Wall clock time and date at job start Sat Apr 11 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86797 * 120.00212 * 2 1 4 4 H 1.48500 * 109.47067 * 240.00265 * 3 2 1 5 5 H 1.48496 * 109.47391 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46899 * 120.00479 * 3 2 1 7 7 C 1.40024 * 119.99370 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.41312 * 120.00321 * 359.97438 * 7 2 1 10 10 C 1.40594 * 119.78416 * 179.97438 * 9 7 2 11 11 C 1.38350 * 119.14535 * 180.02562 * 10 9 7 12 12 C 1.38641 * 118.68180 * 0.02562 * 11 10 9 13 13 C 1.39751 * 119.49178 * 359.97438 * 12 11 10 14 14 N 1.38827 * 119.58614 * 179.97438 * 13 12 11 15 15 C 1.46507 * 119.99596 * 359.97438 * 14 13 12 16 16 C 1.53003 * 109.46777 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.46628 * 180.02562 * 16 15 14 18 18 N 1.46497 * 109.46756 * 180.02562 * 17 16 15 19 19 C 1.34780 * 120.00238 * 179.97438 * 18 17 16 20 20 O 1.21552 * 119.99425 * 359.97438 * 19 18 17 21 21 C 1.47856 * 120.00158 * 179.97438 * 19 18 17 22 22 C 1.39605 * 120.11992 * 359.97438 * 21 19 18 23 23 C 1.37968 * 119.96340 * 180.02562 * 22 21 19 24 24 C 1.38288 * 120.20894 * 359.72208 * 23 22 21 25 25 C 1.38807 * 120.23481 * 0.55105 * 24 23 22 26 26 O 1.35915 * 119.98280 * 179.72830 * 25 24 23 27 27 C 1.38493 * 120.03360 * 359.44996 * 25 24 23 28 28 N 1.31983 * 120.83169 * 0.25921 * 13 12 11 29 29 H 0.97006 * 119.99400 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.42710 * 0.02562 * 10 9 7 31 31 H 1.08004 * 120.65438 * 179.97438 * 11 10 9 32 32 H 1.07997 * 120.25255 * 180.02562 * 12 11 10 33 33 H 0.96994 * 120.00463 * 180.02562 * 14 13 12 34 34 H 1.08997 * 109.46864 * 60.00226 * 15 14 13 35 35 H 1.08997 * 109.47148 * 299.99992 * 15 14 13 36 36 H 1.09000 * 109.47123 * 59.99913 * 16 15 14 37 37 H 1.08997 * 109.47061 * 299.99783 * 16 15 14 38 38 H 1.09000 * 109.47583 * 60.00019 * 17 16 15 39 39 H 1.08997 * 109.47079 * 299.99596 * 17 16 15 40 40 H 0.97006 * 120.00242 * 0.02562 * 18 17 16 41 41 H 1.08000 * 120.01627 * 359.97438 * 22 21 19 42 42 H 1.07999 * 119.89106 * 180.02562 * 23 22 21 43 43 H 1.07996 * 119.88253 * 180.27482 * 24 23 22 44 44 H 0.96705 * 113.99582 * 269.72538 * 26 25 24 45 45 H 1.08006 * 120.10478 * 180.25071 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2767 2.7464 0.0006 6 1 3.0954 1.6962 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0010 9 6 1.3008 -2.4365 -0.0005 10 6 2.0083 -3.6514 -0.0016 11 6 1.3032 -4.8418 -0.0022 12 6 -0.0824 -4.7943 -0.0021 13 6 -0.7284 -3.5551 -0.0010 14 7 -2.1158 -3.5053 -0.0015 15 6 -2.8932 -4.7471 -0.0038 16 6 -4.3865 -4.4138 -0.0046 17 6 -5.1984 -5.7106 -0.0063 18 7 -6.6282 -5.3915 -0.0076 19 6 -7.5402 -6.3839 -0.0098 20 8 -7.1763 -7.5436 -0.0110 21 6 -8.9832 -6.0618 -0.0105 22 6 -9.4039 -4.7306 -0.0085 23 6 -10.7513 -4.4337 -0.0087 24 6 -11.6879 -5.4511 -0.0167 25 6 -11.2791 -6.7776 -0.0131 26 8 -12.2041 -7.7734 -0.0154 27 6 -9.9292 -7.0869 -0.0129 28 7 -0.0361 -2.4314 -0.0052 29 1 -0.4849 0.8401 0.0004 30 1 3.0882 -3.6555 -0.0021 31 1 1.8219 -5.7891 -0.0034 32 1 -0.6581 -5.7081 -0.0021 33 1 -2.5704 -2.6485 -0.0012 34 1 -2.6509 -5.3290 0.8854 35 1 -2.6501 -5.3263 -0.8945 36 1 -4.6285 -3.8320 -0.8940 37 1 -4.6299 -3.8343 0.8860 38 1 -4.9564 -6.2921 0.8834 39 1 -4.9551 -6.2904 -0.8966 40 1 -6.9186 -4.4659 -0.0077 41 1 -8.6750 -3.9337 -0.0060 42 1 -11.0754 -3.4035 -0.0076 43 1 -12.7412 -5.2127 -0.0214 44 1 -12.4723 -8.0631 0.8674 45 1 -9.6098 -8.1187 -0.0141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319180420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:47 Heat of formation + Delta-G solvation = -41.901623 kcal Electronic energy + Delta-G solvation = -26854.049362 eV Core-core repulsion = 22835.320027 eV Total energy + Delta-G solvation = -4018.729335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.40503 -40.15660 -39.98112 -37.68721 -37.47141 -36.10199 -35.11018 -33.07774 -32.28366 -31.95313 -30.88637 -30.02033 -27.31008 -26.56043 -24.59772 -23.64446 -23.43592 -22.61306 -22.16135 -21.56139 -19.73405 -19.25593 -18.09982 -17.83225 -17.52417 -17.01432 -16.98212 -16.62307 -16.42141 -16.18677 -16.10220 -15.86527 -15.74620 -15.07438 -14.73784 -14.68565 -14.59208 -14.52691 -13.76038 -13.73370 -13.26204 -13.20656 -13.00289 -12.85172 -12.76639 -12.70652 -12.60447 -12.48867 -12.14740 -12.14080 -11.78582 -11.73890 -11.24699 -11.10889 -10.64392 -10.33060 -10.01405 -9.82101 -9.74479 -9.44146 -8.28694 -8.21878 -6.46666 -0.27540 0.21363 1.07767 1.35076 1.42936 1.54383 1.60807 1.71919 1.94702 2.26556 2.69248 2.70976 2.93798 3.22148 3.58383 3.85533 3.96600 3.96714 4.02870 4.08344 4.09847 4.14522 4.39489 4.42408 4.57225 4.57409 4.65666 4.72669 4.81443 4.88746 4.98594 5.01372 5.05827 5.12656 5.17431 5.18523 5.28520 5.31577 5.32312 5.39519 5.71521 5.72625 5.97710 6.07716 6.24065 6.41386 6.56547 6.78357 6.85150 6.97174 7.07706 7.23887 8.35138 8.52283 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.001604 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.085641 B =17453.940892 C =18853.703316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.026 3.974 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.472 4.472 8 H 0.085 0.915 9 C 0.258 3.742 10 C -0.345 4.345 11 C -0.031 4.031 12 C -0.370 4.370 13 C 0.393 3.607 14 N -0.732 5.732 15 C 0.142 3.858 16 C -0.123 4.123 17 C 0.128 3.872 18 N -0.709 5.709 19 C 0.553 3.447 20 O -0.582 6.582 21 C -0.134 4.134 22 C -0.091 4.091 23 C -0.103 4.103 24 C -0.118 4.118 25 C 0.092 3.908 26 O -0.509 6.509 27 C -0.110 4.110 28 N -0.563 5.563 29 H 0.277 0.723 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.396 0.604 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.416 0.584 41 H 0.156 0.844 42 H 0.168 0.832 43 H 0.156 0.844 44 H 0.412 0.588 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.364 -4.849 1.763 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.504 4.504 8 H 0.103 0.897 9 C 0.131 3.869 10 C -0.368 4.368 11 C -0.055 4.055 12 C -0.395 4.395 13 C 0.152 3.848 14 N -0.368 5.368 15 C 0.017 3.983 16 C -0.161 4.161 17 C 0.004 3.996 18 N -0.361 5.361 19 C 0.342 3.658 20 O -0.463 6.463 21 C -0.137 4.137 22 C -0.110 4.110 23 C -0.121 4.121 24 C -0.136 4.136 25 C 0.048 3.952 26 O -0.323 6.323 27 C -0.129 4.129 28 N -0.286 5.286 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.145 0.855 32 H 0.135 0.865 33 H 0.230 0.770 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.255 0.745 41 H 0.174 0.826 42 H 0.185 0.815 43 H 0.174 0.826 44 H 0.271 0.729 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -25.695 -4.916 1.160 26.187 hybrid contribution 0.813 -0.004 0.468 0.938 sum -24.882 -4.920 1.628 25.416 Atomic orbital electron populations 1.70232 1.08665 1.28763 1.29524 1.26937 0.95802 1.04247 0.92565 0.85225 0.78656 0.75638 0.79892 1.18546 1.19127 1.18530 1.19909 0.94599 0.90546 1.45355 0.89662 1.18677 0.87775 0.93132 0.87316 1.21699 0.98983 0.93833 1.22282 1.21010 0.93817 0.97149 0.93547 1.20971 0.94988 0.96208 1.27360 1.18974 0.86132 0.90227 0.89469 1.44213 1.01303 1.08318 1.82977 1.21073 0.90049 0.86151 1.01014 1.21759 0.92391 0.97268 1.04699 1.21157 0.78864 0.96999 1.02580 1.45757 1.06067 1.10084 1.74201 1.18612 0.86713 0.84844 0.75651 1.90769 1.82257 1.21427 1.51835 1.19745 0.91583 0.95181 1.07224 1.21666 0.97899 0.94432 0.97002 1.21427 0.91644 1.01048 0.97989 1.21976 1.02277 0.91248 0.98137 1.18444 0.87128 0.88461 1.01213 1.84802 1.58432 1.53289 1.35740 1.21561 0.92649 0.99863 0.98844 1.68190 1.07879 1.26004 1.26501 0.91253 0.88052 0.85484 0.86461 0.76959 0.92663 0.92748 0.89456 0.89373 0.91422 0.91567 0.74513 0.82644 0.81460 0.82619 0.72877 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.99 11.46 21.84 0.25 -39.74 16 2 C 0.03 1.36 5.50 85.29 0.47 1.83 16 3 Si 0.99 38.27 29.56 68.60 2.03 40.29 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.27 -9.73 7.11 99.48 0.71 -9.03 16 6 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 7 C -0.47 -26.29 9.14 23.46 0.21 -26.08 16 8 H 0.09 4.46 7.85 -2.91 -0.02 4.44 16 9 C 0.26 14.82 6.55 40.19 0.26 15.08 16 10 C -0.34 -17.87 9.83 22.87 0.22 -17.64 16 11 C -0.03 -1.43 10.15 22.39 0.23 -1.20 16 12 C -0.37 -16.76 9.34 22.73 0.21 -16.54 16 13 C 0.39 19.06 7.65 133.40 1.02 20.08 16 14 N -0.73 -27.61 5.72 -344.99 -1.97 -29.58 16 15 C 0.14 3.89 4.88 86.38 0.42 4.31 16 16 C -0.12 -2.28 5.44 30.60 0.17 -2.11 16 17 C 0.13 2.44 5.67 86.38 0.49 2.93 16 18 N -0.71 -11.83 5.51 -465.97 -2.57 -14.39 16 19 C 0.55 12.40 7.77 86.79 0.67 13.08 16 20 O -0.58 -18.16 16.35 -3.88 -0.06 -18.23 16 21 C -0.13 -2.37 5.87 -20.10 -0.12 -2.49 16 22 C -0.09 -0.96 9.54 22.54 0.21 -0.75 16 23 C -0.10 -0.80 10.03 22.22 0.22 -0.58 16 24 C -0.12 -1.15 9.98 22.42 0.22 -0.92 16 25 C 0.09 1.33 6.70 22.47 0.15 1.48 16 26 O -0.51 -6.53 13.50 -92.59 -1.25 -7.78 16 27 C -0.11 -2.07 9.53 22.63 0.22 -1.85 16 28 N -0.56 -31.59 7.89 -186.59 -1.47 -33.06 16 29 H 0.28 13.27 8.29 -92.70 -0.77 12.50 16 30 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 31 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 32 H 0.12 4.58 6.68 -2.91 -0.02 4.56 16 33 H 0.40 14.68 8.59 -92.71 -0.80 13.88 16 34 H 0.06 1.53 7.92 -2.39 -0.02 1.51 16 35 H 0.05 1.51 7.92 -2.39 -0.02 1.49 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.42 4.18 6.50 -92.70 -0.60 3.58 16 41 H 0.16 0.74 6.40 -2.91 -0.02 0.72 16 42 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 43 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 44 H 0.41 1.24 9.06 -74.05 -0.67 0.57 16 45 H 0.12 2.69 7.65 -2.91 -0.02 2.67 16 Total: -1.00 -78.14 386.53 -0.76 -78.90 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: -1.01 Total: 34.96 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 5.29 Total: -11.37 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -5.76 Total: -116.78 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -1.31 Total: -26.00 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.29 kcal Total: -78.14 -0.76 -78.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319180420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.998 kcal (2) G-P(sol) polarization free energy of solvation -78.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds