Wall clock time and date at job start Sat Apr 11 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00233 * 2 1 4 4 H 1.48502 * 109.47553 * 240.00328 * 3 2 1 5 5 H 1.48503 * 109.46632 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47080 * 119.99914 * 3 2 1 7 7 C 1.37876 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00138 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99956 * 359.97438 * 7 2 1 10 10 C 1.53504 * 114.20539 * 180.02562 * 9 7 2 11 11 N 1.47068 * 87.98565 * 220.34695 * 10 9 7 12 12 C 1.34778 * 136.05695 * 207.08008 * 11 10 9 13 13 O 1.21276 * 119.99808 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.99862 * 180.02562 * 12 11 10 15 15 C 1.54407 * 129.01323 * 180.02562 * 14 12 11 16 16 C 1.54411 * 78.89486 * 180.64719 * 15 14 12 17 17 N 1.46501 * 129.01283 * 180.64231 * 16 15 14 18 18 C 1.34780 * 119.99775 * 180.02562 * 17 16 15 19 19 O 1.21506 * 120.00220 * 0.02562 * 18 17 16 20 20 C 1.48175 * 119.99946 * 180.02562 * 18 17 16 21 21 C 1.39302 * 119.72217 * 179.97438 * 20 18 17 22 22 C 1.38596 * 119.05879 * 179.97438 * 21 20 18 23 23 C 1.38630 * 118.48552 * 0.02562 * 22 21 20 24 24 C 1.38558 * 119.35539 * 0.25409 * 23 22 21 25 25 N 1.31533 * 120.89633 * 359.44607 * 24 23 22 26 26 C 1.54896 * 84.49303 * 43.15709 * 16 15 14 27 27 C 1.54889 * 84.49408 * 318.13693 * 16 15 14 28 28 C 1.47072 * 87.88266 * 27.34578 * 11 10 9 29 29 H 0.97000 * 119.99808 * 359.97438 * 1 2 3 30 30 H 1.08992 * 113.41635 * 313.20447 * 9 7 2 31 31 H 1.09000 * 113.46305 * 105.56684 * 10 9 7 32 32 H 1.09002 * 113.47035 * 335.13438 * 10 9 7 33 33 H 1.09001 * 114.93406 * 68.15887 * 15 14 12 34 34 H 1.08999 * 114.99273 * 293.13854 * 15 14 12 35 35 H 0.97001 * 120.00408 * 0.02562 * 17 16 15 36 36 H 1.07999 * 120.47505 * 0.02670 * 21 20 18 37 37 H 1.07999 * 120.75338 * 180.02562 * 22 21 20 38 38 H 1.08002 * 120.31909 * 179.97438 * 23 22 21 39 39 H 1.07994 * 119.54956 * 179.72801 * 24 23 22 40 40 H 1.08996 * 114.97689 * 69.38786 * 26 16 15 41 41 H 1.08994 * 114.97550 * 204.56697 * 26 16 15 42 42 H 1.09005 * 114.97416 * 155.43557 * 27 16 15 43 43 H 1.09003 * 114.97465 * 290.60511 * 27 16 15 44 44 H 1.08998 * 113.46661 * 87.43753 * 28 11 10 45 45 H 1.08999 * 113.46238 * 217.87455 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.1488 -3.7443 -0.0005 11 7 1.2099 -4.3575 -0.9521 12 6 0.8355 -5.6114 -1.2744 13 8 1.3301 -6.5584 -0.7005 14 6 -0.1978 -5.8367 -2.3480 15 6 -0.7746 -7.1674 -2.8780 16 6 -1.5295 -6.1455 -3.7555 17 7 -2.5323 -6.3863 -4.7960 18 6 -3.0804 -5.3475 -5.4571 19 8 -2.7425 -4.2113 -5.1904 20 6 -4.0950 -5.5910 -6.5091 21 6 -4.6581 -4.5131 -7.1883 22 6 -5.6055 -4.7567 -8.1701 23 6 -5.9572 -6.0706 -8.4381 24 6 -5.3605 -7.0936 -7.7190 25 7 -4.4597 -6.8344 -6.7962 26 6 -0.1503 -5.4500 -3.8707 27 6 -1.6613 -5.3380 -2.4403 28 6 0.8645 -3.0005 -1.4018 29 1 -0.4850 0.8401 0.0004 30 1 0.4417 -2.5320 0.7288 31 1 2.1849 -4.2532 0.9627 32 1 3.1385 -3.5658 -0.4210 33 1 -1.3974 -7.7130 -2.1690 34 1 -0.0638 -7.7966 -3.4136 35 1 -2.8019 -7.2934 -5.0092 36 1 -4.3601 -3.5018 -6.9539 37 1 -6.0594 -3.9415 -8.7140 38 1 -6.6926 -6.2943 -9.1968 39 1 -5.6354 -8.1181 -7.9221 40 1 0.5919 -5.9936 -4.4552 41 1 -0.1897 -4.3832 -4.0906 42 1 -1.7950 -4.2641 -2.5711 43 1 -2.3242 -5.7774 -1.6949 44 1 1.5156 -2.6260 -2.1916 45 1 -0.1935 -2.8759 -1.6324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269346336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:46 Heat of formation + Delta-G solvation = 88.169317 kcal Electronic energy + Delta-G solvation = -28527.523424 eV Core-core repulsion = 24514.434388 eV Total energy + Delta-G solvation = -4013.089036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.29415 -41.50187 -40.78747 -39.69312 -38.59150 -35.13842 -34.65794 -33.41754 -32.36370 -31.17268 -27.75045 -27.01331 -26.93026 -26.66700 -26.37338 -24.95481 -24.41058 -22.61979 -21.67093 -20.35363 -19.36054 -19.24144 -18.71640 -18.06843 -17.60669 -17.28005 -16.74816 -16.62879 -16.37048 -16.17611 -16.12676 -15.55336 -15.46954 -15.29763 -14.99615 -14.80985 -14.56897 -14.20736 -14.09810 -13.68136 -13.30550 -13.24740 -12.97618 -12.92795 -12.79529 -12.72357 -12.50925 -12.31699 -12.20525 -11.72229 -11.59454 -11.49125 -11.29649 -11.06818 -10.96710 -10.83512 -10.59335 -10.53972 -10.37491 -10.12428 -9.63244 -8.17094 -6.28905 -0.40824 0.24262 1.33482 1.47852 1.48618 1.54495 1.57019 1.58879 1.96260 2.45440 2.82436 2.93386 3.07398 3.12303 3.12921 3.27364 3.28967 3.36533 3.47721 3.81903 3.96363 4.03540 4.09155 4.22321 4.35421 4.39765 4.44808 4.49796 4.52640 4.59042 4.68274 4.70624 4.74481 4.75596 4.77079 4.81810 4.85989 4.98288 5.03676 5.06160 5.16575 5.35554 5.57045 5.62626 5.79746 6.21322 6.26349 6.74221 6.78693 6.80140 7.01733 7.08728 7.41220 8.92757 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012401 B = 0.002549 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.257213 B =10981.063655 C =12957.201546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.528 4.528 8 H 0.070 0.930 9 C 0.025 3.975 10 C 0.108 3.892 11 N -0.637 5.637 12 C 0.595 3.405 13 O -0.583 6.583 14 C -0.166 4.166 15 C -0.059 4.059 16 C 0.111 3.889 17 N -0.647 5.647 18 C 0.568 3.432 19 O -0.557 6.557 20 C 0.053 3.947 21 C -0.125 4.125 22 C -0.080 4.080 23 C -0.132 4.132 24 C 0.091 3.909 25 N -0.475 5.475 26 C -0.097 4.097 27 C -0.102 4.102 28 C 0.116 3.884 29 H 0.264 0.736 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.429 0.571 36 H 0.137 0.863 37 H 0.172 0.828 38 H 0.182 0.818 39 H 0.197 0.803 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.605 -14.593 -19.896 28.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.566 4.566 8 H 0.088 0.912 9 C 0.005 3.995 10 C -0.014 4.014 11 N -0.369 5.369 12 C 0.385 3.615 13 O -0.465 6.465 14 C -0.170 4.170 15 C -0.097 4.097 16 C 0.021 3.979 17 N -0.297 5.297 18 C 0.355 3.645 19 O -0.434 6.434 20 C -0.083 4.083 21 C -0.146 4.146 22 C -0.106 4.106 23 C -0.152 4.152 24 C -0.068 4.068 25 N -0.187 5.187 26 C -0.136 4.136 27 C -0.142 4.142 28 C -0.006 4.006 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.269 0.731 36 H 0.155 0.845 37 H 0.189 0.811 38 H 0.199 0.801 39 H 0.214 0.786 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.934 -15.056 -18.995 27.473 hybrid contribution -0.103 1.582 -0.190 1.597 sum -13.037 -13.474 -19.185 26.825 Atomic orbital electron populations 1.70072 1.07563 1.27924 1.50190 1.25817 0.95565 1.02764 0.94004 0.85575 0.78283 0.78484 0.79127 1.19245 1.21382 1.19340 1.21183 0.93423 0.90312 1.51671 0.91184 1.20270 0.94640 0.91969 0.92595 1.23281 0.94474 0.91777 0.91851 1.49892 1.42306 1.04904 1.39791 1.18300 0.81231 0.80444 0.81477 1.90619 1.58760 1.41577 1.55569 1.23526 0.95926 1.02106 0.95417 1.23894 0.96816 0.93321 0.95711 1.22534 0.88873 0.98323 0.88124 1.44328 1.39446 1.10659 1.35241 1.18424 0.80737 0.84349 0.80985 1.90832 1.62552 1.23351 1.66675 1.20742 0.98601 0.91000 0.97977 1.22269 0.96397 1.00185 0.95749 1.22054 0.94334 0.99278 0.94917 1.22890 0.99755 0.92596 0.99948 1.23497 0.90865 1.02238 0.90246 1.67493 1.13808 1.20707 1.16715 1.24818 0.96249 1.01162 0.91357 1.24378 0.92856 1.00400 0.96525 1.23399 0.99360 0.76959 1.00919 0.92697 0.94254 0.91893 0.89305 0.88328 0.87781 0.73065 0.84480 0.81076 0.80111 0.78627 0.88577 0.91398 0.91710 0.89556 0.90364 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.30 13.26 21.45 0.28 -52.02 16 2 C 0.02 1.00 5.46 84.65 0.46 1.46 16 3 Si 0.96 41.92 29.54 68.60 2.03 43.95 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.53 -27.47 8.82 25.60 0.23 -27.24 16 8 H 0.07 3.48 7.81 -2.91 -0.02 3.45 16 9 C 0.02 1.21 3.80 -11.11 -0.04 1.17 16 10 C 0.11 4.64 8.17 83.18 0.68 5.32 16 11 N -0.64 -27.35 3.69 -857.73 -3.16 -30.51 16 12 C 0.60 24.53 8.19 87.66 0.72 25.24 16 13 O -0.58 -26.67 17.87 -3.02 -0.05 -26.73 16 14 C -0.17 -5.50 3.33 -62.87 -0.21 -5.71 16 15 C -0.06 -1.46 7.78 30.60 0.24 -1.22 16 16 C 0.11 2.94 3.79 -7.15 -0.03 2.91 16 17 N -0.65 -15.17 5.70 -477.36 -2.72 -17.89 16 18 C 0.57 15.60 7.81 86.88 0.68 16.28 16 19 O -0.56 -19.72 16.20 -3.74 -0.06 -19.78 16 20 C 0.05 1.15 6.75 41.91 0.28 1.43 16 21 C -0.12 -2.28 9.63 22.61 0.22 -2.06 16 22 C -0.08 -0.80 10.17 22.45 0.23 -0.57 16 23 C -0.13 -0.83 10.11 22.44 0.23 -0.61 16 24 C 0.09 0.87 11.18 84.81 0.95 1.81 16 25 N -0.48 -8.05 9.54 -184.91 -1.76 -9.82 16 26 C -0.10 -2.91 7.88 31.91 0.25 -2.66 16 27 C -0.10 -3.28 7.77 31.08 0.24 -3.04 16 28 C 0.12 5.25 7.99 83.27 0.67 5.92 16 29 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.04 2.15 8.11 -2.39 -0.02 2.13 16 31 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.09 3.56 8.10 -2.39 -0.02 3.54 16 33 H 0.10 2.17 7.94 -2.39 -0.02 2.16 16 34 H 0.10 2.19 7.91 -2.39 -0.02 2.17 16 35 H 0.43 7.75 8.16 -92.71 -0.76 6.99 16 36 H 0.14 2.76 7.64 -2.91 -0.02 2.74 16 37 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 38 H 0.18 -0.29 8.06 -2.91 -0.02 -0.31 16 39 H 0.20 0.43 8.06 -2.91 -0.02 0.41 16 40 H 0.10 2.51 7.91 -2.39 -0.02 2.49 16 41 H 0.07 2.35 7.97 -2.39 -0.02 2.33 16 42 H 0.06 2.43 7.66 -2.38 -0.02 2.41 16 43 H 0.09 2.55 7.93 -2.39 -0.02 2.53 16 44 H 0.08 3.46 8.10 -2.39 -0.02 3.44 16 45 H 0.05 2.36 7.83 -2.39 -0.02 2.35 16 Total: -1.00 -72.35 389.45 0.60 -71.74 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.27 Total: 22.63 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 5.79 Total: 18.43 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -7.36 Total: -110.25 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -0.11 Total: -46.51 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -72.35 0.60 -71.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269346336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.913 kcal (2) G-P(sol) polarization free energy of solvation -72.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds