Wall clock time and date at job start Sat Apr 11 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99657 * 2 1 4 4 H 1.48501 * 109.47017 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47069 * 299.99534 * 3 2 1 6 6 H 1.48495 * 109.47334 * 59.99561 * 3 2 1 7 7 C 1.37867 * 120.00509 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00414 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.53498 * 114.20984 * 179.97438 * 9 7 2 11 11 N 1.47073 * 87.98594 * 139.65286 * 10 9 7 12 12 C 1.34773 * 136.05549 * 152.84095 * 11 10 9 13 13 O 1.21288 * 120.00003 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00219 * 180.02562 * 12 11 10 15 15 H 1.09009 * 115.55889 * 325.64546 * 14 12 11 16 16 C 1.53152 * 117.51591 * 111.39069 * 14 12 11 17 17 C 1.52333 * 59.88103 * 107.46714 * 16 14 12 18 18 C 1.53289 * 128.81779 * 242.12965 * 17 16 14 19 19 N 1.47718 * 85.85497 * 196.98636 * 18 17 16 20 20 C 1.34775 * 134.39079 * 204.09829 * 19 18 17 21 21 O 1.21554 * 120.00396 * 174.49878 * 20 19 18 22 22 C 1.47845 * 120.00154 * 354.49634 * 20 19 18 23 23 C 1.40022 * 120.55708 * 353.03402 * 22 20 19 24 24 C 1.38360 * 118.28658 * 179.73746 * 23 22 20 25 25 C 1.38354 * 119.30220 * 0.55453 * 24 23 22 26 26 N 1.31929 * 121.07696 * 359.70870 * 25 24 23 27 27 C 1.31689 * 121.88336 * 359.97438 * 26 25 24 28 28 C 1.47717 * 91.21429 * 24.09317 * 19 18 17 29 29 C 1.47061 * 87.88321 * 333.10482 * 11 10 9 30 30 H 0.96996 * 119.99866 * 0.02562 * 1 2 3 31 31 H 1.09005 * 113.41737 * 46.79940 * 9 7 2 32 32 H 1.09002 * 113.46327 * 24.87290 * 10 9 7 33 33 H 1.08998 * 113.47042 * 254.43886 * 10 9 7 34 34 H 1.09003 * 117.51617 * 214.92164 * 16 14 12 35 35 H 1.09001 * 117.51757 * 0.02562 * 16 14 12 36 36 H 1.09004 * 113.80918 * 311.22055 * 18 17 16 37 37 H 1.09004 * 113.80951 * 82.74574 * 18 17 16 38 38 H 1.08002 * 120.85487 * 0.02562 * 23 22 20 39 39 H 1.07998 * 120.34767 * 180.26097 * 24 23 22 40 40 H 1.07994 * 119.46089 * 179.67594 * 25 24 23 41 41 H 1.07998 * 119.71447 * 180.02562 * 27 26 25 42 42 H 1.09004 * 113.81395 * 221.67362 * 28 19 18 43 43 H 1.09001 * 113.81459 * 90.14368 * 28 19 18 44 44 H 1.09005 * 113.46755 * 141.68054 * 29 11 10 45 45 H 1.09000 * 113.47001 * 272.11712 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.1490 -3.7441 0.0005 11 7 1.2101 -4.3574 0.9521 12 6 0.8348 -5.6112 1.2735 13 8 1.3290 -6.5583 0.6991 14 6 -0.1989 -5.8367 2.3467 15 1 -0.1803 -5.1272 3.1741 16 6 -1.5628 -6.3812 1.9122 17 6 -0.5855 -7.2775 2.6619 18 6 0.0813 -8.5757 2.1931 19 7 0.3723 -8.8158 3.6213 20 6 1.2965 -9.5364 4.2870 21 8 1.3604 -9.4715 5.4991 22 6 2.2325 -10.4060 3.5430 23 6 2.0786 -10.6033 2.1653 24 6 2.9846 -11.4220 1.5149 25 6 3.9970 -12.0232 2.2416 26 7 4.1142 -11.8233 3.5403 27 6 3.2808 -11.0481 4.2028 28 6 -0.7537 -7.9509 4.0286 29 6 0.8563 -3.0000 1.3938 30 1 -0.4850 0.8400 -0.0004 31 1 0.4419 -2.5321 -0.7289 32 1 3.1386 -3.5656 0.4211 33 1 2.1853 -4.2531 -0.9626 34 1 -2.4411 -6.0300 2.4538 35 1 -1.7119 -6.5767 0.8502 36 1 -0.6129 -9.2949 1.7585 37 1 0.9708 -8.4181 1.5831 38 1 1.2761 -10.1248 1.6235 39 1 2.8996 -11.5939 0.4521 40 1 4.7025 -12.6669 1.7374 41 1 3.4097 -10.9087 5.2660 42 1 -0.5253 -7.2987 4.8716 43 1 -1.6981 -8.4829 4.1438 44 1 -0.2044 -2.8775 1.6130 45 1 1.4981 -2.6212 2.1893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269358997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:57 Heat of formation + Delta-G solvation = 65.041992 kcal Electronic energy + Delta-G solvation = -28656.992336 eV Core-core repulsion = 24642.900424 eV Total energy + Delta-G solvation = -4014.091912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.14153 -41.29688 -40.57215 -39.39395 -38.36562 -35.71657 -34.64382 -33.79534 -32.47681 -31.11173 -29.17397 -27.57561 -27.33981 -26.71475 -25.19726 -24.56978 -24.36069 -22.09910 -21.22884 -20.25909 -19.46750 -18.83089 -18.47809 -18.14412 -17.89839 -17.54487 -16.94647 -16.82267 -16.60307 -16.42086 -16.16899 -15.49948 -15.29951 -15.24065 -14.87666 -14.62662 -14.43859 -14.24932 -14.07532 -13.96387 -13.45556 -13.29658 -13.27922 -13.17035 -13.09955 -12.75807 -12.58295 -12.18613 -11.98182 -11.73856 -11.47376 -11.32506 -11.14015 -11.06517 -11.03840 -10.69812 -10.54772 -10.42434 -10.33089 -9.82223 -9.55510 -8.17391 -6.27793 -0.45813 0.12017 1.44972 1.45564 1.49588 1.56501 1.59178 1.66622 1.93671 2.45637 2.69523 2.79417 3.00131 3.13278 3.15013 3.30184 3.47986 3.68597 3.72723 3.78981 3.84672 3.95645 4.16679 4.25920 4.28884 4.39437 4.40275 4.43050 4.49587 4.56759 4.64829 4.68041 4.70581 4.74983 4.78520 4.86262 4.89284 4.91394 4.94794 4.99172 5.03056 5.12868 5.53387 5.59765 5.81980 6.23627 6.43630 6.77978 6.80795 6.86866 6.91519 7.16775 7.42408 8.92574 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016475 B = 0.002333 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.088357 B =12000.353919 C =12723.441905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.528 4.528 8 H 0.063 0.937 9 C 0.025 3.975 10 C 0.106 3.894 11 N -0.641 5.641 12 C 0.556 3.444 13 O -0.584 6.584 14 C -0.170 4.170 15 H 0.130 0.870 16 C -0.092 4.092 17 C -0.143 4.143 18 C 0.128 3.872 19 N -0.640 5.640 20 C 0.582 3.418 21 O -0.579 6.579 22 C -0.202 4.202 23 C -0.052 4.052 24 C -0.171 4.171 25 C 0.118 3.882 26 N -0.510 5.510 27 C 0.143 3.857 28 C 0.152 3.848 29 C 0.114 3.886 30 H 0.265 0.735 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.143 0.857 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.160 0.840 39 H 0.178 0.822 40 H 0.196 0.804 41 H 0.160 0.840 42 H 0.080 0.920 43 H 0.132 0.868 44 H 0.065 0.935 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.434 -19.662 2.685 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.566 4.566 8 H 0.081 0.919 9 C 0.005 3.995 10 C -0.017 4.017 11 N -0.374 5.374 12 C 0.348 3.652 13 O -0.466 6.466 14 C -0.191 4.191 15 H 0.148 0.852 16 C -0.130 4.130 17 C -0.145 4.145 18 C 0.007 3.993 19 N -0.373 5.373 20 C 0.373 3.627 21 O -0.461 6.461 22 C -0.207 4.207 23 C -0.078 4.078 24 C -0.190 4.190 25 C -0.038 4.038 26 N -0.219 5.219 27 C -0.015 4.015 28 C 0.031 3.969 29 C -0.009 4.009 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.161 0.839 35 H 0.126 0.874 36 H 0.147 0.853 37 H 0.113 0.887 38 H 0.177 0.823 39 H 0.195 0.805 40 H 0.213 0.787 41 H 0.177 0.823 42 H 0.099 0.901 43 H 0.149 0.851 44 H 0.083 0.917 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.531 -20.735 3.640 21.204 hybrid contribution -0.051 1.730 -0.276 1.753 sum -2.582 -19.005 3.364 19.473 Atomic orbital electron populations 1.70043 1.07233 1.27783 1.50310 1.25703 0.95577 1.02343 0.94076 0.85554 0.79183 0.79649 0.77560 1.19089 1.20843 1.20613 1.21227 0.93236 0.90655 1.51523 0.91875 1.20164 0.94566 0.91523 0.93198 1.23200 0.94356 0.92231 0.91890 1.49930 1.42073 1.05193 1.40162 1.19745 0.82430 0.80286 0.82754 1.90525 1.59075 1.40943 1.56096 1.22069 0.98795 0.97984 1.00275 0.85167 1.23028 0.91080 0.97085 1.01785 1.22412 1.03862 0.89934 0.98269 1.23275 1.00693 0.93174 0.82192 1.49799 1.29943 1.47116 1.10446 1.17922 0.80130 0.78646 0.86030 1.90742 1.72979 1.67425 1.14936 1.20912 1.00232 1.03411 0.96124 1.22549 0.98880 0.93993 0.92374 1.22577 0.95306 0.97551 1.03549 1.23706 0.95889 0.95094 0.89141 1.67839 1.26686 1.16282 1.11080 1.22968 0.88246 0.89576 1.00686 1.22915 0.89736 0.89385 0.94824 1.23266 1.00010 0.76992 1.00585 0.92602 0.93916 0.90487 0.92242 0.83937 0.87396 0.85308 0.88678 0.82270 0.80499 0.78748 0.82264 0.90138 0.85084 0.91681 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.51 13.26 21.44 0.28 -48.23 16 2 C 0.02 1.19 5.46 84.65 0.46 1.65 16 3 Si 0.95 40.05 29.54 68.60 2.03 42.07 16 4 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.53 -26.14 8.82 25.60 0.23 -25.92 16 8 H 0.06 3.07 7.81 -2.91 -0.02 3.04 16 9 C 0.02 1.12 3.77 -11.29 -0.04 1.08 16 10 C 0.11 4.22 8.19 83.18 0.68 4.90 16 11 N -0.64 -24.26 3.69 -858.84 -3.17 -27.43 16 12 C 0.56 19.24 7.86 87.66 0.69 19.93 16 13 O -0.58 -22.13 14.93 -3.05 -0.05 -22.18 16 14 C -0.17 -4.31 6.02 -11.67 -0.07 -4.38 16 15 H 0.13 3.16 8.14 -2.38 -0.02 3.14 16 16 C -0.09 -1.58 10.23 30.42 0.31 -1.27 16 17 C -0.14 -2.80 3.04 -52.34 -0.16 -2.96 16 18 C 0.13 2.49 5.74 86.24 0.49 2.99 16 19 N -0.64 -14.98 3.60 -850.84 -3.06 -18.04 16 20 C 0.58 16.70 7.99 86.79 0.69 17.39 16 21 O -0.58 -20.33 17.12 -3.88 -0.07 -20.39 16 22 C -0.20 -5.08 5.89 -19.99 -0.12 -5.20 16 23 C -0.05 -1.02 9.18 22.73 0.21 -0.81 16 24 C -0.17 -2.56 10.10 22.33 0.23 -2.34 16 25 C 0.12 1.95 11.17 84.71 0.95 2.89 16 26 N -0.51 -11.87 10.35 -194.76 -2.01 -13.88 16 27 C 0.14 3.65 10.77 85.02 0.92 4.57 16 28 C 0.15 2.74 8.85 86.24 0.76 3.50 16 29 C 0.11 4.53 7.98 83.09 0.66 5.19 16 30 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 31 H 0.04 2.14 8.11 -2.38 -0.02 2.12 16 32 H 0.08 3.00 8.10 -2.39 -0.02 2.98 16 33 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.13 1.60 8.05 -2.38 -0.02 1.58 16 37 H 0.10 2.37 4.72 -2.39 -0.01 2.35 16 38 H 0.16 2.67 4.25 -2.91 -0.01 2.66 16 39 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 40 H 0.20 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.16 4.10 7.68 -2.91 -0.02 4.08 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 45 H 0.07 2.93 8.10 -2.39 -0.02 2.91 16 Total: -1.00 -69.05 383.10 1.86 -67.18 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 1.02 Total: 19.69 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 6.89 Total: 21.22 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -7.96 Total: -107.59 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.11 Total: -42.57 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.07 kcal Total: -69.05 1.86 -67.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269358997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.225 kcal (2) G-P(sol) polarization free energy of solvation -69.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds