Wall clock time and date at job start Sat Apr 11 2020 06:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39805 * 120.07506 * 230.31079 * 3 2 1 5 5 C 1.37646 * 119.92717 * 179.97438 * 4 3 2 6 6 C 1.39177 * 120.07070 * 359.97438 * 5 4 3 7 7 N 1.39193 * 119.92003 * 180.02562 * 6 5 4 8 8 C 1.48068 * 110.99573 * 143.83047 * 7 6 5 9 9 C 1.53384 * 86.02442 * 222.76586 * 8 7 6 10 10 C 1.48060 * 110.99961 * 44.38186 * 7 6 5 11 11 C 1.52555 * 113.83985 * 138.14727 * 9 8 7 12 12 N 1.46271 * 109.56868 * 176.52167 * 11 9 8 13 13 C 1.46496 * 118.71678 * 163.89820 * 12 11 9 14 14 C 1.52997 * 109.47032 * 90.00189 * 13 12 11 15 15 C 1.50708 * 109.47126 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99827 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00144 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00113 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00107 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47130 * 90.00103 * 19 17 15 21 21 H 1.48505 * 109.47276 * 209.99686 * 19 17 15 22 22 H 1.48493 * 109.47249 * 329.99929 * 19 17 15 23 23 C 1.33721 * 122.56540 * 344.17917 * 12 11 9 24 24 O 1.21284 * 118.37728 * 182.95654 * 23 12 11 25 25 C 1.50143 * 123.25244 * 2.72195 * 23 12 11 26 26 O 1.42687 * 113.78964 * 268.80256 * 9 8 7 27 27 C 1.39173 * 120.15639 * 0.29307 * 6 5 4 28 28 C 1.37654 * 120.07149 * 359.45289 * 27 6 5 29 29 H 1.08008 * 120.03565 * 359.96046 * 4 3 2 30 30 H 1.08003 * 119.96576 * 180.02562 * 5 4 3 31 31 H 1.09005 * 113.78322 * 108.48917 * 8 7 6 32 32 H 1.09002 * 113.88877 * 337.05514 * 8 7 6 33 33 H 1.08996 * 113.78416 * 22.95535 * 10 7 6 34 34 H 1.08994 * 113.78232 * 251.50057 * 10 7 6 35 35 H 1.08996 * 109.46079 * 56.49071 * 11 9 8 36 36 H 1.09004 * 109.43926 * 296.54166 * 11 9 8 37 37 H 1.09008 * 109.47202 * 210.00017 * 13 12 11 38 38 H 1.09001 * 109.47364 * 329.99809 * 13 12 11 39 39 H 1.09005 * 109.47245 * 299.99507 * 14 13 12 40 40 H 1.08998 * 109.47618 * 60.00063 * 14 13 12 41 41 H 0.97000 * 120.00580 * 180.02562 * 18 17 15 42 42 H 1.09006 * 109.48204 * 222.45947 * 25 23 12 43 43 H 1.09005 * 109.04251 * 102.86534 * 25 23 12 44 44 H 1.08003 * 119.96874 * 179.72062 * 27 6 5 45 45 H 1.08002 * 120.04143 * 180.29313 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2683 0.7736 0.9310 5 6 4.6448 0.7715 0.9286 6 6 5.3394 0.0007 0.0011 7 7 6.7313 0.0005 0.0018 8 6 7.2618 -1.3402 -0.3351 9 6 8.2719 -1.1071 0.7955 10 6 7.2611 -0.1120 1.3798 11 6 8.5083 -2.3321 1.6735 12 7 9.5425 -2.0329 2.6636 13 6 9.6829 -2.9164 3.8237 14 6 10.6696 -4.0383 3.4940 15 6 10.8136 -4.9475 4.6872 16 1 10.2572 -4.7452 5.5905 17 6 11.6562 -6.0370 4.6260 18 7 12.3341 -6.2832 3.5262 19 14 11.8352 -7.1636 6.1052 20 1 10.8277 -8.2515 6.0237 21 1 13.1987 -7.7517 6.1175 22 1 11.6214 -6.3833 7.3504 23 6 10.3613 -0.9814 2.5540 24 8 11.2275 -0.8356 3.3903 25 6 10.2648 0.0250 1.4439 26 8 9.4900 -0.5025 0.3634 27 6 4.6455 -0.7657 -0.9308 28 6 3.2690 -0.7723 -0.9305 29 1 2.7298 1.3719 1.6512 30 1 5.1864 1.3681 1.6478 31 1 7.7152 -1.3976 -1.3247 32 1 6.5630 -2.1534 -0.1393 33 1 6.5608 -0.5598 2.0848 34 1 7.7140 0.8065 1.7529 35 1 8.8313 -3.1673 1.0521 36 1 7.5823 -2.5964 2.1842 37 1 10.0545 -2.3439 4.6736 38 1 8.7128 -3.3471 4.0720 39 1 10.2980 -4.6109 2.6441 40 1 11.6397 -3.6077 3.2457 41 1 12.9267 -7.0499 3.4830 42 1 11.2652 0.2684 1.0860 43 1 9.7873 0.9284 1.8235 44 1 5.1876 -1.3592 -1.6521 45 1 2.7311 -1.3708 -1.6508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274822242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:33 Heat of formation + Delta-G solvation = 32.666580 kcal Electronic energy + Delta-G solvation = -28806.940268 eV Core-core repulsion = 24791.444453 eV Total energy + Delta-G solvation = -4015.495815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.07712 -40.15582 -38.90269 -37.14074 -36.32472 -35.53705 -33.14459 -32.13537 -31.77699 -30.27147 -29.12913 -27.57028 -26.93404 -25.83929 -24.60922 -22.93402 -22.70896 -21.65663 -20.40712 -19.35133 -18.72656 -17.65816 -17.45526 -16.72846 -16.35689 -16.10695 -15.94175 -15.49726 -15.04565 -14.75904 -14.65236 -14.45050 -14.25315 -14.22696 -14.06670 -13.95380 -13.58099 -13.15543 -13.13430 -13.00795 -12.70708 -12.62153 -12.51288 -12.35895 -12.18894 -11.69121 -11.53145 -11.38324 -11.14850 -10.94962 -10.72667 -10.50754 -10.39035 -9.95902 -9.90278 -9.58577 -9.39788 -9.07830 -8.54403 -8.39688 -8.21148 -6.04663 -4.08178 0.28070 0.83130 2.30872 2.43564 2.77078 2.96759 3.14153 3.27597 3.29107 3.36034 3.39660 3.47604 3.54567 3.88728 4.03866 4.15822 4.34825 4.41704 4.48615 4.63848 4.69352 4.74522 4.86938 4.89307 5.01734 5.10262 5.17661 5.24295 5.28791 5.30853 5.31698 5.39505 5.48917 5.54796 5.64998 5.82231 5.97292 6.05647 6.08468 6.41334 6.53966 6.60442 6.72490 6.79759 7.12684 7.51471 7.64774 7.83824 7.94675 8.29095 8.41675 8.98218 9.55903 11.06691 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013909 B = 0.002363 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.625073 B =11847.939080 C =13010.459255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.258 3.742 3 C -0.061 4.061 4 C -0.042 4.042 5 C -0.149 4.149 6 C 0.113 3.887 7 N -0.429 5.429 8 C 0.031 3.969 9 C 0.073 3.927 10 C -0.011 4.011 11 C 0.100 3.900 12 N -0.597 5.597 13 C 0.113 3.887 14 C 0.014 3.986 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.479 3.521 24 O -0.535 6.535 25 C 0.051 3.949 26 O -0.334 6.334 27 C -0.154 4.154 28 C -0.041 4.041 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.015 0.985 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.132 0.868 43 H 0.086 0.914 44 H 0.139 0.861 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.771 14.096 -10.421 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.057 4.057 3 C -0.065 4.065 4 C -0.064 4.064 5 C -0.169 4.169 6 C 0.013 3.987 7 N -0.143 5.143 8 C -0.096 4.096 9 C 0.031 3.969 10 C -0.138 4.138 11 C -0.024 4.024 12 N -0.330 5.330 13 C -0.007 4.007 14 C -0.023 4.023 15 C -0.560 4.560 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.722 3.278 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C 0.265 3.735 24 O -0.413 6.413 25 C -0.028 4.028 26 O -0.252 6.252 27 C -0.174 4.174 28 C -0.063 4.063 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.133 0.867 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.033 0.967 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.150 0.850 43 H 0.104 0.896 44 H 0.156 0.844 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.647 14.632 -10.652 24.591 hybrid contribution 0.266 -1.213 1.269 1.775 sum -16.381 13.419 -9.383 23.162 Atomic orbital electron populations 1.81274 1.12141 1.08529 1.08132 1.25720 0.92649 0.93633 0.93689 1.15973 0.84273 1.04642 1.01640 1.21023 0.93728 0.95623 0.95977 1.20854 0.93695 1.02014 1.00346 1.19863 0.90414 0.94194 0.94255 1.65465 1.05134 1.27181 1.16480 1.24191 0.94433 0.89897 1.01056 1.22863 0.85989 0.92674 0.95345 1.24769 0.97229 1.01497 0.90285 1.21944 0.92646 0.96945 0.90866 1.47681 1.33399 1.26998 1.24891 1.21977 1.00722 0.91872 0.86121 1.19349 0.94312 0.91563 0.97111 1.21070 1.25899 1.09817 0.99241 0.92546 1.25001 0.95488 0.97782 0.96037 1.69970 1.27871 1.28570 1.26700 0.86556 0.77392 0.80785 0.83039 1.20652 1.21176 1.19806 1.20660 0.82106 0.82906 0.87836 1.90778 1.33256 1.75053 1.42188 1.22837 0.98472 0.95129 0.86345 1.88124 1.30649 1.76033 1.30378 1.20947 0.93811 1.01758 1.00900 1.21031 0.93740 0.95580 0.95909 0.84787 0.84646 0.86701 0.87826 0.88476 0.87812 0.89724 0.89508 0.90562 0.91734 0.96672 0.95886 0.92923 0.85037 0.89634 0.84359 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.76 18.54 41.84 0.78 -3.98 16 2 C 0.26 2.22 15.33 -22.47 -0.34 1.88 16 3 C -0.06 -0.39 5.74 -106.80 -0.61 -1.01 16 4 C -0.04 -0.24 9.75 -39.21 -0.38 -0.62 16 5 C -0.15 -0.88 8.90 -39.45 -0.35 -1.23 16 6 C 0.11 0.74 5.40 -83.82 -0.45 0.29 16 7 N -0.43 -3.19 6.34 -177.07 -1.12 -4.32 16 8 C 0.03 0.21 6.13 -2.99 -0.02 0.19 16 9 C 0.07 0.68 1.16 -90.52 -0.10 0.58 16 10 C -0.01 -0.08 5.98 -2.98 -0.02 -0.10 16 11 C 0.10 1.16 5.88 -4.39 -0.03 1.14 16 12 N -0.60 -9.69 2.83 -174.68 -0.50 -10.18 16 13 C 0.11 2.25 5.21 -4.05 -0.02 2.23 16 14 C 0.01 0.37 5.29 -27.88 -0.15 0.22 16 15 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 19 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.48 8.03 7.57 -11.73 -0.09 7.95 16 24 O -0.54 -11.46 16.33 5.55 0.09 -11.37 16 25 C 0.05 0.61 6.65 35.74 0.24 0.85 16 26 O -0.33 -3.88 10.66 -35.23 -0.38 -4.25 16 27 C -0.15 -0.85 8.73 -39.45 -0.34 -1.20 16 28 C -0.04 -0.23 9.75 -39.21 -0.38 -0.61 16 29 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 30 H 0.14 0.67 7.46 -52.48 -0.39 0.28 16 31 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 0.51 7.20 -51.93 -0.37 0.13 16 33 H 0.10 0.62 7.33 -51.93 -0.38 0.24 16 34 H 0.10 0.76 7.00 -51.93 -0.36 0.40 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 0.81 7.77 -51.93 -0.40 0.41 16 37 H 0.08 1.64 7.28 -51.92 -0.38 1.26 16 38 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.09 0.81 7.15 -51.93 -0.37 0.44 16 44 H 0.14 0.57 7.09 -52.48 -0.37 0.20 16 45 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -35.45 380.00 -9.10 -44.55 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.95 Total: -3.96 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.47 Total: -2.68 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.11 Total: -44.41 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.28 Total: -15.62 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.45 -9.10 -44.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274822242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.215 kcal (2) G-P(sol) polarization free energy of solvation -35.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds