Wall clock time and date at job start Sat Apr 11 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39806 * 120.07641 * 286.18726 * 3 2 1 5 5 C 1.37657 * 119.92267 * 179.97438 * 4 3 2 6 6 C 1.39179 * 120.07597 * 359.97438 * 5 4 3 7 7 N 1.39188 * 119.92223 * 180.02562 * 6 5 4 8 8 C 1.48043 * 110.99675 * 129.87376 * 7 6 5 9 9 C 1.53495 * 86.04692 * 137.28972 * 8 7 6 10 10 C 1.48048 * 110.99785 * 229.31058 * 7 6 5 11 11 C 1.52911 * 113.68703 * 222.24385 * 9 8 7 12 12 O 1.43387 * 108.13029 * 274.11440 * 11 9 8 13 13 C 1.42814 * 113.34406 * 294.20885 * 12 11 9 14 14 C 1.50282 * 110.49176 * 51.30409 * 13 12 11 15 15 O 1.21288 * 118.96898 * 161.62354 * 14 13 12 16 16 N 1.34268 * 122.06261 * 341.59498 * 14 13 12 17 17 C 1.46495 * 119.38139 * 181.97173 * 16 14 13 18 18 C 1.52999 * 109.47106 * 275.29364 * 17 16 14 19 19 C 1.50697 * 109.47520 * 174.77563 * 18 17 16 20 20 H 1.08004 * 119.99522 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00500 * 180.02562 * 19 18 17 22 22 N 1.31519 * 120.00018 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99702 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46803 * 90.00293 * 23 21 19 25 25 H 1.48497 * 109.46979 * 209.99713 * 23 21 19 26 26 H 1.48492 * 109.47441 * 330.00274 * 23 21 19 27 27 C 1.39177 * 120.14891 * 0.29298 * 6 5 4 28 28 C 1.37649 * 120.07519 * 359.45124 * 27 6 5 29 29 H 1.08000 * 120.03830 * 359.95719 * 4 3 2 30 30 H 1.08000 * 119.95740 * 179.97438 * 5 4 3 31 31 H 1.09000 * 113.78030 * 23.00216 * 8 7 6 32 32 H 1.08997 * 113.78009 * 251.57210 * 8 7 6 33 33 H 1.09003 * 113.77542 * 108.42948 * 10 7 6 34 34 H 1.08997 * 113.78183 * 336.99534 * 10 7 6 35 35 H 1.09001 * 109.90685 * 154.38884 * 11 9 8 36 36 H 1.08998 * 109.63423 * 33.68250 * 11 9 8 37 37 H 1.09001 * 109.27151 * 291.04847 * 13 12 11 38 38 H 1.08998 * 109.27812 * 171.56421 * 13 12 11 39 39 H 1.09003 * 109.47314 * 155.29770 * 17 16 14 40 40 H 1.08998 * 109.47272 * 35.29570 * 17 16 14 41 41 H 1.09005 * 109.47620 * 294.77727 * 18 17 16 42 42 H 1.09004 * 109.47110 * 54.77321 * 18 17 16 43 43 H 0.96991 * 119.99742 * 179.97438 * 22 21 19 44 44 H 1.07997 * 119.96009 * 179.72304 * 27 6 5 45 45 H 1.08005 * 120.03561 * 180.28976 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -0.3363 1.1619 5 6 4.6453 -0.3352 1.1582 6 6 5.3395 0.0004 -0.0006 7 7 6.7313 0.0000 -0.0009 8 6 7.2613 -0.7724 -1.1473 9 6 8.2742 0.3692 -1.3115 10 6 7.2621 1.2572 -0.5748 11 6 8.5027 0.7834 -2.7656 12 8 9.5120 -0.0712 -3.3196 13 6 10.7947 0.1031 -2.7162 14 6 10.6886 0.0139 -1.2198 15 8 11.6916 -0.1975 -0.5714 16 7 9.5185 0.1613 -0.5781 17 6 9.4895 0.1063 0.8855 18 6 9.4006 -1.3521 1.3394 19 6 9.4999 -1.4177 2.8417 20 1 9.6146 -0.5098 3.4154 21 6 9.4445 -2.6366 3.4838 22 7 9.5317 -2.6938 4.7948 23 14 9.2455 -4.2067 2.4915 24 1 10.5848 -4.7375 2.1310 25 1 8.5151 -5.2147 3.3012 26 1 8.4786 -3.9161 1.2535 27 6 4.6449 0.3417 -1.1574 28 6 3.2685 0.3375 -1.1621 29 1 2.7308 -0.5969 2.0613 30 1 5.1873 -0.5950 2.0555 31 1 6.5614 -0.8619 -1.9781 32 1 7.7129 -1.7235 -0.8653 33 1 7.7143 1.9204 0.1627 34 1 6.5625 1.7682 -1.2362 35 1 8.8353 1.8205 -2.8082 36 1 7.5761 0.6705 -3.3285 37 1 11.1917 1.0803 -2.9911 38 1 11.4700 -0.6732 -3.0759 39 1 8.6219 0.6546 1.2526 40 1 10.3988 0.5561 1.2841 41 1 8.4482 -1.7749 1.0195 42 1 10.2178 -1.9211 0.8960 43 1 9.4923 -3.5512 5.2465 44 1 5.1866 0.6059 -2.0535 45 1 2.7301 0.5980 -2.0615 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274821313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:31 Heat of formation + Delta-G solvation = 45.299882 kcal Electronic energy + Delta-G solvation = -30137.472328 eV Core-core repulsion = 26122.524334 eV Total energy + Delta-G solvation = -4014.947994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.99972 -39.99657 -38.59510 -37.58000 -36.56293 -34.86638 -32.97292 -31.77883 -31.36240 -30.30336 -29.44545 -27.52168 -26.66751 -25.79451 -24.20641 -23.20721 -22.49981 -21.06245 -20.64047 -19.17470 -18.39033 -17.83427 -17.26295 -16.91304 -16.29441 -16.05081 -15.75139 -15.43098 -14.99311 -14.78122 -14.53966 -14.19156 -14.10019 -14.07298 -13.89215 -13.81705 -13.55208 -13.16111 -13.04571 -12.88464 -12.56812 -12.50680 -12.40158 -12.13712 -11.93660 -11.55047 -11.49731 -11.35041 -11.16485 -10.89594 -10.62988 -10.29923 -9.98862 -9.69016 -9.34522 -9.33584 -9.12611 -8.95253 -8.93667 -8.46302 -8.30762 -5.98435 -3.94566 0.40625 1.05802 2.41192 2.62203 2.68020 2.95234 3.35509 3.36320 3.42406 3.45322 3.53023 3.57072 3.64587 4.14898 4.27287 4.35655 4.51002 4.51203 4.56309 4.65510 4.87465 4.93314 4.96649 5.07256 5.13611 5.15688 5.26852 5.34966 5.37143 5.40788 5.52890 5.66907 5.73233 5.81838 5.97007 6.00957 6.09046 6.16927 6.41919 6.43160 6.47718 6.67462 6.80018 7.10791 7.22886 7.38917 7.43418 7.72973 7.86149 8.31667 8.58230 9.05837 9.64873 11.15165 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008442 B = 0.004543 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3315.817314 B = 6161.936190 C = 8744.500211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.259 3.741 3 C -0.041 4.041 4 C -0.061 4.061 5 C -0.086 4.086 6 C 0.096 3.904 7 N -0.431 5.431 8 C 0.005 3.995 9 C 0.110 3.890 10 C 0.003 3.997 11 C 0.062 3.938 12 O -0.367 6.367 13 C 0.048 3.952 14 C 0.480 3.520 15 O -0.525 6.525 16 N -0.577 5.577 17 C 0.128 3.872 18 C -0.016 4.016 19 C -0.508 4.508 20 H 0.071 0.929 21 C 0.070 3.930 22 N -0.905 5.905 23 Si 0.878 3.122 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.267 1.267 27 C -0.159 4.159 28 C -0.061 4.061 29 H 0.137 0.863 30 H 0.150 0.850 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.026 0.974 42 H 0.009 0.991 43 H 0.261 0.739 44 H 0.132 0.868 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.670 9.808 -18.110 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.056 4.056 3 C -0.044 4.044 4 C -0.082 4.082 5 C -0.104 4.104 6 C 0.001 3.999 7 N -0.150 5.150 8 C -0.123 4.123 9 C 0.021 3.979 10 C -0.125 4.125 11 C -0.016 4.016 12 O -0.285 6.285 13 C -0.032 4.032 14 C 0.267 3.733 15 O -0.402 6.402 16 N -0.309 5.309 17 C 0.008 3.992 18 C -0.054 4.054 19 C -0.546 4.546 20 H 0.089 0.911 21 C -0.131 4.131 22 N -0.545 5.545 23 Si 0.706 3.294 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.192 1.192 27 C -0.179 4.179 28 C -0.082 4.082 29 H 0.154 0.846 30 H 0.168 0.832 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.104 0.896 38 H 0.146 0.854 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.027 0.973 43 H 0.071 0.929 44 H 0.150 0.850 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.739 9.252 -17.073 21.724 hybrid contribution -0.009 -0.640 -0.856 1.069 sum -9.748 8.612 -17.929 22.150 Atomic orbital electron populations 1.81257 1.12135 1.09088 1.07534 1.25753 0.92692 0.93522 0.93664 1.16086 0.84178 1.08010 0.96175 1.21216 0.94136 0.96113 0.96708 1.21182 0.92792 0.97694 0.98781 1.19808 0.91140 0.95825 0.93173 1.66530 1.04678 1.06113 1.37711 1.24701 0.95734 0.99997 0.91884 1.22212 0.86420 0.96643 0.92587 1.24551 0.95798 0.93828 0.98293 1.23009 0.93269 0.94508 0.90805 1.88146 1.18043 1.62217 1.60105 1.22831 0.86532 1.04674 0.89150 1.20971 0.83689 0.77617 0.91007 1.90797 1.34731 1.47344 1.67278 1.47576 1.04459 1.70082 1.08747 1.21774 1.02130 1.00968 0.74337 1.19813 0.96586 0.91840 0.97173 1.20942 1.49577 0.94560 0.89554 0.91124 1.24920 0.94754 0.98794 0.94618 1.69908 1.51483 1.25411 1.07686 0.86813 0.78515 0.83595 0.80488 1.20511 1.21603 1.19201 1.21533 0.94353 1.03093 0.98878 1.20941 0.93810 0.96943 0.96528 0.84552 0.83194 0.89591 0.87442 0.87482 0.89262 0.91261 0.86892 0.89641 0.85366 0.89627 0.91142 0.95546 0.97318 0.92882 0.84988 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.40 18.54 41.84 0.78 -4.62 16 2 C 0.26 2.70 15.33 -22.47 -0.34 2.35 16 3 C -0.04 -0.36 5.74 -106.80 -0.61 -0.97 16 4 C -0.06 -0.56 9.75 -39.21 -0.38 -0.94 16 5 C -0.09 -0.93 9.95 -39.44 -0.39 -1.32 16 6 C 0.10 0.99 5.19 -83.82 -0.43 0.55 16 7 N -0.43 -5.16 4.72 -176.51 -0.83 -5.99 16 8 C 0.00 0.05 6.38 -2.94 -0.02 0.03 16 9 C 0.11 1.19 1.55 -135.10 -0.21 0.98 16 10 C 0.00 0.03 6.28 -2.95 -0.02 0.01 16 11 C 0.06 0.48 6.10 37.11 0.23 0.71 16 12 O -0.37 -3.83 10.84 -35.23 -0.38 -4.21 16 13 C 0.05 0.53 6.94 35.80 0.25 0.78 16 14 C 0.48 7.74 7.59 -11.42 -0.09 7.66 16 15 O -0.53 -10.94 16.49 5.55 0.09 -10.85 16 16 N -0.58 -8.90 2.67 -162.05 -0.43 -9.34 16 17 C 0.13 2.46 4.40 -4.05 -0.02 2.44 16 18 C -0.02 -0.38 4.15 -27.89 -0.12 -0.49 16 19 C -0.51 -14.30 9.66 -34.44 -0.33 -14.63 16 20 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 21 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 22 N -0.91 -27.90 13.96 55.43 0.77 -27.13 16 23 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 24 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 27 C -0.16 -1.18 7.70 -39.45 -0.30 -1.48 16 28 C -0.06 -0.44 9.75 -39.21 -0.38 -0.82 16 29 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.09 0.72 6.20 -51.93 -0.32 0.40 16 32 H 0.11 1.62 6.93 -51.93 -0.36 1.26 16 33 H 0.11 1.09 7.01 -51.93 -0.36 0.73 16 34 H 0.09 0.53 6.28 -51.93 -0.33 0.21 16 35 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 36 H 0.11 0.55 7.87 -51.93 -0.41 0.14 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.09 1.53 5.41 -51.93 -0.28 1.25 16 40 H 0.07 1.51 7.53 -51.93 -0.39 1.12 16 41 H 0.03 0.61 5.24 -51.93 -0.27 0.34 16 42 H 0.01 0.22 7.49 -51.93 -0.39 -0.17 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.13 0.65 6.30 -52.49 -0.33 0.32 16 45 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -35.84 368.50 -7.96 -43.80 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.57 Total: -1.51 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -3.28 Total: -3.21 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.28 Total: -47.08 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.29 Total: -15.06 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.84 -7.96 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274821313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.102 kcal (2) G-P(sol) polarization free energy of solvation -35.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds