Wall clock time and date at job start Sat Apr 11 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39652 * 120.14704 * 86.72463 * 3 2 1 5 5 C 1.37932 * 119.84120 * 179.76058 * 4 3 2 6 6 C 1.38385 * 120.15322 * 0.49144 * 5 4 3 7 7 C 1.38339 * 120.30163 * 359.75872 * 6 5 4 8 8 C 1.50700 * 119.92191 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.47354 * 270.02801 * 8 7 6 10 10 C 1.34774 * 119.99667 * 179.97438 * 9 8 7 11 11 O 1.21347 * 120.00758 * 0.02562 * 10 9 8 12 12 C 1.49454 * 119.99657 * 179.97438 * 10 9 8 13 13 O 1.21346 * 120.00215 * 353.07209 * 12 10 9 14 14 N 1.34782 * 119.99819 * 173.07488 * 12 10 9 15 15 C 1.46921 * 120.63098 * 1.67067 * 14 12 10 16 16 C 1.52760 * 109.01079 * 233.58312 * 15 14 12 17 17 C 1.53039 * 109.38504 * 305.59196 * 16 15 14 18 18 C 1.50699 * 109.45155 * 181.24895 * 17 16 15 19 19 H 1.08001 * 120.00137 * 239.94030 * 18 17 16 20 20 C 1.37872 * 119.99804 * 59.93640 * 18 17 16 21 21 N 1.31520 * 119.99931 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00290 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46985 * 90.00021 * 22 20 18 24 24 H 1.48496 * 109.47456 * 210.00085 * 22 20 18 25 25 H 1.48506 * 109.47213 * 330.00503 * 22 20 18 26 26 C 1.53044 * 109.53808 * 61.23722 * 17 16 15 27 27 C 1.46924 * 120.62656 * 181.95573 * 14 12 10 28 28 C 1.37963 * 120.15594 * 0.02562 * 7 6 5 29 29 H 1.07994 * 120.08106 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.91976 * 180.22814 * 5 4 3 31 31 H 1.07998 * 119.84656 * 179.74513 * 6 5 4 32 32 H 1.09010 * 109.46862 * 30.02613 * 8 7 6 33 33 H 1.08993 * 109.47157 * 150.02275 * 8 7 6 34 34 H 0.97000 * 120.00093 * 359.97438 * 9 8 7 35 35 H 1.08998 * 109.58844 * 353.42245 * 15 14 12 36 36 H 1.09010 * 109.58188 * 113.84771 * 15 14 12 37 37 H 1.08997 * 109.56473 * 185.55414 * 16 15 14 38 38 H 1.08998 * 109.38126 * 65.51465 * 16 15 14 39 39 H 1.08999 * 109.46032 * 301.21696 * 17 16 15 40 40 H 0.97007 * 119.99659 * 179.97438 * 21 20 18 41 41 H 1.08998 * 109.49713 * 178.68323 * 26 17 16 42 42 H 1.09004 * 109.52772 * 58.60189 * 26 17 16 43 43 H 1.09010 * 109.58591 * 246.15535 * 27 14 12 44 44 H 1.08999 * 109.58994 * 6.43467 * 27 14 12 45 45 H 1.07997 * 120.07933 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -0.0680 -1.2057 5 6 4.6487 -0.0620 -1.1986 6 6 5.3374 0.0016 0.0000 7 6 4.6488 0.0646 1.1982 8 6 5.4075 0.1331 2.4985 9 7 5.6541 -1.2240 2.9921 10 6 6.3217 -1.4097 4.1481 11 8 6.7182 -0.4528 4.7803 12 6 6.5727 -2.7941 4.6519 13 8 6.0696 -3.7448 4.0902 14 7 7.3579 -2.9867 5.7303 15 6 7.9445 -1.8437 6.4430 16 6 9.4554 -2.0437 6.5461 17 6 9.7453 -3.4017 7.1893 18 6 11.2351 -3.5874 7.3197 19 1 11.7210 -4.4171 6.8278 20 6 11.9778 -2.6981 8.0670 21 7 11.3860 -1.6880 8.6663 22 14 13.8244 -2.9286 8.2294 23 1 14.5124 -2.1991 7.1340 24 1 14.2765 -2.3954 9.5395 25 1 14.1523 -4.3744 8.1435 26 6 9.1674 -4.5163 6.3141 27 6 7.6486 -4.3441 6.2118 28 6 3.2692 0.0638 1.2056 29 1 2.7332 -0.1223 -2.1415 30 1 5.1924 -0.1114 -2.1305 31 1 6.4174 0.0019 0.0000 32 1 6.3592 0.6397 2.3376 33 1 4.8213 0.6858 3.2325 34 1 5.3368 -1.9890 2.4870 35 1 7.7354 -0.9250 5.8949 36 1 7.5180 -1.7795 7.4442 37 1 9.8875 -1.2517 7.1578 38 1 9.8933 -2.0127 5.5484 39 1 9.2866 -3.4410 8.1772 40 1 11.9085 -1.0625 9.1924 41 1 9.3945 -5.4843 6.7607 42 1 9.6074 -4.4629 5.3183 43 1 7.1975 -4.4880 7.1937 44 1 7.2421 -5.0748 5.5125 45 1 2.7329 0.1126 2.1417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327489550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:00 Heat of formation + Delta-G solvation = -19.020836 kcal Electronic energy + Delta-G solvation = -28210.167889 eV Core-core repulsion = 24192.430739 eV Total energy + Delta-G solvation = -4017.737150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00508 -40.64678 -39.71501 -38.56723 -37.66859 -36.28207 -35.21661 -33.01862 -32.64016 -32.24650 -31.73008 -28.61358 -27.67249 -25.62670 -24.89520 -24.11721 -23.56260 -22.65149 -21.70098 -20.60517 -19.51092 -18.58120 -18.29824 -18.01197 -17.27720 -17.14504 -16.86343 -16.56626 -16.45136 -16.00729 -15.47607 -15.28846 -15.13693 -15.03370 -14.70750 -14.62856 -14.47111 -14.21261 -14.08675 -13.94426 -13.90663 -13.50901 -13.38340 -13.22171 -13.14438 -12.79522 -12.50226 -12.40844 -12.26319 -12.12156 -12.07878 -11.88820 -11.47352 -11.04068 -10.98790 -10.44234 -10.35436 -10.08240 -9.93588 -9.77525 -9.66369 -8.05383 -6.19296 -0.22286 0.22240 0.35324 1.36982 1.42931 1.44434 1.53707 1.57934 1.92013 2.14228 2.45640 2.54201 2.81704 2.91589 3.20941 3.33702 3.55477 3.91035 4.10409 4.14419 4.25870 4.29944 4.30576 4.35834 4.53616 4.56896 4.59298 4.68650 4.79978 4.82504 4.84510 4.97315 4.99561 5.16710 5.22267 5.28136 5.37072 5.38431 5.42584 5.49787 5.55079 5.65336 5.83557 5.98832 6.04198 6.14719 6.33075 6.40704 6.41080 6.72738 6.90952 6.95992 7.48399 8.98077 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022150 B = 0.002011 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.796938 B =13919.696338 C =14331.664574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.278 3.722 3 C -0.047 4.047 4 C -0.054 4.054 5 C -0.116 4.116 6 C -0.062 4.062 7 C -0.114 4.114 8 C 0.156 3.844 9 N -0.681 5.681 10 C 0.515 3.485 11 O -0.521 6.521 12 C 0.499 3.501 13 O -0.552 6.552 14 N -0.568 5.568 15 C 0.060 3.940 16 C -0.110 4.110 17 C 0.041 3.959 18 C -0.533 4.533 19 H 0.051 0.949 20 C 0.014 3.986 21 N -0.913 5.913 22 Si 0.951 3.049 23 H -0.277 1.277 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.113 4.113 27 C 0.111 3.889 28 C -0.049 4.049 29 H 0.151 0.849 30 H 0.164 0.836 31 H 0.150 0.850 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.420 0.580 35 H 0.152 0.848 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.025 0.975 39 H 0.001 0.999 40 H 0.261 0.739 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.256 5.181 -19.870 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.037 4.037 3 C -0.050 4.050 4 C -0.074 4.074 5 C -0.134 4.134 6 C -0.081 4.081 7 C -0.115 4.115 8 C 0.035 3.965 9 N -0.333 5.333 10 C 0.297 3.703 11 O -0.399 6.399 12 C 0.282 3.718 13 O -0.432 6.432 14 N -0.300 5.300 15 C -0.061 4.061 16 C -0.149 4.149 17 C 0.023 3.977 18 C -0.571 4.571 19 H 0.069 0.931 20 C -0.185 4.185 21 N -0.553 5.553 22 Si 0.777 3.223 23 H -0.203 1.203 24 H -0.210 1.210 25 H -0.195 1.195 26 C -0.151 4.151 27 C -0.011 4.011 28 C -0.070 4.070 29 H 0.169 0.831 30 H 0.181 0.819 31 H 0.167 0.833 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.257 0.743 35 H 0.168 0.832 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.044 0.956 39 H 0.019 0.981 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.972 5.518 -19.586 25.263 hybrid contribution 1.339 -0.456 0.531 1.512 sum -13.632 5.061 -19.054 23.969 Atomic orbital electron populations 1.81306 1.13652 1.10851 1.08739 1.26022 0.92943 0.92250 0.92437 1.16017 0.83088 1.10070 0.95836 1.21535 0.94986 0.94194 0.96712 1.21435 0.93213 0.99232 0.99484 1.21697 1.01797 0.93234 0.91367 1.19564 0.92808 1.04415 0.94696 1.20482 1.01068 0.82220 0.92741 1.45823 1.54698 1.11038 1.21780 1.19982 0.79170 0.88788 0.82396 1.90357 1.50123 1.43048 1.56394 1.20237 0.80407 0.89919 0.81253 1.90693 1.51179 1.43207 1.58143 1.48238 1.45182 1.09287 1.27258 1.23224 0.94087 0.91065 0.97714 1.21664 0.92996 1.01533 0.98665 1.18667 0.94215 0.91689 0.93160 1.21552 0.94050 1.10920 1.30617 0.93111 1.25699 1.02430 0.95105 0.95275 1.69984 1.36751 1.15261 1.33291 0.85663 0.80936 0.78352 0.77310 1.20287 1.21015 1.19508 1.21851 0.93361 0.99997 0.99868 1.21831 0.96503 0.82631 1.00131 1.21193 0.93711 0.94919 0.97217 0.83097 0.81874 0.83264 0.88732 0.89308 0.74258 0.83158 0.92709 0.90652 0.95633 0.98120 0.93009 0.91164 0.93463 0.90703 0.88746 0.84408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.31 18.54 19.00 0.35 -9.96 16 2 C 0.28 4.40 15.33 88.33 1.35 5.76 16 3 C -0.05 -0.47 5.73 -21.36 -0.12 -0.59 16 4 C -0.05 -0.31 9.76 22.54 0.22 -0.09 16 5 C -0.12 -0.43 10.03 22.23 0.22 -0.21 16 6 C -0.06 -0.36 9.69 22.33 0.22 -0.14 16 7 C -0.11 -0.99 5.24 -19.91 -0.10 -1.09 16 8 C 0.16 1.93 5.79 85.63 0.50 2.43 16 9 N -0.68 -12.10 5.54 -468.14 -2.59 -14.69 16 10 C 0.52 13.70 7.80 87.27 0.68 14.38 16 11 O -0.52 -15.99 13.02 -3.24 -0.04 -16.03 16 12 C 0.50 15.89 7.76 87.27 0.68 16.56 16 13 O -0.55 -18.34 15.91 -3.24 -0.05 -18.39 16 14 N -0.57 -20.12 2.98 -821.29 -2.45 -22.57 16 15 C 0.06 2.30 6.20 86.22 0.53 2.84 16 16 C -0.11 -5.11 5.14 30.53 0.16 -4.96 16 17 C 0.04 2.01 2.07 -11.51 -0.02 1.99 16 18 C -0.53 -28.83 8.56 25.60 0.22 -28.61 16 19 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 20 C 0.01 0.74 5.30 84.65 0.45 1.19 16 21 N -0.91 -51.56 11.31 21.45 0.24 -51.32 16 22 Si 0.95 42.99 29.54 68.60 2.03 45.02 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 26 C -0.11 -4.51 5.30 30.67 0.16 -4.35 16 27 C 0.11 3.84 6.43 86.36 0.56 4.39 16 28 C -0.05 -0.47 9.41 22.54 0.21 -0.26 16 29 H 0.15 0.36 8.06 -2.91 -0.02 0.33 16 30 H 0.16 -0.18 8.06 -2.91 -0.02 -0.21 16 31 H 0.15 0.50 8.06 -2.91 -0.02 0.48 16 32 H 0.09 1.13 8.08 -2.38 -0.02 1.11 16 33 H 0.09 1.11 8.08 -2.39 -0.02 1.09 16 34 H 0.42 6.65 7.95 -92.71 -0.74 5.91 16 35 H 0.15 5.64 3.79 -82.25 -0.31 5.33 16 36 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.08 3.97 6.03 -2.39 -0.01 3.95 16 38 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.26 14.05 8.31 -92.70 -0.77 13.28 16 41 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.07 2.46 8.14 -2.38 -0.02 2.45 16 44 H 0.09 3.03 7.01 -2.39 -0.02 3.02 16 45 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -68.32 381.78 3.39 -64.93 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.00 Total: 13.78 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 5.91 Total: 9.23 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -4.44 Total: -98.54 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.09 Total: -34.42 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -68.32 3.39 -64.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327489550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.906 kcal (2) G-P(sol) polarization free energy of solvation -68.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds