Wall clock time and date at job start Sat Apr 11 2020 06:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39672 * 120.11545 * 77.85428 * 3 2 1 5 5 C 1.37975 * 119.99868 * 180.02562 * 4 3 2 6 6 C 1.38253 * 120.23206 * 0.02562 * 5 4 3 7 7 C 1.38987 * 120.23104 * 359.97438 * 6 5 4 8 8 N 1.39704 * 119.99932 * 179.97438 * 7 6 5 9 9 C 1.48038 * 111.00364 * 35.61645 * 8 7 6 10 10 C 1.53503 * 86.04934 * 137.29036 * 9 8 7 11 11 C 1.48048 * 111.00151 * 135.05877 * 8 7 6 12 12 C 1.52909 * 113.68599 * 222.24067 * 10 9 8 13 13 O 1.43383 * 108.13396 * 274.11617 * 12 10 9 14 14 C 1.42817 * 113.34222 * 294.21363 * 13 12 10 15 15 C 1.50274 * 110.49584 * 51.30495 * 14 13 12 16 16 O 1.21280 * 118.97000 * 161.62644 * 15 14 13 17 17 N 1.34267 * 122.05606 * 341.59330 * 15 14 13 18 18 C 1.46504 * 119.37731 * 181.97393 * 17 15 14 19 19 C 1.53003 * 109.46813 * 275.58216 * 18 17 15 20 20 C 1.50701 * 109.47307 * 174.84186 * 19 18 17 21 21 H 1.08007 * 119.99702 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00525 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99873 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00348 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46784 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46867 * 119.99885 * 24 22 20 27 27 H 1.48493 * 109.47113 * 240.00206 * 24 22 20 28 28 C 1.38662 * 120.00023 * 0.25086 * 7 6 5 29 29 H 1.08001 * 120.00674 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.88847 * 180.02562 * 5 4 3 31 31 H 1.08001 * 119.88401 * 179.97438 * 6 5 4 32 32 H 1.09005 * 113.78290 * 23.00630 * 9 8 7 33 33 H 1.09002 * 113.88793 * 251.58520 * 9 8 7 34 34 H 1.08999 * 113.77956 * 108.42049 * 11 8 7 35 35 H 1.08994 * 113.77829 * 336.98500 * 11 8 7 36 36 H 1.09005 * 109.90383 * 154.38560 * 12 10 9 37 37 H 1.09002 * 109.63347 * 33.69421 * 12 10 9 38 38 H 1.09008 * 109.26901 * 291.03971 * 14 13 12 39 39 H 1.09002 * 109.27116 * 171.56735 * 14 13 12 40 40 H 1.08994 * 109.47260 * 155.58507 * 18 17 15 41 41 H 1.08997 * 109.47293 * 35.57630 * 18 17 15 42 42 H 1.09001 * 109.46900 * 294.83711 * 19 18 17 43 43 H 1.08997 * 109.47400 * 54.83680 * 19 18 17 44 44 H 0.97004 * 120.00522 * 179.97438 * 23 22 20 45 45 H 1.08002 * 120.11583 * 179.72326 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2688 -0.2532 -1.1811 5 6 4.6486 -0.2526 -1.1783 6 6 5.3421 -0.0017 -0.0089 7 6 4.6544 0.2521 1.1719 8 7 5.3601 0.5045 2.3509 9 6 6.5983 1.2676 2.0751 10 6 6.2359 2.0982 3.3141 11 6 4.7845 1.6592 3.0769 12 6 6.4555 3.6005 3.1322 13 8 7.8234 3.8930 3.4473 14 6 8.1477 3.6708 4.8203 15 6 7.7146 2.2968 5.2476 16 8 8.1960 1.8146 6.2509 17 7 6.8109 1.5864 4.5537 18 6 6.3988 0.2700 5.0473 19 6 7.4003 -0.7871 4.5777 20 6 7.0484 -2.1190 5.1888 21 1 6.1960 -2.2029 5.8466 22 6 7.8146 -3.2303 4.9081 23 7 8.8524 -3.1282 4.1066 24 14 7.3788 -4.8811 5.6661 25 1 6.1760 -4.7298 6.5236 26 1 7.0970 -5.8620 4.5874 27 1 8.5167 -5.3636 6.4892 28 6 3.2678 0.2492 1.1810 29 1 2.7309 -0.4509 -2.0966 30 1 5.1887 -0.4487 -2.0927 31 1 6.4221 -0.0029 -0.0130 32 1 6.5683 1.8323 1.1432 33 1 7.5115 0.6834 2.1893 34 1 4.2538 1.3849 3.9887 35 1 4.2178 2.3397 2.4415 36 1 5.7975 4.1554 3.8010 37 1 6.2489 3.8783 2.0986 38 1 7.6409 4.4151 5.4346 39 1 9.2250 3.7668 4.9555 40 1 5.4088 0.0302 4.6595 41 1 6.3689 0.2835 6.1368 42 1 7.3637 -0.8649 3.4911 43 1 8.4048 -0.4991 4.8877 44 1 9.3917 -3.9099 3.9093 45 1 2.7315 0.4418 2.0984 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274817269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:29 Heat of formation + Delta-G solvation = 38.356732 kcal Electronic energy + Delta-G solvation = -30108.526440 eV Core-core repulsion = 26093.277369 eV Total energy + Delta-G solvation = -4015.249072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.88496 -39.90977 -38.47839 -37.48356 -36.52310 -34.77598 -33.00672 -31.65080 -31.55220 -29.89364 -29.18417 -27.17302 -26.94264 -25.35917 -24.16980 -23.63313 -22.10781 -21.16352 -20.89328 -18.86143 -18.22468 -17.67673 -16.93466 -16.45629 -16.15494 -16.06425 -15.94478 -15.48032 -15.22740 -14.67834 -14.49101 -14.28541 -14.14521 -14.06277 -13.72287 -13.63717 -13.33766 -13.04208 -12.91559 -12.75804 -12.45027 -12.26985 -12.19734 -12.04803 -11.79783 -11.53714 -11.29068 -11.23009 -11.00276 -10.89291 -10.65265 -10.49872 -10.10302 -9.81900 -9.71480 -9.29918 -9.16533 -8.94855 -8.26540 -8.20186 -8.11139 -5.93846 -3.94264 0.59625 1.11573 2.46829 2.74155 2.77421 3.03926 3.35259 3.40677 3.42630 3.46697 3.57157 3.63210 3.85535 4.21441 4.30464 4.43060 4.52341 4.59001 4.72477 4.82821 4.94376 4.96056 5.01588 5.09198 5.18020 5.20985 5.24702 5.37117 5.43273 5.45554 5.56739 5.59695 5.75888 5.96810 6.02177 6.15982 6.16871 6.42162 6.46294 6.54247 6.59353 6.81981 6.98271 7.04389 7.28280 7.63962 7.77720 7.99284 8.08136 8.38089 8.50597 9.11457 9.68152 11.17879 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007349 B = 0.004705 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3808.961072 B = 5949.526141 C = 8604.115454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.260 3.740 3 C -0.010 4.010 4 C -0.099 4.099 5 C -0.094 4.094 6 C -0.117 4.117 7 C 0.089 3.911 8 N -0.413 5.413 9 C 0.006 3.994 10 C 0.111 3.889 11 C 0.002 3.998 12 C 0.063 3.937 13 O -0.367 6.367 14 C 0.048 3.952 15 C 0.482 3.518 16 O -0.526 6.526 17 N -0.575 5.575 18 C 0.118 3.882 19 C 0.020 3.980 20 C -0.510 4.510 21 H 0.053 0.947 22 C 0.060 3.940 23 N -0.894 5.894 24 Si 0.889 3.111 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.285 1.285 28 C -0.099 4.099 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.027 0.973 43 H 0.015 0.985 44 H 0.258 0.742 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.129 15.741 -10.676 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.055 4.055 3 C -0.014 4.014 4 C -0.121 4.121 5 C -0.113 4.113 6 C -0.138 4.138 7 C -0.009 4.009 8 N -0.126 5.126 9 C -0.122 4.122 10 C 0.022 3.978 11 C -0.126 4.126 12 C -0.015 4.015 13 O -0.284 6.284 14 C -0.032 4.032 15 C 0.268 3.732 16 O -0.402 6.402 17 N -0.307 5.307 18 C -0.002 4.002 19 C -0.017 4.017 20 C -0.549 4.549 21 H 0.071 0.929 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.717 3.283 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.122 4.122 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.107 0.893 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.102 0.898 39 H 0.146 0.854 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.033 0.967 44 H 0.067 0.933 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.294 14.818 -9.937 19.675 hybrid contribution -0.010 -0.822 0.120 0.831 sum -8.304 13.996 -9.818 19.006 Atomic orbital electron populations 1.81243 1.12119 1.08933 1.07567 1.25741 0.92688 0.93560 0.93559 1.15772 0.84022 1.06393 0.95229 1.21042 0.94375 1.00086 0.96588 1.20947 0.93388 0.98625 0.98346 1.21340 1.00898 1.00288 0.91275 1.19498 0.92265 0.98438 0.90736 1.65831 1.03987 1.29448 1.13367 1.24688 0.95771 0.94836 0.96883 1.22157 0.94154 0.94428 0.87036 1.24514 0.96186 0.91253 1.00618 1.22989 0.84118 0.91442 1.02904 1.88148 1.26963 1.87606 1.25712 1.22829 1.03853 0.93270 0.83210 1.20925 0.79733 0.88081 0.84429 1.90786 1.53413 1.70105 1.25884 1.47555 1.41409 1.20057 1.21636 1.22001 1.00224 0.79532 0.98445 1.19331 0.93746 0.91519 0.97132 1.21096 1.12396 0.93330 1.28095 0.92897 1.24923 0.95055 0.98832 0.95272 1.69972 1.17422 1.29591 1.36422 0.86590 0.78330 0.84311 0.79075 1.19814 1.21132 1.21114 1.20850 0.92633 1.01633 0.97100 0.85283 0.84807 0.84662 0.89273 0.86767 0.87572 0.89009 0.91381 0.86742 0.89782 0.85354 0.90421 0.91707 0.95467 0.96667 0.93251 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.68 18.54 41.83 0.78 -4.90 16 2 C 0.26 2.94 15.33 -22.48 -0.34 2.59 16 3 C -0.01 -0.10 5.73 -106.96 -0.61 -0.71 16 4 C -0.10 -0.83 9.75 -39.14 -0.38 -1.21 16 5 C -0.09 -0.78 10.02 -39.67 -0.40 -1.17 16 6 C -0.12 -1.18 8.75 -39.30 -0.34 -1.53 16 7 C 0.09 1.00 5.40 -83.84 -0.45 0.55 16 8 N -0.41 -5.35 4.84 -176.54 -0.85 -6.20 16 9 C 0.01 0.07 5.39 -2.94 -0.02 0.06 16 10 C 0.11 1.30 1.55 -135.08 -0.21 1.09 16 11 C 0.00 0.02 5.46 -2.95 -0.02 0.00 16 12 C 0.06 0.55 6.10 37.11 0.23 0.77 16 13 O -0.37 -4.11 10.84 -35.23 -0.38 -4.49 16 14 C 0.05 0.57 6.94 35.80 0.25 0.82 16 15 C 0.48 8.22 7.59 -11.42 -0.09 8.14 16 16 O -0.53 -11.49 16.47 5.56 0.09 -11.40 16 17 N -0.57 -9.40 2.67 -162.04 -0.43 -9.83 16 18 C 0.12 2.39 4.40 -4.04 -0.02 2.37 16 19 C 0.02 0.52 5.09 -27.88 -0.14 0.38 16 20 C -0.51 -14.50 9.11 -34.44 -0.31 -14.81 16 21 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 24 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 28 C -0.10 -1.02 8.66 -38.95 -0.34 -1.36 16 29 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 30 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.14 1.35 7.04 -52.49 -0.37 0.98 16 32 H 0.09 0.78 6.97 -51.93 -0.36 0.42 16 33 H 0.11 1.80 6.94 -51.93 -0.36 1.44 16 34 H 0.11 1.13 7.01 -51.93 -0.36 0.77 16 35 H 0.09 0.63 7.54 -51.93 -0.39 0.24 16 36 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 37 H 0.11 0.68 7.87 -51.93 -0.41 0.27 16 38 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 39 H 0.13 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.08 1.46 5.40 -51.93 -0.28 1.18 16 41 H 0.06 1.44 7.54 -51.93 -0.39 1.05 16 42 H 0.03 0.71 6.23 -51.93 -0.32 0.39 16 43 H 0.01 0.44 8.03 -51.93 -0.42 0.03 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.13 1.28 7.50 -52.49 -0.39 0.89 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -35.86 372.85 -8.48 -44.34 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.72 Total: -1.56 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -3.29 Total: -2.38 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.23 Total: -47.21 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.29 Total: -15.89 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.86 -8.48 -44.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274817269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.697 kcal (2) G-P(sol) polarization free energy of solvation -35.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds