20 C 0.08 0.89 6.75 -83.01 -0.56 0.33 16 21 C -0.11 -1.00 9.63 -39.05 -0.38 -1.38 16 22 C -0.08 -0.50 10.17 -39.30 -0.40 -0.90 16 23 C -0.15 -0.78 10.11 -39.32 -0.40 -1.17 16 24 C 0.10 0.62 11.18 -17.56 -0.20 0.42 16 25 N -0.46 -4.28 9.54 -9.80 -0.09 -4.38 16 26 C -0.10 -1.48 7.88 -24.71 -0.19 -1.67 16 27 C -0.10 -1.51 7.77 -25.98 -0.20 -1.71 16 28 C 0.10 2.15 7.99 -8.37 -0.07 2.09 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.07 1.79 8.11 -51.93 -0.42 1.37 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 33 H 0.08 1.02 7.94 -51.93 -0.41 0.61 16 34 H 0.08 1.00 7.91 -51.93 -0.41 0.59 16 35 H 0.42 4.03 8.16 -40.82 -0.33 3.69 16 36 H 0.15 1.40 7.64 -52.49 -0.40 1.00 16 37 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 38 H 0.14 0.30 8.06 -52.49 -0.42 -0.13 16 39 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.08 1.05 7.91 -51.93 -0.41 0.64 16 41 H 0.09 1.49 7.97 -51.93 -0.41 1.08 16 42 H 0.09 1.61 7.66 -51.93 -0.40 1.21 16 43 H 0.08 1.12 7.93 -51.93 -0.41 0.71 16 44 H 0.07 1.60 8.10 -51.93 -0.42 1.17 16 45 H 0.06 1.36 7.83 -51.93 -0.41 0.95 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -32.08 389.45 -10.21 -42.29 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.10 Total: 5.14 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -4.73 Total: 2.79 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.41 Total: -50.26 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.19 Total: -21.11 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.08 -10.21 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269346336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.342 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds