Wall clock time and date at job start Sat Apr 11 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99964 * 2 1 4 4 H 1.48497 * 109.46961 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47028 * 300.00208 * 3 2 1 6 6 H 1.48492 * 109.46915 * 60.00326 * 3 2 1 7 7 C 1.38817 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99692 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99646 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46851 * 179.97438 * 10 9 7 12 12 H 1.08996 * 112.85065 * 43.80808 * 11 10 9 13 13 C 1.53783 * 113.61230 * 175.00180 * 11 10 9 14 14 C 1.53782 * 87.08361 * 139.98044 * 13 11 10 15 15 H 1.08997 * 113.61381 * 219.93746 * 14 13 11 16 16 N 1.46501 * 113.61383 * 89.11302 * 14 13 11 17 17 C 1.34776 * 119.99936 * 155.00097 * 16 14 13 18 18 O 1.21491 * 119.99987 * 0.02562 * 17 16 14 19 19 C 1.48345 * 119.99832 * 180.02562 * 17 16 14 20 20 C 1.41917 * 126.84293 * 180.28184 * 19 17 16 21 21 C 1.36708 * 103.81605 * 180.13509 * 20 19 17 22 22 C 1.47856 * 126.82006 * 179.87316 * 21 20 19 23 23 C 1.39558 * 120.14506 * 179.70978 * 22 21 20 24 24 C 1.37967 * 119.85599 * 179.97438 * 23 22 21 25 25 C 1.38361 * 120.14049 * 0.02562 * 24 23 22 26 26 C 1.38352 * 120.28854 * 0.27591 * 25 24 23 27 27 C 1.37960 * 120.14862 * 359.44542 * 26 25 24 28 28 O 1.34462 * 106.36690 * 359.60992 * 21 20 19 29 29 N 1.20881 * 111.73821 * 0.26570 * 28 21 20 30 30 C 1.53787 * 113.61435 * 272.49727 * 11 10 9 31 31 H 0.97003 * 119.99860 * 359.97438 * 1 2 3 32 32 H 0.96997 * 119.99793 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.46658 * 59.99856 * 10 9 7 34 34 H 1.08995 * 109.47347 * 299.99963 * 10 9 7 35 35 H 1.09003 * 113.61522 * 25.43164 * 13 11 10 36 36 H 1.08995 * 113.61584 * 254.53017 * 13 11 10 37 37 H 0.96997 * 119.99532 * 335.00712 * 16 14 13 38 38 H 1.08006 * 128.09111 * 0.02562 * 20 19 17 39 39 H 1.07994 * 120.07563 * 359.95692 * 23 22 21 40 40 H 1.08002 * 119.93106 * 179.97438 * 24 23 22 41 41 H 1.08002 * 119.85061 * 179.97438 * 25 24 23 42 42 H 1.08003 * 119.92410 * 179.71840 * 26 25 24 43 43 H 1.07995 * 120.08070 * 180.27419 * 27 26 25 44 44 H 1.08998 * 113.61137 * 105.47386 * 30 11 10 45 45 H 1.09001 * 113.61663 * 334.56968 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0638 -4.8197 -0.0031 12 1 0.2375 -4.6699 -0.6980 13 6 1.7304 -6.2000 -0.1271 14 6 0.7052 -6.7005 0.9041 15 1 1.1237 -7.3914 1.6359 16 7 -0.5385 -7.1908 0.3049 17 6 -1.2951 -8.0906 0.9640 18 8 -0.9460 -8.4947 2.0553 19 6 -2.5541 -8.5876 0.3569 20 6 -3.4589 -9.5243 0.9208 21 6 -4.4391 -9.6413 -0.0249 22 6 -5.6416 -10.4988 0.0466 23 6 -6.5609 -10.5057 -1.0034 24 6 -7.6806 -11.3085 -0.9306 25 6 -7.8933 -12.1051 0.1805 26 6 -6.9890 -12.0981 1.2275 27 6 -5.8624 -11.3043 1.1648 28 8 -4.0958 -8.8174 -1.0305 29 7 -3.0554 -8.2447 -0.8047 30 6 0.6173 -5.2489 1.4045 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3880 -0.0016 33 1 2.6847 -3.7152 0.8872 34 1 2.6847 -3.7137 -0.8927 35 1 2.7588 -6.2222 0.2334 36 1 1.6161 -6.6532 -1.1117 37 1 -0.8172 -6.8680 -0.5663 38 1 -3.3884 -10.0284 1.8734 39 1 -6.3964 -9.8839 -1.8708 40 1 -8.3930 -11.3145 -1.7423 41 1 -8.7716 -12.7314 0.2327 42 1 -7.1631 -12.7189 2.0940 43 1 -5.1549 -11.3031 1.9808 44 1 -0.3955 -4.9344 1.6562 45 1 1.3415 -5.0111 2.1838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277008613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:34 Heat of formation + Delta-G solvation = 64.291595 kcal Electronic energy + Delta-G solvation = -27302.097852 eV Core-core repulsion = 23287.973400 eV Total energy + Delta-G solvation = -4014.124452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.24021 -41.40442 -40.01354 -39.59589 -36.39673 -35.36686 -34.75575 -34.04957 -32.77331 -31.90295 -30.59870 -28.70222 -26.69252 -26.45727 -25.06746 -24.86816 -23.72586 -22.92145 -22.90364 -21.43963 -20.41917 -19.44983 -19.09210 -19.00952 -18.14787 -17.35331 -17.10518 -16.72285 -16.40001 -16.22574 -15.99570 -15.78357 -15.66262 -15.19694 -15.05274 -14.86675 -14.51259 -14.33082 -14.29023 -13.94211 -13.78713 -13.45027 -13.16612 -12.96632 -12.92545 -12.76523 -12.28485 -12.14121 -11.97428 -11.96062 -11.87215 -11.73020 -11.53582 -11.42643 -11.41607 -11.20417 -10.89689 -10.25829 -9.92049 -9.42802 -8.99816 -7.96659 -5.25309 -0.51324 0.04751 0.44954 1.04699 1.45776 1.46894 1.57153 1.59919 1.76609 1.88975 2.54762 2.69908 2.86338 3.24517 3.36371 3.50118 3.54071 3.69900 3.86087 3.88796 3.93784 3.97626 4.05383 4.10845 4.29661 4.31491 4.48943 4.51050 4.62610 4.67656 4.70649 4.78336 4.80675 4.87065 4.93905 4.94178 5.09010 5.10718 5.19215 5.27687 5.42697 5.46982 5.48905 5.56679 5.57167 5.97545 6.15470 6.26016 6.74002 6.86558 7.31679 8.09548 8.31621 9.27292 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018557 B = 0.001722 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.542139 B =16258.850790 C =17196.696288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.115 4.115 12 H 0.078 0.922 13 C -0.115 4.115 14 C 0.123 3.877 15 H 0.108 0.892 16 N -0.687 5.687 17 C 0.602 3.398 18 O -0.549 6.549 19 C -0.038 4.038 20 C -0.175 4.175 21 C 0.025 3.975 22 C -0.049 4.049 23 C -0.102 4.102 24 C -0.124 4.124 25 C -0.102 4.102 26 C -0.122 4.122 27 C -0.094 4.094 28 O 0.132 5.868 29 N -0.341 5.341 30 C -0.140 4.140 31 H 0.250 0.750 32 H 0.372 0.628 33 H 0.025 0.975 34 H 0.022 0.978 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.413 0.587 38 H 0.200 0.800 39 H 0.136 0.864 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.141 0.859 44 H 0.049 0.951 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.856 -31.275 -0.479 34.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.377 4.377 8 H 0.095 0.905 9 N -0.389 5.389 10 C 0.034 3.966 11 C -0.133 4.133 12 H 0.097 0.903 13 C -0.153 4.153 14 C 0.018 3.982 15 H 0.126 0.874 16 N -0.337 5.337 17 C 0.386 3.614 18 O -0.425 6.425 19 C -0.195 4.195 20 C -0.197 4.197 21 C -0.038 4.038 22 C -0.050 4.050 23 C -0.121 4.121 24 C -0.141 4.141 25 C -0.120 4.120 26 C -0.140 4.140 27 C -0.113 4.113 28 O 0.054 5.946 29 N -0.040 5.040 30 C -0.179 4.179 31 H 0.059 0.941 32 H 0.203 0.797 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.134 0.866 36 H 0.107 0.893 37 H 0.249 0.751 38 H 0.217 0.783 39 H 0.154 0.846 40 H 0.168 0.832 41 H 0.170 0.830 42 H 0.171 0.829 43 H 0.159 0.841 44 H 0.068 0.932 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.895 -30.582 -0.630 33.596 hybrid contribution -0.188 1.262 0.224 1.295 sum -14.083 -29.320 -0.406 32.529 Atomic orbital electron populations 1.69836 1.06721 1.25963 1.59747 1.25611 0.96423 1.01263 1.03817 0.85041 0.78280 0.79621 0.76637 1.18856 1.22003 1.22085 1.19731 0.91597 0.85477 1.40891 0.90498 1.42604 1.05562 1.01365 1.89323 1.20828 0.93656 0.84341 0.97743 1.22698 0.98544 0.94657 0.97438 0.90326 1.23249 0.99187 0.93197 0.99651 1.21956 0.84103 0.94968 0.97168 0.87355 1.45560 1.23267 1.42293 1.22627 1.16997 0.81460 0.78823 0.84093 1.90775 1.71665 1.59466 1.20642 1.23333 0.99841 1.02468 0.93894 1.22791 0.92691 1.01102 1.03108 1.22818 0.97700 0.95500 0.87792 1.17715 0.91223 0.98034 0.98021 1.21516 0.93918 0.98901 0.97755 1.21447 0.97222 0.95947 0.99531 1.21775 0.99649 0.97692 0.92881 1.21439 0.93482 0.98942 1.00119 1.21395 0.98670 0.94815 0.96383 1.84832 1.28892 1.41795 1.39109 1.74164 0.97187 1.15482 1.17195 1.23435 1.01516 0.95410 0.97548 0.94075 0.79698 0.95680 0.95963 0.86571 0.89339 0.75073 0.78266 0.84580 0.83194 0.82984 0.82859 0.84083 0.93232 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.13 13.06 21.65 0.28 -60.84 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 3 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 7 C -0.25 -14.05 9.99 84.03 0.84 -13.21 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.75 -39.01 5.60 -343.46 -1.92 -40.93 16 10 C 0.16 6.40 6.10 86.38 0.53 6.92 16 11 C -0.11 -3.60 3.63 -10.26 -0.04 -3.64 16 12 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 13 C -0.11 -2.62 7.39 31.12 0.23 -2.39 16 14 C 0.12 3.11 4.32 45.52 0.20 3.31 16 15 H 0.11 2.73 7.46 -2.39 -0.02 2.71 16 16 N -0.69 -17.68 5.26 -442.42 -2.33 -20.00 16 17 C 0.60 16.97 7.85 86.93 0.68 17.65 16 18 O -0.55 -17.98 16.55 -3.69 -0.06 -18.04 16 19 C -0.04 -0.96 7.18 42.86 0.31 -0.65 16 20 C -0.17 -3.51 10.34 22.82 0.24 -3.28 16 21 C 0.02 0.45 7.15 24.46 0.17 0.63 16 22 C -0.05 -0.69 5.87 -20.09 -0.12 -0.81 16 23 C -0.10 -1.22 9.73 22.52 0.22 -1.00 16 24 C -0.12 -1.00 10.03 22.23 0.22 -0.77 16 25 C -0.10 -0.66 10.04 22.33 0.22 -0.43 16 26 C -0.12 -0.90 10.03 22.23 0.22 -0.67 16 27 C -0.09 -1.01 9.58 22.53 0.22 -0.79 16 28 O 0.13 2.84 11.01 67.62 0.74 3.58 16 29 N -0.34 -8.48 11.82 -49.00 -0.58 -9.06 16 30 C -0.14 -4.28 7.43 31.12 0.23 -4.05 16 31 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.37 20.83 7.67 -92.71 -0.71 20.12 16 33 H 0.03 0.99 7.84 -2.39 -0.02 0.97 16 34 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.12 2.30 8.10 -2.39 -0.02 2.28 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.41 9.92 8.46 -92.71 -0.78 9.14 16 38 H 0.20 3.13 7.46 -2.91 -0.02 3.11 16 39 H 0.14 1.43 7.96 -2.91 -0.02 1.40 16 40 H 0.15 0.54 8.06 -2.91 -0.02 0.52 16 41 H 0.15 0.19 8.06 -2.91 -0.02 0.17 16 42 H 0.15 0.39 8.06 -2.91 -0.02 0.36 16 43 H 0.14 1.13 7.15 -2.91 -0.02 1.10 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.10 2.87 7.90 -2.39 -0.02 2.85 16 Total: -1.00 -73.87 389.22 2.55 -71.32 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: -0.46 Total: 32.24 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 4.84 Total: -7.38 kcal Atomic # 7 Polarization: -126.29 SS G_CDS: -4.55 Total: -130.84 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.68 Total: -14.46 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -73.87 2.55 -71.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277008613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.609 kcal (2) G-P(sol) polarization free energy of solvation -73.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds