Wall clock time and date at job start Sat Apr 11 2020 06:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39770 * 120.08167 * 289.54601 * 3 2 1 5 5 C 1.37691 * 119.92327 * 179.97438 * 4 3 2 6 6 C 1.39105 * 120.08013 * 359.97438 * 5 4 3 7 7 N 1.39548 * 119.92305 * 179.97438 * 6 5 4 8 8 C 1.46763 * 124.35133 * 174.21644 * 7 6 5 9 9 C 1.54481 * 105.47283 * 196.99525 * 8 7 6 10 10 H 1.08996 * 110.96916 * 216.42855 * 9 8 7 11 11 C 1.50699 * 110.96568 * 92.70706 * 9 8 7 12 12 O 1.21284 * 120.00212 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00091 * 180.02562 * 11 9 8 14 14 C 1.46500 * 120.00275 * 180.02562 * 13 11 9 15 15 C 1.52994 * 109.47124 * 179.97438 * 14 13 11 16 16 C 1.53007 * 109.47017 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.46948 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00487 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99718 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00068 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99796 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47166 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47230 * 120.00036 * 21 19 17 24 24 H 1.48496 * 109.46961 * 240.00103 * 21 19 17 25 25 C 1.54622 * 101.76526 * 334.58792 * 9 8 7 26 26 C 1.34425 * 124.34921 * 354.19933 * 7 6 5 27 27 O 1.21280 * 124.94064 * 359.34044 * 26 7 6 28 28 C 1.39104 * 120.15900 * 0.25963 * 6 5 4 29 29 C 1.37697 * 120.07858 * 359.47977 * 28 6 5 30 30 H 1.08008 * 120.03917 * 0.02562 * 4 3 2 31 31 H 1.08008 * 119.96549 * 179.97438 * 5 4 3 32 32 H 1.08994 * 110.24451 * 316.00200 * 8 7 6 33 33 H 1.09006 * 110.24317 * 78.00074 * 8 7 6 34 34 H 0.96998 * 119.99781 * 359.97438 * 13 11 9 35 35 H 1.09003 * 109.46850 * 299.99915 * 14 13 11 36 36 H 1.09005 * 109.46937 * 59.99324 * 14 13 11 37 37 H 1.09004 * 109.46929 * 299.99535 * 15 14 13 38 38 H 1.08997 * 109.47300 * 59.99923 * 15 14 13 39 39 H 1.09004 * 109.46822 * 299.99516 * 16 15 14 40 40 H 1.08997 * 109.47217 * 59.99788 * 16 15 14 41 41 H 0.97000 * 119.99790 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.48748 * 266.11127 * 25 9 8 43 43 H 1.09004 * 110.48196 * 143.47464 * 25 9 8 44 44 H 1.07993 * 119.96126 * 179.72074 * 28 6 5 45 45 H 1.08002 * 120.04311 * 180.25692 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2687 -0.4037 1.1397 5 6 4.6456 -0.4023 1.1360 6 6 5.3393 0.0004 -0.0005 7 7 6.7348 0.0010 -0.0006 8 6 7.5627 0.2886 -1.1777 9 6 8.9710 -0.2433 -0.8309 10 1 9.7449 0.4049 -1.2420 11 6 9.1461 -1.6603 -1.3132 12 8 8.2380 -2.2215 -1.8890 13 7 10.3117 -2.3040 -1.1047 14 6 10.4821 -3.6813 -1.5740 15 6 11.8853 -4.1730 -1.2134 16 6 12.0635 -5.6112 -1.7041 17 6 13.4458 -6.0953 -1.3495 18 1 14.1289 -5.4427 -0.8261 19 6 13.8383 -7.3719 -1.6924 20 7 13.0060 -8.1672 -2.3284 21 14 15.5515 -7.9722 -1.2522 22 1 16.2866 -6.8945 -0.5425 23 1 15.4476 -9.1629 -0.3710 24 1 16.2822 -8.3366 -2.4926 25 6 8.9596 -0.1820 0.7140 26 6 7.4934 -0.2614 1.0777 27 8 7.0647 -0.5190 2.1826 28 6 4.6453 0.4080 -1.1351 29 6 3.2683 0.4041 -1.1403 30 1 2.7308 -0.7176 2.0222 31 1 5.1878 -0.7142 2.0165 32 1 7.1684 -0.2295 -2.0518 33 1 7.5995 1.3627 -1.3597 34 1 11.0381 -1.8550 -0.6445 35 1 9.7390 -4.3216 -1.0986 36 1 10.3523 -3.7152 -2.6557 37 1 12.6281 -3.5326 -1.6891 38 1 12.0155 -4.1390 -0.1318 39 1 11.3207 -6.2519 -1.2288 40 1 11.9335 -5.6448 -2.7858 41 1 13.2823 -9.0651 -2.5699 42 1 9.3886 0.7578 1.0617 43 1 9.5030 -1.0288 1.1334 44 1 5.1871 0.7243 -2.0141 45 1 2.7301 0.7168 -2.0229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321549111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:51 Heat of formation + Delta-G solvation = -44.398121 kcal Electronic energy + Delta-G solvation = -27699.890056 eV Core-core repulsion = 23681.052465 eV Total energy + Delta-G solvation = -4018.837591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.47662 -40.66002 -39.80168 -37.84651 -37.36970 -36.83317 -35.21712 -34.42088 -32.92239 -32.16604 -30.72205 -28.89234 -28.58906 -25.86856 -24.89176 -24.35153 -23.00807 -22.29188 -21.17629 -20.88680 -19.97703 -18.85524 -18.65545 -18.45526 -17.05466 -16.99460 -16.66081 -16.57530 -16.41102 -16.03200 -15.48450 -15.40836 -15.26160 -15.09211 -14.92559 -14.64508 -14.45517 -14.39709 -14.21684 -13.84572 -13.80846 -13.73303 -13.40891 -13.28204 -13.14630 -12.84803 -12.75007 -12.54711 -12.52533 -12.31963 -12.23513 -11.65154 -11.56432 -11.27214 -11.20773 -10.84173 -10.75725 -10.55439 -10.09161 -10.07112 -9.03280 -8.18962 -6.30195 -0.33178 0.33707 1.29270 1.42575 1.43269 1.55908 1.58781 1.60257 1.69837 2.01175 2.17152 2.43310 2.87022 2.89258 3.11588 3.15356 3.25197 3.65119 3.78958 3.85629 3.91908 4.17443 4.20038 4.24319 4.34495 4.42748 4.47544 4.57300 4.58058 4.67768 4.76418 4.85706 4.96802 4.97317 5.01888 5.04146 5.11750 5.19980 5.31338 5.37654 5.46230 5.55247 5.72739 5.85876 5.86874 5.95273 6.23146 6.43767 6.59810 6.86422 6.88445 7.27898 7.39835 8.93209 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.001779 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.905729 B =15734.550312 C =16244.096077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.284 3.716 3 C -0.075 4.075 4 C -0.036 4.036 5 C -0.183 4.183 6 C 0.191 3.809 7 N -0.557 5.557 8 C 0.101 3.899 9 C -0.108 4.108 10 H 0.187 0.813 11 C 0.505 3.495 12 O -0.582 6.582 13 N -0.710 5.710 14 C 0.130 3.870 15 C -0.102 4.102 16 C 0.021 3.979 17 C -0.539 4.539 18 H 0.069 0.931 19 C -0.005 4.005 20 N -0.936 5.936 21 Si 0.966 3.034 22 H -0.256 1.256 23 H -0.283 1.283 24 H -0.280 1.280 25 C -0.134 4.134 26 C 0.503 3.497 27 O -0.545 6.545 28 C -0.153 4.153 29 C -0.028 4.028 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.096 0.904 33 H 0.140 0.860 34 H 0.419 0.581 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.067 0.933 39 H -0.012 1.012 40 H -0.007 1.007 41 H 0.262 0.738 42 H 0.168 0.832 43 H 0.111 0.889 44 H 0.166 0.834 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.438 27.202 3.140 28.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.029 4.029 3 C -0.079 4.079 4 C -0.057 4.057 5 C -0.203 4.203 6 C 0.095 3.905 7 N -0.278 5.278 8 C -0.020 4.020 9 C -0.129 4.129 10 H 0.204 0.796 11 C 0.292 3.708 12 O -0.462 6.462 13 N -0.362 5.362 14 C 0.006 3.994 15 C -0.139 4.139 16 C -0.017 4.017 17 C -0.577 4.577 18 H 0.087 0.913 19 C -0.202 4.202 20 N -0.576 5.576 21 Si 0.791 3.209 22 H -0.180 1.180 23 H -0.209 1.209 24 H -0.206 1.206 25 C -0.174 4.174 26 C 0.294 3.706 27 O -0.423 6.423 28 C -0.174 4.174 29 C -0.049 4.049 30 H 0.162 0.838 31 H 0.162 0.838 32 H 0.115 0.885 33 H 0.158 0.842 34 H 0.257 0.743 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.006 0.994 40 H 0.011 0.989 41 H 0.071 0.929 42 H 0.185 0.815 43 H 0.129 0.871 44 H 0.183 0.817 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.013 26.498 3.244 29.274 hybrid contribution 1.122 -1.264 0.328 1.722 sum -10.891 25.234 3.573 27.715 Atomic orbital electron populations 1.81281 1.13364 1.11141 1.09054 1.25840 0.92658 0.92082 0.92368 1.16039 0.83413 1.10963 0.97512 1.21120 0.93082 0.94379 0.97114 1.21489 0.94485 1.04637 0.99730 1.18277 0.81982 0.94986 0.95300 1.45978 1.04002 1.64732 1.13073 1.22598 0.87767 1.04163 0.87425 1.22449 1.01017 0.93189 0.96264 0.79617 1.21126 0.81620 0.89374 0.78666 1.90735 1.42035 1.69415 1.44010 1.45921 1.16407 1.14544 1.59315 1.21182 0.97462 0.82153 0.98628 1.21588 0.94154 0.96949 1.01259 1.18970 0.95514 0.92274 0.94937 1.21736 1.00119 0.98919 1.36906 0.91324 1.26026 1.01781 0.97328 0.95065 1.70118 1.37662 1.08360 1.41489 0.85382 0.79209 0.78393 0.77947 1.17972 1.20901 1.20634 1.22499 0.91528 1.09168 0.94194 1.21853 0.91254 0.74349 0.83149 1.90632 1.78961 1.48347 1.24343 1.20982 0.93956 1.04504 0.97917 1.21232 0.93358 0.93697 0.96646 0.83755 0.83846 0.88544 0.84192 0.74315 0.94051 0.92980 0.90827 0.91448 0.99371 0.98903 0.92904 0.81489 0.87058 0.81701 0.81967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.41 18.54 19.00 0.35 -11.06 16 2 C 0.28 5.41 15.33 88.33 1.35 6.76 16 3 C -0.07 -1.13 5.74 -21.29 -0.12 -1.26 16 4 C -0.04 -0.59 9.75 22.51 0.22 -0.37 16 5 C -0.18 -3.58 9.26 22.35 0.21 -3.37 16 6 C 0.19 3.22 6.60 38.33 0.25 3.47 16 7 N -0.56 -8.38 3.13 -627.63 -1.96 -10.34 16 8 C 0.10 0.78 5.57 86.83 0.48 1.26 16 9 C -0.11 -0.75 3.54 -10.48 -0.04 -0.79 16 10 H 0.19 -0.56 8.14 -2.39 -0.02 -0.58 16 11 C 0.51 9.89 7.08 87.66 0.62 10.51 16 12 O -0.58 -17.47 15.53 -3.04 -0.05 -17.52 16 13 N -0.71 -14.22 5.48 -463.06 -2.54 -16.76 16 14 C 0.13 4.02 5.67 86.38 0.49 4.51 16 15 C -0.10 -3.53 5.27 30.59 0.16 -3.37 16 16 C 0.02 1.03 4.97 29.85 0.15 1.18 16 17 C -0.54 -29.04 9.11 25.60 0.23 -28.81 16 18 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 19 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 20 N -0.94 -56.26 13.29 21.45 0.28 -55.98 16 21 Si 0.97 42.73 29.54 68.60 2.03 44.76 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 25 C -0.13 -1.05 6.40 30.58 0.20 -0.86 16 26 C 0.50 8.99 7.91 87.89 0.70 9.68 16 27 O -0.54 -14.15 14.79 -3.03 -0.04 -14.19 16 28 C -0.15 -1.74 9.38 22.35 0.21 -1.53 16 29 C -0.03 -0.32 9.75 22.51 0.22 -0.10 16 30 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.14 3.43 5.23 -2.91 -0.02 3.41 16 32 H 0.10 1.09 6.57 -2.39 -0.02 1.07 16 33 H 0.14 -0.14 8.14 -2.38 -0.02 -0.16 16 34 H 0.42 5.16 8.47 -92.71 -0.79 4.38 16 35 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 40 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 41 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 42 H 0.17 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.11 1.07 7.84 -2.38 -0.02 1.05 16 44 H 0.17 0.93 7.00 -2.91 -0.02 0.91 16 45 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -84.13 388.96 4.12 -80.02 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 0.25 Total: 3.93 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 5.79 Total: -2.87 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -3.86 Total: -94.13 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.09 Total: -31.71 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -84.13 4.12 -80.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321549111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.621 kcal (2) G-P(sol) polarization free energy of solvation -84.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds