Wall clock time and date at job start Sat Apr 11 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99964 * 2 1 4 4 H 1.48497 * 109.46961 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47028 * 300.00208 * 3 2 1 6 6 H 1.48492 * 109.46915 * 60.00326 * 3 2 1 7 7 C 1.38817 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99692 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99646 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46851 * 179.97438 * 10 9 7 12 12 H 1.08996 * 112.85065 * 43.80808 * 11 10 9 13 13 C 1.53783 * 113.61230 * 175.00180 * 11 10 9 14 14 C 1.53782 * 87.08361 * 139.98044 * 13 11 10 15 15 H 1.08997 * 113.61381 * 219.93746 * 14 13 11 16 16 N 1.46501 * 113.61383 * 89.11302 * 14 13 11 17 17 C 1.34776 * 119.99936 * 155.00097 * 16 14 13 18 18 O 1.21491 * 119.99987 * 0.02562 * 17 16 14 19 19 C 1.48345 * 119.99832 * 180.02562 * 17 16 14 20 20 C 1.41917 * 126.84293 * 180.28184 * 19 17 16 21 21 C 1.36708 * 103.81605 * 180.13509 * 20 19 17 22 22 C 1.47856 * 126.82006 * 179.87316 * 21 20 19 23 23 C 1.39558 * 120.14506 * 179.70978 * 22 21 20 24 24 C 1.37967 * 119.85599 * 179.97438 * 23 22 21 25 25 C 1.38361 * 120.14049 * 0.02562 * 24 23 22 26 26 C 1.38352 * 120.28854 * 0.27591 * 25 24 23 27 27 C 1.37960 * 120.14862 * 359.44542 * 26 25 24 28 28 O 1.34462 * 106.36690 * 359.60992 * 21 20 19 29 29 N 1.20881 * 111.73821 * 0.26570 * 28 21 20 30 30 C 1.53787 * 113.61435 * 272.49727 * 11 10 9 31 31 H 0.97003 * 119.99860 * 359.97438 * 1 2 3 32 32 H 0.96997 * 119.99793 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.46658 * 59.99856 * 10 9 7 34 34 H 1.08995 * 109.47347 * 299.99963 * 10 9 7 35 35 H 1.09003 * 113.61522 * 25.43164 * 13 11 10 36 36 H 1.08995 * 113.61584 * 254.53017 * 13 11 10 37 37 H 0.96997 * 119.99532 * 335.00712 * 16 14 13 38 38 H 1.08006 * 128.09111 * 0.02562 * 20 19 17 39 39 H 1.07994 * 120.07563 * 359.95692 * 23 22 21 40 40 H 1.08002 * 119.93106 * 179.97438 * 24 23 22 41 41 H 1.08002 * 119.85061 * 179.97438 * 25 24 23 42 42 H 1.08003 * 119.92410 * 179.71840 * 26 25 24 43 43 H 1.07995 * 120.08070 * 180.27419 * 27 26 25 44 44 H 1.08998 * 113.61137 * 105.47386 * 30 11 10 45 45 H 1.09001 * 113.61663 * 334.56968 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0638 -4.8197 -0.0031 12 1 0.2375 -4.6699 -0.6980 13 6 1.7304 -6.2000 -0.1271 14 6 0.7052 -6.7005 0.9041 15 1 1.1237 -7.3914 1.6359 16 7 -0.5385 -7.1908 0.3049 17 6 -1.2951 -8.0906 0.9640 18 8 -0.9460 -8.4947 2.0553 19 6 -2.5541 -8.5876 0.3569 20 6 -3.4589 -9.5243 0.9208 21 6 -4.4391 -9.6413 -0.0249 22 6 -5.6416 -10.4988 0.0466 23 6 -6.5609 -10.5057 -1.0034 24 6 -7.6806 -11.3085 -0.9306 25 6 -7.8933 -12.1051 0.1805 26 6 -6.9890 -12.0981 1.2275 27 6 -5.8624 -11.3043 1.1648 28 8 -4.0958 -8.8174 -1.0305 29 7 -3.0554 -8.2447 -0.8047 30 6 0.6173 -5.2489 1.4045 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3880 -0.0016 33 1 2.6847 -3.7152 0.8872 34 1 2.6847 -3.7137 -0.8927 35 1 2.7588 -6.2222 0.2334 36 1 1.6161 -6.6532 -1.1117 37 1 -0.8172 -6.8680 -0.5663 38 1 -3.3884 -10.0284 1.8734 39 1 -6.3964 -9.8839 -1.8708 40 1 -8.3930 -11.3145 -1.7423 41 1 -8.7716 -12.7314 0.2327 42 1 -7.1631 -12.7189 2.0940 43 1 -5.1549 -11.3031 1.9808 44 1 -0.3955 -4.9344 1.6562 45 1 1.3415 -5.0111 2.1838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277008613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:35 Heat of formation + Delta-G solvation = 85.347618 kcal Electronic energy + Delta-G solvation = -27301.184794 eV Core-core repulsion = 23287.973400 eV Total energy + Delta-G solvation = -4013.211394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.39043 -40.26453 -39.60303 -38.38816 -34.60434 -34.48272 -33.80028 -32.95704 -31.51480 -30.82937 -29.99546 -27.07338 -25.53277 -25.29528 -24.24096 -23.48929 -22.87792 -22.33603 -21.43383 -20.53474 -19.15729 -18.75051 -18.14582 -17.25919 -16.98704 -16.83028 -16.02326 -15.77431 -15.39331 -15.08414 -14.91431 -14.61903 -14.30088 -14.04878 -13.98739 -13.81321 -13.64426 -13.49721 -13.33425 -12.80367 -12.40967 -12.20379 -12.12103 -11.82254 -11.70132 -11.59322 -11.04055 -10.84409 -10.83272 -10.77492 -10.60947 -10.35386 -10.34116 -10.08325 -9.83178 -9.61172 -9.52925 -9.13449 -8.87857 -8.83657 -6.88175 -5.73954 -3.02198 0.09176 0.83694 0.94579 1.65870 2.39312 2.70405 2.91920 3.28142 3.44843 3.50209 3.52677 3.60924 3.97331 4.33154 4.40967 4.51431 4.59143 4.60178 4.63077 4.74186 4.78799 4.81372 4.90802 5.06515 5.09004 5.11784 5.28612 5.43872 5.47739 5.60130 5.66088 5.84261 5.86032 5.86651 5.91874 5.94193 5.97860 6.10341 6.20141 6.27111 6.33888 6.41518 6.57328 6.79591 6.93710 7.20650 7.62526 7.72708 7.88956 8.45117 9.56145 10.15489 10.49812 11.49080 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018557 B = 0.001722 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.542139 B =16258.850790 C =17196.696288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.163 3.837 11 C -0.114 4.114 12 H 0.088 0.912 13 C -0.137 4.137 14 C 0.113 3.887 15 H 0.103 0.897 16 N -0.691 5.691 17 C 0.602 3.398 18 O -0.522 6.522 19 C -0.020 4.020 20 C -0.165 4.165 21 C 0.009 3.991 22 C -0.024 4.024 23 C -0.092 4.092 24 C -0.118 4.118 25 C -0.105 4.105 26 C -0.118 4.118 27 C -0.089 4.089 28 O 0.132 5.868 29 N -0.325 5.325 30 C -0.138 4.138 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.021 0.979 34 H 0.019 0.981 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.409 0.591 38 H 0.184 0.816 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.069 0.931 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.676 -29.473 -0.372 32.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.133 4.133 12 H 0.106 0.894 13 C -0.175 4.175 14 C 0.009 3.991 15 H 0.121 0.879 16 N -0.342 5.342 17 C 0.385 3.615 18 O -0.396 6.396 19 C -0.179 4.179 20 C -0.188 4.188 21 C -0.053 4.053 22 C -0.025 4.025 23 C -0.111 4.111 24 C -0.136 4.136 25 C -0.124 4.124 26 C -0.135 4.135 27 C -0.107 4.107 28 O 0.054 5.946 29 N -0.023 5.023 30 C -0.176 4.176 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.244 0.756 38 H 0.201 0.799 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.088 0.912 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.754 -28.754 -0.504 31.879 hybrid contribution -0.133 0.816 0.198 0.850 sum -13.887 -27.938 -0.306 31.201 Atomic orbital electron populations 1.69674 1.05119 1.25466 1.57998 1.24748 0.95525 0.97702 1.03173 0.86116 0.78778 0.84156 0.77159 1.20559 1.21905 1.21897 1.19299 0.91069 0.84261 1.42337 0.91154 1.42358 1.05853 1.00003 1.89387 1.20633 0.92960 0.85175 0.97719 1.22780 0.99196 0.94290 0.97035 0.89376 1.23321 0.98829 0.96564 0.98831 1.22063 0.83845 0.96340 0.96884 0.87855 1.45552 1.23356 1.42674 1.22573 1.16802 0.81134 0.79114 0.84446 1.90802 1.70854 1.58419 1.19543 1.23389 0.99849 1.01362 0.93274 1.22583 0.92926 1.01053 1.02191 1.22466 0.97546 0.96493 0.88829 1.17584 0.91305 0.96974 0.96635 1.21343 0.93480 0.98412 0.97834 1.21152 0.97426 0.96403 0.98614 1.21386 0.99173 0.98274 0.93531 1.21106 0.94067 0.99178 0.99198 1.21161 0.97912 0.95046 0.96593 1.84870 1.29388 1.41698 1.38663 1.74181 0.96493 1.14682 1.16981 1.23426 1.02684 0.93638 0.97871 0.93614 0.78335 0.96148 0.96349 0.88388 0.91129 0.75590 0.79865 0.84815 0.85174 0.85476 0.85092 0.85050 0.91219 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.93 5.60 -59.91 -0.34 -19.27 16 10 C 0.16 3.28 6.10 -4.04 -0.02 3.26 16 11 C -0.11 -1.82 3.63 -89.80 -0.33 -2.15 16 12 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 13 C -0.14 -1.70 7.39 -25.92 -0.19 -1.89 16 14 C 0.11 1.49 4.32 -67.11 -0.29 1.20 16 15 H 0.10 1.37 7.46 -51.93 -0.39 0.98 16 16 N -0.69 -8.95 5.26 -53.80 -0.28 -9.23 16 17 C 0.60 8.41 7.85 -12.10 -0.09 8.31 16 18 O -0.52 -8.50 16.55 5.37 0.09 -8.41 16 19 C -0.02 -0.25 7.18 -82.62 -0.59 -0.85 16 20 C -0.17 -1.66 10.34 -38.73 -0.40 -2.06 16 21 C 0.01 0.09 7.15 -36.20 -0.26 -0.17 16 22 C -0.02 -0.18 5.87 -104.97 -0.62 -0.79 16 23 C -0.09 -0.59 9.73 -39.19 -0.38 -0.97 16 24 C -0.12 -0.59 10.03 -39.64 -0.40 -0.99 16 25 C -0.11 -0.48 10.04 -39.49 -0.40 -0.87 16 26 C -0.12 -0.57 10.03 -39.64 -0.40 -0.96 16 27 C -0.09 -0.53 9.58 -39.19 -0.38 -0.91 16 28 O 0.13 1.40 11.01 16.05 0.18 1.57 16 29 N -0.32 -3.96 11.82 33.35 0.39 -3.56 16 30 C -0.14 -2.10 7.43 -25.91 -0.19 -2.29 16 31 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 33 H 0.02 0.42 7.84 -51.93 -0.41 0.01 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.41 4.92 8.46 -40.82 -0.35 4.58 16 38 H 0.18 1.47 7.46 -52.48 -0.39 1.07 16 39 H 0.13 0.72 7.96 -52.49 -0.42 0.30 16 40 H 0.13 0.39 8.06 -52.49 -0.42 -0.04 16 41 H 0.13 0.30 8.06 -52.49 -0.42 -0.12 16 42 H 0.13 0.36 8.06 -52.48 -0.42 -0.06 16 43 H 0.13 0.61 7.15 -52.49 -0.38 0.23 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.09 1.43 7.90 -51.93 -0.41 1.02 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -34.12 389.22 -9.55 -43.67 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -5.97 Total: 9.36 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -5.18 Total: -9.67 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.50 Total: -60.16 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: 0.27 Total: -6.84 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.12 -9.55 -43.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277008613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.016 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds