Wall clock time and date at job start Sat Apr 11 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39770 * 120.08167 * 289.54601 * 3 2 1 5 5 C 1.37691 * 119.92327 * 179.97438 * 4 3 2 6 6 C 1.39105 * 120.08013 * 359.97438 * 5 4 3 7 7 N 1.39548 * 119.92305 * 179.97438 * 6 5 4 8 8 C 1.46763 * 124.35133 * 174.21644 * 7 6 5 9 9 C 1.54481 * 105.47283 * 196.99525 * 8 7 6 10 10 H 1.08996 * 110.96916 * 216.42855 * 9 8 7 11 11 C 1.50699 * 110.96568 * 92.70706 * 9 8 7 12 12 O 1.21284 * 120.00212 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00091 * 180.02562 * 11 9 8 14 14 C 1.46500 * 120.00275 * 180.02562 * 13 11 9 15 15 C 1.52994 * 109.47124 * 179.97438 * 14 13 11 16 16 C 1.53007 * 109.47017 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.46948 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00487 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99718 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00068 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99796 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47166 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47230 * 120.00036 * 21 19 17 24 24 H 1.48496 * 109.46961 * 240.00103 * 21 19 17 25 25 C 1.54622 * 101.76526 * 334.58792 * 9 8 7 26 26 C 1.34425 * 124.34921 * 354.19933 * 7 6 5 27 27 O 1.21280 * 124.94064 * 359.34044 * 26 7 6 28 28 C 1.39104 * 120.15900 * 0.25963 * 6 5 4 29 29 C 1.37697 * 120.07858 * 359.47977 * 28 6 5 30 30 H 1.08008 * 120.03917 * 0.02562 * 4 3 2 31 31 H 1.08008 * 119.96549 * 179.97438 * 5 4 3 32 32 H 1.08994 * 110.24451 * 316.00200 * 8 7 6 33 33 H 1.09006 * 110.24317 * 78.00074 * 8 7 6 34 34 H 0.96998 * 119.99781 * 359.97438 * 13 11 9 35 35 H 1.09003 * 109.46850 * 299.99915 * 14 13 11 36 36 H 1.09005 * 109.46937 * 59.99324 * 14 13 11 37 37 H 1.09004 * 109.46929 * 299.99535 * 15 14 13 38 38 H 1.08997 * 109.47300 * 59.99923 * 15 14 13 39 39 H 1.09004 * 109.46822 * 299.99516 * 16 15 14 40 40 H 1.08997 * 109.47217 * 59.99788 * 16 15 14 41 41 H 0.97000 * 119.99790 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.48748 * 266.11127 * 25 9 8 43 43 H 1.09004 * 110.48196 * 143.47464 * 25 9 8 44 44 H 1.07993 * 119.96126 * 179.72074 * 28 6 5 45 45 H 1.08002 * 120.04311 * 180.25692 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2687 -0.4037 1.1397 5 6 4.6456 -0.4023 1.1360 6 6 5.3393 0.0004 -0.0005 7 7 6.7348 0.0010 -0.0006 8 6 7.5627 0.2886 -1.1777 9 6 8.9710 -0.2433 -0.8309 10 1 9.7449 0.4049 -1.2420 11 6 9.1461 -1.6603 -1.3132 12 8 8.2380 -2.2215 -1.8890 13 7 10.3117 -2.3040 -1.1047 14 6 10.4821 -3.6813 -1.5740 15 6 11.8853 -4.1730 -1.2134 16 6 12.0635 -5.6112 -1.7041 17 6 13.4458 -6.0953 -1.3495 18 1 14.1289 -5.4427 -0.8261 19 6 13.8383 -7.3719 -1.6924 20 7 13.0060 -8.1672 -2.3284 21 14 15.5515 -7.9722 -1.2522 22 1 16.2866 -6.8945 -0.5425 23 1 15.4476 -9.1629 -0.3710 24 1 16.2822 -8.3366 -2.4926 25 6 8.9596 -0.1820 0.7140 26 6 7.4934 -0.2614 1.0777 27 8 7.0647 -0.5190 2.1826 28 6 4.6453 0.4080 -1.1351 29 6 3.2683 0.4041 -1.1403 30 1 2.7308 -0.7176 2.0222 31 1 5.1878 -0.7142 2.0165 32 1 7.1684 -0.2295 -2.0518 33 1 7.5995 1.3627 -1.3597 34 1 11.0381 -1.8550 -0.6445 35 1 9.7390 -4.3216 -1.0986 36 1 10.3523 -3.7152 -2.6557 37 1 12.6281 -3.5326 -1.6891 38 1 12.0155 -4.1390 -0.1318 39 1 11.3207 -6.2519 -1.2288 40 1 11.9335 -5.6448 -2.7858 41 1 13.2823 -9.0651 -2.5699 42 1 9.3886 0.7578 1.0617 43 1 9.5030 -1.0288 1.1334 44 1 5.1871 0.7243 -2.0141 45 1 2.7301 0.7168 -2.0229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321549111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:52 Heat of formation + Delta-G solvation = -20.946402 kcal Electronic energy + Delta-G solvation = -27698.873113 eV Core-core repulsion = 23681.052465 eV Total energy + Delta-G solvation = -4017.820649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.86273 -39.85279 -39.07504 -37.08803 -36.55857 -35.55240 -33.92514 -33.31783 -31.58044 -31.32816 -30.01086 -28.35280 -27.02489 -24.86333 -24.13284 -23.19170 -22.17929 -20.85813 -20.56407 -19.93113 -19.31713 -18.20185 -17.92933 -16.57441 -16.35217 -16.12683 -15.70685 -15.50569 -15.36169 -14.76063 -14.63364 -14.50402 -14.42883 -14.25733 -14.07240 -13.99057 -13.81728 -13.68971 -13.06220 -13.00303 -12.68178 -12.55779 -12.36489 -12.30094 -12.10277 -11.89781 -11.79178 -11.64617 -10.97559 -10.83705 -10.67161 -10.62836 -10.14852 -10.08933 -9.96858 -9.50373 -9.48697 -9.17665 -8.99783 -8.43357 -8.40340 -6.07638 -4.11095 0.32209 0.92125 1.94622 2.23482 2.37535 2.40915 2.70989 3.01609 3.26004 3.33930 3.36814 3.52475 3.59684 3.60976 3.74576 4.16856 4.36075 4.39220 4.41680 4.45792 4.74221 4.78034 4.83960 4.97852 5.00127 5.10154 5.18001 5.19837 5.28454 5.51107 5.58021 5.59652 5.64562 5.70603 5.93174 5.95587 6.03368 6.27781 6.47823 6.48638 6.52683 6.68118 6.89666 7.19240 7.44184 7.50531 7.56441 7.67751 7.90441 8.09754 8.31233 8.95760 9.53650 11.03592 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.001779 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.905729 B =15734.550312 C =16244.096077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.261 3.739 3 C -0.066 4.066 4 C -0.037 4.037 5 C -0.162 4.162 6 C 0.206 3.794 7 N -0.554 5.554 8 C 0.107 3.893 9 C -0.126 4.126 10 H 0.133 0.867 11 C 0.511 3.489 12 O -0.533 6.533 13 N -0.720 5.720 14 C 0.115 3.885 15 C -0.121 4.121 16 C 0.023 3.977 17 C -0.524 4.524 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.144 4.144 26 C 0.520 3.480 27 O -0.500 6.500 28 C -0.159 4.159 29 C -0.038 4.038 30 H 0.137 0.863 31 H 0.164 0.836 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.400 0.600 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.125 0.875 43 H 0.116 0.884 44 H 0.138 0.862 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.670 24.199 3.474 27.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.054 4.054 3 C -0.070 4.070 4 C -0.058 4.058 5 C -0.182 4.182 6 C 0.110 3.890 7 N -0.275 5.275 8 C -0.015 4.015 9 C -0.148 4.148 10 H 0.151 0.849 11 C 0.295 3.705 12 O -0.410 6.410 13 N -0.370 5.370 14 C -0.007 4.007 15 C -0.159 4.159 16 C -0.015 4.015 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.184 4.184 26 C 0.310 3.690 27 O -0.375 6.375 28 C -0.180 4.180 29 C -0.059 4.059 30 H 0.154 0.846 31 H 0.181 0.819 32 H 0.128 0.872 33 H 0.112 0.888 34 H 0.234 0.766 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.143 0.857 43 H 0.135 0.865 44 H 0.156 0.844 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.275 23.444 3.579 27.680 hybrid contribution 1.843 -0.306 0.251 1.885 sum -12.431 23.138 3.830 26.544 Atomic orbital electron populations 1.81262 1.12113 1.09350 1.07558 1.25687 0.92600 0.93436 0.93710 1.15990 0.84342 1.09875 0.96808 1.21057 0.93437 0.94754 0.96583 1.21579 0.93985 1.03057 0.99602 1.17993 0.81231 0.94872 0.94910 1.45746 1.04018 1.65378 1.12389 1.22267 0.88524 1.01598 0.89096 1.22371 0.99350 0.96643 0.96445 0.84913 1.20124 0.82956 0.87476 0.79953 1.90746 1.40563 1.67784 1.41857 1.46172 1.15146 1.16399 1.59278 1.21712 0.99594 0.79709 0.99680 1.21896 0.92368 1.00894 1.00733 1.19038 0.97183 0.88495 0.96741 1.21225 0.98992 0.98545 1.37429 0.92562 1.25035 0.97391 0.96901 0.95131 1.69970 1.35317 1.07910 1.39975 0.86524 0.84432 0.78785 0.78174 1.19744 1.20982 1.20981 1.22404 0.94404 1.07182 0.94447 1.21029 0.89377 0.75134 0.83485 1.90651 1.77906 1.46366 1.22534 1.20699 0.93916 1.05481 0.97870 1.20917 0.93243 0.95238 0.96530 0.84557 0.81852 0.87246 0.88822 0.76591 0.91630 0.91516 0.92620 0.92645 0.96266 0.96258 0.92928 0.85741 0.86550 0.84426 0.84508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.12 18.54 41.84 0.78 -4.34 16 2 C 0.26 2.51 15.33 -22.48 -0.34 2.16 16 3 C -0.07 -0.52 5.74 -106.83 -0.61 -1.13 16 4 C -0.04 -0.30 9.75 -39.21 -0.38 -0.68 16 5 C -0.16 -1.52 9.26 -39.46 -0.37 -1.89 16 6 C 0.21 1.82 6.60 -83.70 -0.55 1.27 16 7 N -0.55 -4.64 3.13 -112.25 -0.35 -4.99 16 8 C 0.11 0.61 5.57 -3.12 -0.02 0.59 16 9 C -0.13 -0.71 3.54 -90.14 -0.32 -1.03 16 10 H 0.13 0.27 8.14 -51.93 -0.42 -0.16 16 11 C 0.51 5.52 7.08 -10.99 -0.08 5.44 16 12 O -0.53 -8.09 15.53 5.55 0.09 -8.00 16 13 N -0.72 -7.94 5.48 -60.29 -0.33 -8.27 16 14 C 0.12 1.78 5.67 -4.05 -0.02 1.76 16 15 C -0.12 -2.15 5.27 -26.73 -0.14 -2.29 16 16 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 17 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 18 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 21 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C -0.14 -0.82 6.40 -26.75 -0.17 -0.99 16 26 C 0.52 4.95 7.91 -10.86 -0.09 4.86 16 27 O -0.50 -6.31 14.79 5.56 0.08 -6.22 16 28 C -0.16 -1.08 9.38 -39.46 -0.37 -1.45 16 29 C -0.04 -0.25 9.75 -39.20 -0.38 -0.63 16 30 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 31 H 0.16 1.78 5.23 -52.48 -0.27 1.50 16 32 H 0.11 0.77 6.57 -51.93 -0.34 0.43 16 33 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.40 3.17 8.47 -40.82 -0.35 2.83 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.12 0.72 7.84 -51.93 -0.41 0.32 16 44 H 0.14 0.63 7.00 -52.49 -0.37 0.27 16 45 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 388.96 15.07 5.86 5.86 Total: -1.00 -35.76 388.96 -8.48 -44.25 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.93 Total: -2.23 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -4.39 Total: -6.51 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.83 Total: -43.05 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.17 Total: -14.22 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.76 -8.48 -44.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321549111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.301 kcal (2) G-P(sol) polarization free energy of solvation -35.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds