Wall clock time and date at job start Sat Apr 11 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86797 * 120.00212 * 2 1 4 4 H 1.48500 * 109.47067 * 240.00265 * 3 2 1 5 5 H 1.48496 * 109.47391 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46899 * 120.00479 * 3 2 1 7 7 C 1.40024 * 119.99370 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.41312 * 120.00321 * 359.97438 * 7 2 1 10 10 C 1.40594 * 119.78416 * 179.97438 * 9 7 2 11 11 C 1.38350 * 119.14535 * 180.02562 * 10 9 7 12 12 C 1.38641 * 118.68180 * 0.02562 * 11 10 9 13 13 C 1.39751 * 119.49178 * 359.97438 * 12 11 10 14 14 N 1.38827 * 119.58614 * 179.97438 * 13 12 11 15 15 C 1.46507 * 119.99596 * 359.97438 * 14 13 12 16 16 C 1.53003 * 109.46777 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.46628 * 180.02562 * 16 15 14 18 18 N 1.46497 * 109.46756 * 180.02562 * 17 16 15 19 19 C 1.34780 * 120.00238 * 179.97438 * 18 17 16 20 20 O 1.21552 * 119.99425 * 359.97438 * 19 18 17 21 21 C 1.47856 * 120.00158 * 179.97438 * 19 18 17 22 22 C 1.39605 * 120.11992 * 359.97438 * 21 19 18 23 23 C 1.37968 * 119.96340 * 180.02562 * 22 21 19 24 24 C 1.38288 * 120.20894 * 359.72208 * 23 22 21 25 25 C 1.38807 * 120.23481 * 0.55105 * 24 23 22 26 26 O 1.35915 * 119.98280 * 179.72830 * 25 24 23 27 27 C 1.38493 * 120.03360 * 359.44996 * 25 24 23 28 28 N 1.31983 * 120.83169 * 0.25921 * 13 12 11 29 29 H 0.97006 * 119.99400 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.42710 * 0.02562 * 10 9 7 31 31 H 1.08004 * 120.65438 * 179.97438 * 11 10 9 32 32 H 1.07997 * 120.25255 * 180.02562 * 12 11 10 33 33 H 0.96994 * 120.00463 * 180.02562 * 14 13 12 34 34 H 1.08997 * 109.46864 * 60.00226 * 15 14 13 35 35 H 1.08997 * 109.47148 * 299.99992 * 15 14 13 36 36 H 1.09000 * 109.47123 * 59.99913 * 16 15 14 37 37 H 1.08997 * 109.47061 * 299.99783 * 16 15 14 38 38 H 1.09000 * 109.47583 * 60.00019 * 17 16 15 39 39 H 1.08997 * 109.47079 * 299.99596 * 17 16 15 40 40 H 0.97006 * 120.00242 * 0.02562 * 18 17 16 41 41 H 1.08000 * 120.01627 * 359.97438 * 22 21 19 42 42 H 1.07999 * 119.89106 * 180.02562 * 23 22 21 43 43 H 1.07996 * 119.88253 * 180.27482 * 24 23 22 44 44 H 0.96705 * 113.99582 * 269.72538 * 26 25 24 45 45 H 1.08006 * 120.10478 * 180.25071 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2767 2.7464 0.0006 6 1 3.0954 1.6962 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0010 9 6 1.3008 -2.4365 -0.0005 10 6 2.0083 -3.6514 -0.0016 11 6 1.3032 -4.8418 -0.0022 12 6 -0.0824 -4.7943 -0.0021 13 6 -0.7284 -3.5551 -0.0010 14 7 -2.1158 -3.5053 -0.0015 15 6 -2.8932 -4.7471 -0.0038 16 6 -4.3865 -4.4138 -0.0046 17 6 -5.1984 -5.7106 -0.0063 18 7 -6.6282 -5.3915 -0.0076 19 6 -7.5402 -6.3839 -0.0098 20 8 -7.1763 -7.5436 -0.0110 21 6 -8.9832 -6.0618 -0.0105 22 6 -9.4039 -4.7306 -0.0085 23 6 -10.7513 -4.4337 -0.0087 24 6 -11.6879 -5.4511 -0.0167 25 6 -11.2791 -6.7776 -0.0131 26 8 -12.2041 -7.7734 -0.0154 27 6 -9.9292 -7.0869 -0.0129 28 7 -0.0361 -2.4314 -0.0052 29 1 -0.4849 0.8401 0.0004 30 1 3.0882 -3.6555 -0.0021 31 1 1.8219 -5.7891 -0.0034 32 1 -0.6581 -5.7081 -0.0021 33 1 -2.5704 -2.6485 -0.0012 34 1 -2.6509 -5.3290 0.8854 35 1 -2.6501 -5.3263 -0.8945 36 1 -4.6285 -3.8320 -0.8940 37 1 -4.6299 -3.8343 0.8860 38 1 -4.9564 -6.2921 0.8834 39 1 -4.9551 -6.2904 -0.8966 40 1 -6.9186 -4.4659 -0.0077 41 1 -8.6750 -3.9337 -0.0060 42 1 -11.0754 -3.4035 -0.0076 43 1 -12.7412 -5.2127 -0.0214 44 1 -12.4723 -8.0631 0.8674 45 1 -9.6098 -8.1187 -0.0141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319180420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:47 Heat of formation + Delta-G solvation = -17.456428 kcal Electronic energy + Delta-G solvation = -26852.989339 eV Core-core repulsion = 22835.320027 eV Total energy + Delta-G solvation = -4017.669312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.71309 -39.35086 -38.30222 -37.01947 -36.39005 -34.80341 -33.35801 -32.03710 -31.28726 -30.37660 -30.06180 -28.50732 -25.65580 -25.28168 -23.77319 -22.99361 -22.08662 -21.24106 -20.92138 -20.28102 -19.08270 -17.47689 -17.32900 -16.77575 -16.45614 -16.14285 -16.07272 -15.56025 -15.49403 -14.86054 -14.79371 -14.71526 -14.30631 -14.21463 -13.84427 -13.31007 -13.18667 -12.95443 -12.76342 -12.66171 -12.27452 -12.12572 -12.08885 -11.81948 -11.46542 -11.29736 -11.21358 -11.03174 -11.00818 -10.62737 -10.42840 -10.25754 -9.93426 -9.59552 -9.48423 -9.35620 -9.21405 -8.89036 -7.90974 -7.51539 -6.52913 -6.33270 -4.47468 0.31129 0.72740 2.42375 2.74889 2.88864 3.09405 3.12509 3.23922 3.29450 3.30426 3.68832 3.97841 4.09947 4.22415 4.33701 4.54722 4.62908 4.82808 4.88126 4.89638 4.96261 5.04561 5.16558 5.36517 5.49706 5.55700 5.69864 5.75937 5.78744 5.83134 6.00691 6.02709 6.11813 6.16445 6.18219 6.19337 6.58343 6.85594 6.89742 6.94060 7.10986 7.15065 7.24724 7.59561 7.81114 7.86330 7.92090 8.16015 8.35687 8.66857 8.80030 9.11604 10.24134 10.39956 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.001604 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.085641 B =17453.940892 C =18853.703316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.435 4.435 8 H 0.082 0.918 9 C 0.292 3.708 10 C -0.316 4.316 11 C -0.032 4.032 12 C -0.367 4.367 13 C 0.410 3.590 14 N -0.740 5.740 15 C 0.146 3.854 16 C -0.142 4.142 17 C 0.122 3.878 18 N -0.723 5.723 19 C 0.556 3.444 20 O -0.533 6.533 21 C -0.116 4.116 22 C -0.095 4.095 23 C -0.109 4.109 24 C -0.122 4.122 25 C 0.098 3.902 26 O -0.496 6.496 27 C -0.087 4.087 28 N -0.531 5.531 29 H 0.269 0.731 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.395 0.605 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.401 0.599 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.393 0.607 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.680 -6.421 1.667 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.153 4.153 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.467 4.467 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.339 4.339 11 C -0.056 4.056 12 C -0.393 4.393 13 C 0.170 3.830 14 N -0.377 5.377 15 C 0.020 3.980 16 C -0.181 4.181 17 C -0.001 4.001 18 N -0.375 5.375 19 C 0.343 3.657 20 O -0.411 6.411 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.127 4.127 24 C -0.140 4.140 25 C 0.053 3.947 26 O -0.307 6.307 27 C -0.106 4.106 28 N -0.253 5.253 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.230 0.770 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.236 0.764 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.249 0.751 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -23.964 -6.482 1.050 24.847 hybrid contribution 0.431 0.611 0.488 0.893 sum -23.532 -5.871 1.538 24.303 Atomic orbital electron populations 1.70149 1.07137 1.27350 1.29269 1.26045 0.94870 1.00889 0.93542 0.86433 0.80106 0.80634 0.79847 1.19004 1.20385 1.19013 1.19547 0.94137 0.89403 1.43605 0.89938 1.18195 0.86908 0.91840 0.86545 1.21544 0.98438 0.93482 1.20433 1.20605 0.93457 0.96393 0.95185 1.20617 0.94645 0.95501 1.28525 1.18503 0.84212 0.90314 0.89963 1.44061 1.02816 1.06579 1.84249 1.20861 0.88103 0.88007 1.01039 1.21961 0.95438 0.97136 1.03531 1.21317 0.78259 0.97350 1.03195 1.45915 1.06806 1.09521 1.75223 1.18208 0.85552 0.85319 0.76592 1.90800 1.81411 1.19489 1.49383 1.19835 0.93101 0.93852 1.05154 1.21380 0.96621 0.95231 0.98176 1.21025 0.92354 0.99635 0.99710 1.21665 1.00838 0.92018 0.99502 1.18349 0.87716 0.87479 1.01135 1.84858 1.58797 1.53184 1.33821 1.21573 0.91467 1.00548 0.97019 1.68204 1.07683 1.24317 1.25074 0.91956 0.88698 0.88912 0.89144 0.77041 0.92748 0.92755 0.90578 0.90591 0.90756 0.90765 0.76351 0.85114 0.84670 0.84850 0.75097 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.88 11.46 55.55 0.64 -18.25 16 2 C 0.07 1.82 5.50 -17.34 -0.10 1.73 16 3 Si 0.91 18.62 29.56 -169.99 -5.02 13.59 16 4 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.43 -11.78 9.14 -37.74 -0.34 -12.13 16 8 H 0.08 2.09 7.85 -52.48 -0.41 1.68 16 9 C 0.29 8.16 6.55 -85.00 -0.56 7.60 16 10 C -0.32 -8.04 9.83 -38.65 -0.38 -8.42 16 11 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 12 C -0.37 -8.48 9.34 -38.87 -0.36 -8.84 16 13 C 0.41 9.93 7.65 -155.31 -1.19 8.75 16 14 N -0.74 -14.21 5.72 -60.39 -0.35 -14.56 16 15 C 0.15 2.11 4.88 -4.04 -0.02 2.09 16 16 C -0.14 -1.46 5.44 -26.73 -0.15 -1.61 16 17 C 0.12 1.23 5.67 -4.04 -0.02 1.21 16 18 N -0.72 -6.50 5.51 -61.25 -0.34 -6.84 16 19 C 0.56 6.22 7.77 -12.32 -0.10 6.13 16 20 O -0.53 -7.96 16.35 5.32 0.09 -7.87 16 21 C -0.12 -1.05 5.87 -104.99 -0.62 -1.67 16 22 C -0.10 -0.62 9.54 -39.17 -0.37 -0.99 16 23 C -0.11 -0.61 10.03 -39.66 -0.40 -1.00 16 24 C -0.12 -0.75 9.98 -39.35 -0.39 -1.14 16 25 C 0.10 0.75 6.70 -39.28 -0.26 0.48 16 26 O -0.50 -3.33 13.50 -19.47 -0.26 -3.59 16 27 C -0.09 -0.79 9.53 -39.02 -0.37 -1.16 16 28 N -0.53 -14.61 7.89 -10.33 -0.08 -14.69 16 29 H 0.27 6.43 8.29 -40.82 -0.34 6.09 16 30 H 0.09 2.24 8.06 -52.49 -0.42 1.82 16 31 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 32 H 0.09 1.85 6.68 -52.49 -0.35 1.50 16 33 H 0.40 7.44 8.59 -40.82 -0.35 7.09 16 34 H 0.05 0.79 7.92 -51.93 -0.41 0.38 16 35 H 0.05 0.80 7.92 -51.93 -0.41 0.38 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.40 2.51 6.50 -40.82 -0.27 2.25 16 41 H 0.13 0.54 6.40 -52.49 -0.34 0.21 16 42 H 0.14 0.43 8.06 -52.49 -0.42 0.00 16 43 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 44 H 0.39 0.72 9.06 45.56 0.41 1.13 16 45 H 0.14 1.40 7.65 -52.48 -0.40 0.99 16 LS Contribution 386.53 15.07 5.82 5.82 Total: -1.00 -34.59 386.53 -10.57 -45.16 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -5.04 Total: 11.36 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -6.03 Total: -10.14 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.13 Total: -54.34 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.18 Total: -11.47 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.59 -10.57 -45.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319180420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.705 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds