Wall clock time and date at job start Sat Apr 11 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00089 * 2 1 4 4 H 1.48501 * 109.47072 * 269.99964 * 3 2 1 5 5 H 1.48494 * 109.47336 * 30.00300 * 3 2 1 6 6 H 1.48505 * 109.47172 * 150.00271 * 3 2 1 7 7 C 1.38816 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00035 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99650 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99889 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47030 * 180.02562 * 10 9 7 12 12 C 1.38235 * 119.99971 * 90.00237 * 11 10 9 13 13 C 1.38235 * 120.00301 * 179.97438 * 12 11 10 14 14 C 1.38234 * 119.99375 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99706 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.46793 * 90.00016 * 15 14 13 17 17 C 1.34783 * 120.00013 * 180.02562 * 16 15 14 18 18 O 1.21615 * 119.99834 * 0.02562 * 17 16 15 19 19 C 1.47416 * 119.99866 * 180.02562 * 17 16 15 20 20 N 1.36062 * 126.45058 * 0.04052 * 19 17 16 21 21 C 1.29941 * 108.47645 * 179.97438 * 20 19 17 22 22 O 1.34044 * 109.24268 * 0.02562 * 21 20 19 23 23 C 1.34259 * 108.23035 * 359.97438 * 22 21 20 24 24 C 1.50697 * 126.52483 * 180.26758 * 23 22 21 25 25 C 1.52992 * 117.50368 * 8.43062 * 24 23 22 26 26 C 1.53003 * 117.49961 * 299.77039 * 24 23 22 27 27 C 1.38228 * 120.00382 * 0.25444 * 14 13 12 28 28 C 1.38227 * 120.00005 * 270.01952 * 11 10 9 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99913 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47041 * 60.00322 * 10 9 7 32 32 H 1.09005 * 109.47209 * 300.00370 * 10 9 7 33 33 H 1.08007 * 120.00153 * 359.97438 * 12 11 10 34 34 H 1.07999 * 120.00056 * 180.02562 * 13 12 11 35 35 H 1.09008 * 109.46933 * 330.00475 * 15 14 13 36 36 H 1.08991 * 109.47379 * 209.99998 * 15 14 13 37 37 H 0.96995 * 120.00206 * 0.02562 * 16 15 14 38 38 H 1.08000 * 125.37774 * 179.97438 * 21 20 19 39 39 H 1.09007 * 115.54788 * 154.10671 * 24 23 22 40 40 H 1.09000 * 117.49718 * 0.02562 * 25 24 23 41 41 H 1.08999 * 117.50165 * 145.01815 * 25 24 23 42 42 H 1.08995 * 117.49994 * 214.98509 * 26 24 23 43 43 H 1.09003 * 117.49480 * 359.97438 * 26 24 23 44 44 H 1.08006 * 119.99775 * 179.72453 * 27 14 13 45 45 H 1.07998 * 120.00400 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0786 -4.8022 -0.0012 12 6 0.6300 -5.3273 -1.1986 13 6 -0.2679 -6.3783 -1.1993 14 6 -0.7176 -6.9038 -0.0024 15 6 -1.6969 -8.0493 -0.0030 16 7 -0.9644 -9.3180 -0.0030 17 6 -1.6382 -10.4853 -0.0040 18 8 -2.8544 -10.4853 -0.0055 19 6 -0.9011 -11.7619 -0.0034 20 7 0.4509 -11.9147 -0.0010 21 6 0.7217 -13.1856 -0.0007 22 8 -0.4240 -13.8814 -0.0033 23 6 -1.4449 -13.0095 -0.0048 24 6 -2.9134 -13.3479 -0.0022 25 6 -3.3002 -14.8140 0.2015 26 6 -3.4518 -14.1667 -1.1773 27 6 -0.2734 -6.3750 1.1950 28 6 0.6287 -5.3275 1.1956 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.6846 -3.7145 0.8895 32 1 2.6847 -3.7145 -0.8905 33 1 0.9810 -4.9164 -2.1338 34 1 -0.6181 -6.7888 -2.1348 35 1 -2.3232 -7.9914 -0.8934 36 1 -2.3239 -7.9917 0.8866 37 1 0.0056 -9.3180 -0.0022 38 1 1.7133 -13.6136 0.0006 39 1 -3.5697 -12.5900 0.4257 40 1 -2.4925 -15.5338 0.3341 41 1 -4.2111 -15.0208 0.7632 42 1 -4.4623 -13.9478 -1.5221 43 1 -2.7438 -14.4602 -1.9524 44 1 -0.6282 -6.7827 2.1301 45 1 0.9787 -4.9169 2.1312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319006900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:45 Heat of formation + Delta-G solvation = 49.707139 kcal Electronic energy + Delta-G solvation = -27301.254874 eV Core-core repulsion = 23286.497992 eV Total energy + Delta-G solvation = -4014.756881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.89118 -39.91173 -39.00674 -37.69492 -35.54013 -35.23531 -34.29256 -32.07688 -30.81781 -30.69217 -30.10531 -27.29156 -25.09104 -24.18260 -23.77188 -22.91324 -22.46568 -22.34490 -21.31042 -20.76694 -20.40283 -18.65638 -17.28586 -17.26863 -16.92772 -16.38116 -16.08460 -15.66685 -15.46533 -15.27661 -14.77230 -14.77038 -14.54047 -14.10561 -13.88723 -13.37384 -13.19568 -13.14959 -12.90557 -12.81954 -12.31436 -12.11087 -12.06415 -11.82644 -11.77626 -11.52905 -11.40721 -11.08147 -10.97619 -10.85482 -10.71676 -10.59044 -10.34886 -10.06189 -9.77432 -9.39199 -9.09667 -8.90312 -8.65979 -8.42372 -6.94293 -5.76619 -3.06506 0.63825 1.41285 1.64824 1.67259 2.05687 2.96980 2.99101 3.33930 3.43696 3.48531 3.50543 3.62768 3.88084 4.03307 4.28221 4.38821 4.52612 4.61584 4.65512 4.71807 4.97481 5.07114 5.11301 5.16218 5.21498 5.34534 5.36661 5.39779 5.54276 5.55861 5.56903 5.62077 5.71887 5.76936 5.87334 6.15933 6.17355 6.19138 6.22781 6.50442 6.59601 6.65319 6.71990 6.95928 7.12036 7.24367 7.35331 7.68841 7.92716 8.41088 9.52677 10.08814 10.44629 11.45829 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.032277 B = 0.001635 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.280921 B =17116.860875 C =17603.505152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.726 5.726 10 C 0.184 3.816 11 C -0.063 4.063 12 C -0.106 4.106 13 C -0.102 4.102 14 C -0.125 4.125 15 C 0.166 3.834 16 N -0.705 5.705 17 C 0.602 3.398 18 O -0.536 6.536 19 C -0.070 4.070 20 N -0.461 5.461 21 C 0.176 3.824 22 O -0.199 6.199 23 C 0.075 3.925 24 C -0.087 4.087 25 C -0.169 4.169 26 C -0.156 4.156 27 C -0.102 4.102 28 C -0.106 4.106 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.411 0.589 38 H 0.257 0.743 39 H 0.157 0.843 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.119 0.881 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.309 -33.259 -0.289 33.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.371 5.371 10 C 0.057 3.943 11 C -0.064 4.064 12 C -0.125 4.125 13 C -0.121 4.121 14 C -0.126 4.126 15 C 0.044 3.956 16 N -0.356 5.356 17 C 0.387 3.613 18 O -0.413 6.413 19 C -0.190 4.190 20 N -0.189 5.189 21 C -0.052 4.052 22 O -0.086 6.086 23 C 0.018 3.982 24 C -0.105 4.105 25 C -0.206 4.206 26 C -0.193 4.193 27 C -0.120 4.120 28 C -0.125 4.125 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.247 0.753 38 H 0.272 0.728 39 H 0.174 0.826 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.116 0.884 44 H 0.137 0.863 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.597 -32.619 -0.282 32.818 hybrid contribution 0.483 0.525 -0.005 0.713 sum -3.114 -32.094 -0.287 32.246 Atomic orbital electron populations 1.69675 1.05134 1.25702 1.57419 1.24763 0.95537 0.97715 1.02851 0.86166 0.78626 0.83708 0.77527 1.21683 1.21744 1.20723 1.19248 0.91076 0.83972 1.43110 0.91053 1.42337 1.05948 0.99281 1.89529 1.19710 0.91883 0.83943 0.98754 1.20389 0.97141 0.96065 0.92802 1.21117 0.97276 0.95882 0.98223 1.20985 0.97342 0.96668 0.97059 1.19640 1.00502 0.98549 0.93905 1.20226 0.92660 0.79600 1.03146 1.45932 1.11258 1.04762 1.73650 1.16682 0.86127 0.81876 0.76605 1.90787 1.12501 1.86961 1.51088 1.21407 0.89523 0.94596 1.13434 1.70774 1.13299 1.18432 1.16432 1.28039 0.90817 0.85502 1.00847 1.84336 1.15565 1.39163 1.69502 1.22633 0.89492 0.86928 0.99143 1.20807 0.85817 0.97225 1.06609 1.23114 1.03954 0.93617 0.99880 1.23099 1.03078 1.01635 0.91532 1.20986 0.97319 0.96691 0.97051 1.21115 0.97229 0.95921 0.98231 0.93463 0.78044 0.95368 0.95382 0.85797 0.86319 0.90427 0.90433 0.75316 0.72769 0.82585 0.88078 0.87382 0.87146 0.88387 0.86315 0.85794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.72 5.59 -61.09 -0.34 -19.06 16 10 C 0.18 3.78 6.38 -5.19 -0.03 3.75 16 11 C -0.06 -1.10 5.25 -104.63 -0.55 -1.65 16 12 C -0.11 -1.68 9.70 -39.58 -0.38 -2.07 16 13 C -0.10 -1.39 9.70 -39.58 -0.38 -1.77 16 14 C -0.13 -1.62 5.25 -104.63 -0.55 -2.17 16 15 C 0.17 1.92 5.80 -5.19 -0.03 1.89 16 16 N -0.71 -7.99 5.55 -62.56 -0.35 -8.33 16 17 C 0.60 7.43 7.81 -12.52 -0.10 7.33 16 18 O -0.54 -7.55 14.88 5.26 0.08 -7.48 16 19 C -0.07 -0.77 6.99 -83.02 -0.58 -1.35 16 20 N -0.46 -4.52 11.06 -11.48 -0.13 -4.64 16 21 C 0.18 1.14 13.19 51.96 0.69 1.83 16 22 O -0.20 -1.56 10.50 6.52 0.07 -1.49 16 23 C 0.07 0.71 6.90 -35.08 -0.24 0.47 16 24 C -0.09 -0.70 5.60 -91.78 -0.51 -1.21 16 25 C -0.17 -0.93 10.18 -26.70 -0.27 -1.21 16 26 C -0.16 -0.95 10.24 -26.69 -0.27 -1.23 16 27 C -0.10 -1.39 9.70 -39.58 -0.38 -1.77 16 28 C -0.11 -1.68 9.70 -39.59 -0.38 -2.07 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.39 10.61 7.66 -40.82 -0.31 10.29 16 31 H 0.03 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.03 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 34 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.08 0.90 8.09 -51.92 -0.42 0.48 16 36 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 37 H 0.41 4.46 8.19 -40.82 -0.33 4.12 16 38 H 0.26 0.30 8.06 -52.49 -0.42 -0.12 16 39 H 0.16 1.42 6.67 -51.92 -0.35 1.08 16 40 H 0.10 0.53 8.00 -51.93 -0.42 0.12 16 41 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 45 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 393.12 15.07 5.92 5.92 Total: -1.00 -34.01 393.12 -9.30 -43.31 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.02 Total: 10.76 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -4.24 Total: -8.70 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.09 Total: -59.78 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.15 Total: -8.96 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.01 -9.30 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319006900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.014 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds