Wall clock time and date at job start Sat Apr 11 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39806 * 120.07641 * 286.18726 * 3 2 1 5 5 C 1.37657 * 119.92267 * 179.97438 * 4 3 2 6 6 C 1.39179 * 120.07597 * 359.97438 * 5 4 3 7 7 N 1.39188 * 119.92223 * 180.02562 * 6 5 4 8 8 C 1.48043 * 110.99675 * 129.87376 * 7 6 5 9 9 C 1.53495 * 86.04692 * 137.28972 * 8 7 6 10 10 C 1.48048 * 110.99785 * 229.31058 * 7 6 5 11 11 C 1.52911 * 113.68703 * 222.24385 * 9 8 7 12 12 O 1.43387 * 108.13029 * 274.11440 * 11 9 8 13 13 C 1.42814 * 113.34406 * 294.20885 * 12 11 9 14 14 C 1.50282 * 110.49176 * 51.30409 * 13 12 11 15 15 O 1.21288 * 118.96898 * 161.62354 * 14 13 12 16 16 N 1.34268 * 122.06261 * 341.59498 * 14 13 12 17 17 C 1.46495 * 119.38139 * 181.97173 * 16 14 13 18 18 C 1.52999 * 109.47106 * 275.29364 * 17 16 14 19 19 C 1.50697 * 109.47520 * 174.77563 * 18 17 16 20 20 H 1.08004 * 119.99522 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00500 * 180.02562 * 19 18 17 22 22 N 1.31519 * 120.00018 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99702 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46803 * 90.00293 * 23 21 19 25 25 H 1.48497 * 109.46979 * 209.99713 * 23 21 19 26 26 H 1.48492 * 109.47441 * 330.00274 * 23 21 19 27 27 C 1.39177 * 120.14891 * 0.29298 * 6 5 4 28 28 C 1.37649 * 120.07519 * 359.45124 * 27 6 5 29 29 H 1.08000 * 120.03830 * 359.95719 * 4 3 2 30 30 H 1.08000 * 119.95740 * 179.97438 * 5 4 3 31 31 H 1.09000 * 113.78030 * 23.00216 * 8 7 6 32 32 H 1.08997 * 113.78009 * 251.57210 * 8 7 6 33 33 H 1.09003 * 113.77542 * 108.42948 * 10 7 6 34 34 H 1.08997 * 113.78183 * 336.99534 * 10 7 6 35 35 H 1.09001 * 109.90685 * 154.38884 * 11 9 8 36 36 H 1.08998 * 109.63423 * 33.68250 * 11 9 8 37 37 H 1.09001 * 109.27151 * 291.04847 * 13 12 11 38 38 H 1.08998 * 109.27812 * 171.56421 * 13 12 11 39 39 H 1.09003 * 109.47314 * 155.29770 * 17 16 14 40 40 H 1.08998 * 109.47272 * 35.29570 * 17 16 14 41 41 H 1.09005 * 109.47620 * 294.77727 * 18 17 16 42 42 H 1.09004 * 109.47110 * 54.77321 * 18 17 16 43 43 H 0.96991 * 119.99742 * 179.97438 * 22 21 19 44 44 H 1.07997 * 119.96009 * 179.72304 * 27 6 5 45 45 H 1.08005 * 120.03561 * 180.28976 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -0.3363 1.1619 5 6 4.6453 -0.3352 1.1582 6 6 5.3395 0.0004 -0.0006 7 7 6.7313 0.0000 -0.0009 8 6 7.2613 -0.7724 -1.1473 9 6 8.2742 0.3692 -1.3115 10 6 7.2621 1.2572 -0.5748 11 6 8.5027 0.7834 -2.7656 12 8 9.5120 -0.0712 -3.3196 13 6 10.7947 0.1031 -2.7162 14 6 10.6886 0.0139 -1.2198 15 8 11.6916 -0.1975 -0.5714 16 7 9.5185 0.1613 -0.5781 17 6 9.4895 0.1063 0.8855 18 6 9.4006 -1.3521 1.3394 19 6 9.4999 -1.4177 2.8417 20 1 9.6146 -0.5098 3.4154 21 6 9.4445 -2.6366 3.4838 22 7 9.5317 -2.6938 4.7948 23 14 9.2455 -4.2067 2.4915 24 1 10.5848 -4.7375 2.1310 25 1 8.5151 -5.2147 3.3012 26 1 8.4786 -3.9161 1.2535 27 6 4.6449 0.3417 -1.1574 28 6 3.2685 0.3375 -1.1621 29 1 2.7308 -0.5969 2.0613 30 1 5.1873 -0.5950 2.0555 31 1 6.5614 -0.8619 -1.9781 32 1 7.7129 -1.7235 -0.8653 33 1 7.7143 1.9204 0.1627 34 1 6.5625 1.7682 -1.2362 35 1 8.8353 1.8205 -2.8082 36 1 7.5761 0.6705 -3.3285 37 1 11.1917 1.0803 -2.9911 38 1 11.4700 -0.6732 -3.0759 39 1 8.6219 0.6546 1.2526 40 1 10.3988 0.5561 1.2841 41 1 8.4482 -1.7749 1.0195 42 1 10.2178 -1.9211 0.8960 43 1 9.4923 -3.5512 5.2465 44 1 5.1866 0.6059 -2.0535 45 1 2.7301 0.5980 -2.0615 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274821313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:30 Heat of formation + Delta-G solvation = 19.262793 kcal Electronic energy + Delta-G solvation = -30138.601381 eV Core-core repulsion = 26122.524334 eV Total energy + Delta-G solvation = -4016.077047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.87240 -40.93931 -39.49174 -38.49483 -37.44595 -36.25286 -34.89517 -32.89963 -32.09620 -31.84459 -30.21417 -28.74686 -27.47300 -26.77313 -25.66494 -23.89652 -23.32104 -22.62740 -21.84854 -19.89976 -19.49229 -19.09004 -18.49773 -18.05407 -17.45527 -16.88037 -16.80394 -16.35488 -16.24801 -15.74309 -15.57708 -15.41296 -15.23193 -14.98543 -14.85289 -14.76905 -14.58665 -14.45706 -14.30960 -13.96990 -13.85591 -13.53432 -13.38066 -13.11358 -12.97514 -12.92622 -12.71663 -12.40792 -12.19537 -12.15433 -11.94089 -11.91469 -11.62573 -11.38632 -11.35111 -10.75023 -10.34850 -9.98690 -9.79727 -9.73356 -9.54645 -8.28957 -6.29931 -0.29991 0.42097 1.29831 1.31547 1.42404 1.46864 1.60553 1.85569 1.86828 2.33787 2.62322 2.78838 2.85809 2.89042 3.07476 3.29421 3.48043 3.53579 3.90041 3.95848 3.96706 4.19151 4.25351 4.30178 4.35758 4.43311 4.54562 4.57938 4.60871 4.61844 4.70291 4.73937 4.81482 4.83009 4.99439 5.08626 5.13094 5.14553 5.19699 5.32957 5.43014 5.52180 5.55012 5.70284 5.74066 5.86549 6.27827 6.37837 6.44777 6.50980 6.75261 7.09576 7.33186 8.87936 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008442 B = 0.004543 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3315.817314 B = 6161.936190 C = 8744.500211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.282 3.718 3 C -0.047 4.047 4 C -0.059 4.059 5 C -0.112 4.112 6 C 0.089 3.911 7 N -0.474 5.474 8 C 0.007 3.993 9 C 0.100 3.900 10 C 0.016 3.984 11 C 0.063 3.937 12 O -0.372 6.372 13 C 0.062 3.938 14 C 0.469 3.531 15 O -0.588 6.588 16 N -0.578 5.578 17 C 0.146 3.854 18 C 0.001 3.999 19 C -0.516 4.516 20 H 0.034 0.966 21 C 0.013 3.987 22 N -0.949 5.949 23 Si 0.942 3.058 24 H -0.281 1.281 25 H -0.279 1.279 26 H -0.249 1.249 27 C -0.145 4.145 28 C -0.044 4.044 29 H 0.139 0.861 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.138 0.862 35 H 0.095 0.905 36 H 0.159 0.841 37 H 0.119 0.881 38 H 0.135 0.865 39 H 0.098 0.902 40 H 0.037 0.963 41 H 0.035 0.965 42 H -0.017 1.017 43 H 0.265 0.735 44 H 0.173 0.827 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.474 10.771 -22.986 27.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.032 4.032 3 C -0.051 4.051 4 C -0.080 4.080 5 C -0.131 4.131 6 C -0.007 4.007 7 N -0.195 5.195 8 C -0.121 4.121 9 C 0.013 3.987 10 C -0.111 4.111 11 C -0.014 4.014 12 O -0.289 6.289 13 C -0.017 4.017 14 C 0.259 3.741 15 O -0.469 6.469 16 N -0.309 5.309 17 C 0.024 3.976 18 C -0.037 4.037 19 C -0.555 4.555 20 H 0.053 0.947 21 C -0.184 4.184 22 N -0.590 5.590 23 Si 0.767 3.233 24 H -0.207 1.207 25 H -0.204 1.204 26 H -0.173 1.173 27 C -0.164 4.164 28 C -0.064 4.064 29 H 0.157 0.843 30 H 0.137 0.863 31 H 0.146 0.854 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.155 0.845 35 H 0.113 0.887 36 H 0.176 0.824 37 H 0.137 0.863 38 H 0.152 0.848 39 H 0.116 0.884 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.002 0.998 43 H 0.074 0.926 44 H 0.190 0.810 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.587 10.238 -21.989 26.881 hybrid contribution 0.551 -0.872 0.761 1.282 sum -11.036 9.366 -21.228 25.694 Atomic orbital electron populations 1.81285 1.13423 1.10808 1.08971 1.25908 0.92756 0.92193 0.92357 1.16134 0.83226 1.08915 0.96822 1.21176 0.93511 0.95961 0.97368 1.21035 0.93435 0.99985 0.98677 1.19872 0.90541 0.96286 0.93965 1.66406 1.06106 1.07776 1.39180 1.24707 0.96544 0.97931 0.92873 1.22643 0.84346 0.97212 0.94508 1.24611 0.95636 0.92671 0.98202 1.23404 0.94524 0.95275 0.88225 1.88155 1.17948 1.63274 1.59555 1.22761 0.87614 1.06706 0.84608 1.22120 0.82755 0.75939 0.93320 1.90764 1.36888 1.50158 1.69050 1.47558 1.06680 1.69504 1.07114 1.21194 1.00949 0.97737 0.77761 1.19596 0.95650 0.94619 0.93861 1.21279 1.48849 0.93369 0.91973 0.94734 1.25789 0.94523 1.02440 0.95616 1.70047 1.52953 1.26493 1.09495 0.85783 0.78588 0.79285 0.79652 1.20655 1.20438 1.17309 1.21779 0.94280 1.01580 0.98780 1.21288 0.93865 0.94677 0.96610 0.84304 0.86272 0.85431 0.91800 0.89094 0.84497 0.88740 0.82381 0.86343 0.84774 0.88419 0.94462 0.94652 0.99849 0.92624 0.81012 0.81986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.37 18.54 19.00 0.35 -11.02 16 2 C 0.28 5.35 15.33 88.33 1.35 6.70 16 3 C -0.05 -0.71 5.74 -21.28 -0.12 -0.83 16 4 C -0.06 -1.04 9.75 22.51 0.22 -0.82 16 5 C -0.11 -2.42 9.95 22.36 0.22 -2.20 16 6 C 0.09 1.59 5.19 38.43 0.20 1.79 16 7 N -0.47 -10.45 4.72 -712.35 -3.36 -13.81 16 8 C 0.01 0.14 6.38 86.24 0.55 0.69 16 9 C 0.10 1.83 1.55 5.21 0.01 1.83 16 10 C 0.02 0.23 6.28 86.24 0.54 0.77 16 11 C 0.06 0.59 6.10 71.95 0.44 1.03 16 12 O -0.37 -5.94 10.84 -148.98 -1.61 -7.55 16 13 C 0.06 1.20 6.94 71.10 0.49 1.70 16 14 C 0.47 14.93 7.59 87.61 0.67 15.60 16 15 O -0.59 -25.50 16.49 -3.06 -0.05 -25.55 16 16 N -0.58 -17.52 2.67 -785.28 -2.09 -19.62 16 17 C 0.15 5.88 4.40 86.38 0.38 6.26 16 18 C 0.00 0.05 4.15 29.85 0.12 0.17 16 19 C -0.52 -30.78 9.66 25.60 0.25 -30.53 16 20 H 0.03 2.24 7.99 -2.91 -0.02 2.22 16 21 C 0.01 0.79 5.47 84.65 0.46 1.26 16 22 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 23 Si 0.94 46.97 27.47 68.60 1.88 48.85 16 24 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 27 C -0.14 -1.35 7.70 22.36 0.17 -1.18 16 28 C -0.04 -0.41 9.75 22.51 0.22 -0.19 16 29 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 31 H 0.13 1.37 6.20 -2.39 -0.01 1.36 16 32 H 0.06 1.84 6.93 -2.39 -0.02 1.83 16 33 H 0.09 1.68 7.01 -2.39 -0.02 1.66 16 34 H 0.14 0.70 6.28 -2.39 -0.02 0.69 16 35 H 0.09 0.52 8.13 -2.39 -0.02 0.50 16 36 H 0.16 0.14 7.87 -2.39 -0.02 0.13 16 37 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.10 3.65 5.41 -2.39 -0.01 3.64 16 40 H 0.04 1.72 7.53 -2.39 -0.02 1.71 16 41 H 0.04 1.68 5.24 -2.38 -0.01 1.67 16 42 H -0.02 -0.92 7.49 -2.38 -0.02 -0.94 16 43 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 44 H 0.17 0.24 6.30 -2.91 -0.02 0.22 16 45 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 Total: -1.00 -86.95 368.50 2.57 -84.38 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 0.98 Total: 2.92 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 6.18 Total: 2.05 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -4.80 Total: -105.10 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -1.66 Total: -33.10 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.88 Total: 48.85 kcal Total: -86.95 2.57 -84.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274821313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.644 kcal (2) G-P(sol) polarization free energy of solvation -86.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds