Wall clock time and date at job start Sat Apr 11 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39636 * 120.14923 * 213.67186 * 3 2 1 5 5 C 1.37940 * 119.84919 * 180.02562 * 4 3 2 6 6 C 1.38369 * 120.15031 * 0.02746 * 5 4 3 7 7 C 1.50704 * 119.84860 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46966 * 89.99889 * 7 6 5 9 9 N 1.46503 * 109.46913 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99979 * 180.02562 * 9 8 7 11 11 O 1.21347 * 120.00030 * 359.97438 * 10 9 8 12 12 C 1.49450 * 119.99896 * 179.97438 * 10 9 8 13 13 O 1.21344 * 120.00000 * 4.97407 * 12 10 9 14 14 N 1.34778 * 119.99840 * 184.97173 * 12 10 9 15 15 C 1.46502 * 120.00026 * 174.28731 * 14 12 10 16 16 C 1.52996 * 109.47289 * 183.79908 * 15 14 12 17 17 C 1.50704 * 115.54961 * 306.40952 * 16 15 14 18 18 H 1.07992 * 119.99994 * 145.15069 * 17 16 15 19 19 C 1.37879 * 119.99773 * 325.15661 * 17 16 15 20 20 N 1.31516 * 120.00215 * 349.98771 * 19 17 16 21 21 Si 1.86806 * 120.00028 * 169.99128 * 19 17 16 22 22 H 1.48508 * 109.46698 * 89.99791 * 21 19 17 23 23 H 1.48499 * 109.47191 * 209.99620 * 21 19 17 24 24 H 1.48497 * 109.47101 * 330.00145 * 21 19 17 25 25 C 1.53004 * 117.50178 * 160.74214 * 16 15 14 26 26 C 1.52995 * 117.50428 * 92.08097 * 16 15 14 27 27 C 1.38363 * 120.30401 * 0.22737 * 6 5 4 28 28 C 1.37943 * 120.15037 * 359.49146 * 27 6 5 29 29 H 1.08003 * 120.07406 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.93047 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.46726 * 330.00129 * 7 6 5 32 32 H 1.08996 * 109.47072 * 210.00176 * 7 6 5 33 33 H 1.08997 * 109.47337 * 60.00163 * 8 7 6 34 34 H 1.09005 * 109.47297 * 299.99871 * 8 7 6 35 35 H 0.96994 * 120.00006 * 0.02562 * 9 8 7 36 36 H 0.96998 * 119.99964 * 354.00983 * 14 12 10 37 37 H 1.09008 * 109.46636 * 303.79453 * 15 14 12 38 38 H 1.08993 * 109.47401 * 63.79379 * 15 14 12 39 39 H 0.97002 * 120.00422 * 185.03614 * 20 19 17 40 40 H 1.08998 * 117.49480 * 359.97438 * 25 16 15 41 41 H 1.08994 * 117.49647 * 145.01685 * 25 16 15 42 42 H 1.08997 * 117.50195 * 214.98253 * 26 16 15 43 43 H 1.09009 * 117.49602 * 359.97170 * 26 16 15 44 44 H 1.08001 * 119.92488 * 179.72192 * 27 6 5 45 45 H 1.07997 * 120.07837 * 180.25354 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2688 1.0058 0.6695 5 6 4.6482 1.0007 0.6650 6 6 5.3374 0.0029 -0.0013 7 6 6.8444 0.0043 -0.0022 8 6 7.3558 -0.7956 1.1975 9 7 8.8208 -0.7938 1.1969 10 6 9.4959 -1.4411 2.1674 11 8 8.8903 -2.0250 3.0418 12 6 10.9904 -1.4397 2.1664 13 8 11.5960 -0.7821 1.3459 14 7 11.6655 -2.1687 3.0771 15 6 13.1252 -2.2679 2.9997 16 6 13.6297 -3.2223 4.0838 17 6 13.1792 -2.9083 5.4872 18 1 12.9764 -3.7103 6.1814 19 6 13.0259 -1.5970 5.8848 20 7 13.4566 -0.6217 5.1148 21 14 12.2064 -1.2057 7.5173 22 1 13.2353 -1.1494 8.5867 23 1 11.5177 0.1066 7.4234 24 1 11.2149 -2.2632 7.8395 25 6 15.0288 -3.8159 3.9072 26 6 13.7926 -4.6963 3.7075 27 6 4.6492 -0.9932 -0.6711 28 6 3.2698 -1.0035 -0.6699 29 1 2.7321 1.7855 1.1896 30 1 5.1916 1.7773 1.1827 31 1 7.2068 1.0302 0.0639 32 1 7.2075 -0.4507 -0.9237 33 1 6.9934 -1.8214 1.1315 34 1 6.9927 -0.3406 2.1191 35 1 9.3050 -0.3267 0.4982 36 1 11.1854 -2.6244 3.7860 37 1 13.4120 -2.6478 2.0190 38 1 13.5648 -1.2820 3.1503 39 1 13.4154 0.2962 5.4259 40 1 15.5896 -3.5268 3.0184 41 1 15.6231 -3.9796 4.8061 42 1 13.5743 -5.4388 4.4749 43 1 13.5399 -4.9862 2.6875 44 1 5.1933 -1.7666 -1.1929 45 1 2.7339 -1.7839 -1.1897 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328108861.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:04 Heat of formation + Delta-G solvation = 3.227690 kcal Electronic energy + Delta-G solvation = -27497.988444 eV Core-core repulsion = 23481.216063 eV Total energy + Delta-G solvation = -4016.772381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.29333 -39.91993 -38.10951 -37.03863 -36.70534 -35.65776 -33.44224 -32.80889 -32.20971 -31.61141 -29.42415 -26.86316 -25.63453 -24.91872 -23.30575 -22.76699 -21.88561 -21.25862 -19.78375 -19.40841 -19.39353 -18.01863 -16.67427 -16.38158 -16.24624 -15.82463 -15.58165 -15.14380 -14.97544 -14.83151 -14.58963 -14.43608 -14.41776 -14.01129 -13.80859 -13.48468 -13.35062 -13.17871 -13.02159 -12.87932 -12.65312 -12.08361 -11.95040 -11.89768 -11.80051 -11.56177 -11.42151 -11.17233 -11.04495 -10.82431 -10.54143 -10.31018 -9.67545 -9.55137 -9.28447 -9.21974 -9.20175 -9.00345 -8.88636 -8.36380 -8.02521 -6.11965 -4.21760 0.24257 0.82797 1.93543 2.23860 2.44716 2.79503 3.22045 3.31304 3.34978 3.38244 3.42658 3.77335 4.08913 4.25915 4.28504 4.36658 4.42440 4.63935 4.69535 4.81183 4.87535 5.00110 5.10724 5.20251 5.31163 5.41373 5.45337 5.55335 5.68420 5.69158 5.78273 5.93857 6.03981 6.22611 6.25693 6.29884 6.47217 6.51769 6.62581 6.81176 6.98369 7.04708 7.16455 7.23312 7.37115 7.47954 7.85325 7.97531 8.25275 8.33599 8.75334 8.78732 9.39809 10.84988 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016862 B = 0.001950 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.118708 B =14356.975008 C =15112.102703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.255 3.745 3 C -0.035 4.035 4 C -0.067 4.067 5 C -0.113 4.113 6 C -0.047 4.047 7 C -0.100 4.100 8 C 0.123 3.877 9 N -0.711 5.711 10 C 0.509 3.491 11 O -0.519 6.519 12 C 0.493 3.507 13 O -0.546 6.546 14 N -0.649 5.649 15 C 0.158 3.842 16 C 0.034 3.966 17 C -0.498 4.498 18 H 0.064 0.936 19 C 0.074 3.926 20 N -0.870 5.870 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.270 1.270 25 C -0.193 4.193 26 C -0.211 4.211 27 C -0.114 4.114 28 C -0.067 4.067 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.412 0.588 36 H 0.413 0.587 37 H 0.033 0.967 38 H 0.117 0.883 39 H 0.264 0.736 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.136 0.864 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.715 2.770 -12.644 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.060 4.060 3 C -0.038 4.038 4 C -0.087 4.087 5 C -0.131 4.131 6 C -0.049 4.049 7 C -0.137 4.137 8 C 0.000 4.000 9 N -0.366 5.366 10 C 0.290 3.710 11 O -0.394 6.394 12 C 0.272 3.728 13 O -0.426 6.426 14 N -0.298 5.298 15 C 0.036 3.964 16 C 0.033 3.967 17 C -0.535 4.535 18 H 0.082 0.918 19 C -0.130 4.130 20 N -0.506 5.506 21 Si 0.719 3.281 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.195 1.195 25 C -0.232 4.232 26 C -0.248 4.248 27 C -0.132 4.132 28 C -0.088 4.088 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.248 0.752 36 H 0.250 0.750 37 H 0.051 0.949 38 H 0.134 0.866 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.154 0.846 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.525 2.986 -12.597 20.993 hybrid contribution 0.077 0.236 0.948 0.980 sum -16.449 3.222 -11.650 20.412 Atomic orbital electron populations 1.81275 1.12124 1.07715 1.08370 1.25754 0.92711 0.93806 0.93748 1.16022 0.84258 0.99215 1.04348 1.21191 0.94283 0.96722 0.96545 1.21075 0.93505 0.99109 0.99456 1.19958 0.95322 0.94214 0.95375 1.20906 0.90998 1.02456 0.99368 1.21353 0.79454 1.01007 0.98215 1.45707 1.06805 1.54567 1.29534 1.20634 0.89468 0.79108 0.81806 1.90752 1.70277 1.42419 1.35929 1.19759 0.87214 0.82147 0.83706 1.90684 1.69575 1.42237 1.40111 1.45717 1.09374 1.46824 1.27869 1.21211 0.77141 1.03495 0.94572 1.19183 0.94356 0.88112 0.95019 1.20492 1.45966 0.92033 0.95053 0.91828 1.24987 0.94619 0.96227 0.97192 1.69817 1.44576 1.00118 1.36101 0.86578 0.79912 0.78093 0.83538 1.20585 1.21016 1.19466 1.22927 0.92319 1.07106 1.00847 1.22978 1.05420 0.96664 0.99774 1.21060 0.93496 0.98743 0.99874 1.21183 0.94271 0.96628 0.96687 0.84856 0.84564 0.89354 0.89390 0.90789 0.90803 0.75171 0.75009 0.94910 0.86583 0.92548 0.91422 0.90065 0.90447 0.91289 0.84591 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.65 18.54 41.84 0.78 -3.87 16 2 C 0.26 2.18 15.33 -22.48 -0.34 1.83 16 3 C -0.04 -0.22 5.73 -106.93 -0.61 -0.84 16 4 C -0.07 -0.37 9.76 -39.17 -0.38 -0.75 16 5 C -0.11 -0.60 9.68 -39.64 -0.38 -0.98 16 6 C -0.05 -0.26 5.14 -104.53 -0.54 -0.80 16 7 C -0.10 -0.54 5.45 -27.88 -0.15 -0.69 16 8 C 0.12 1.10 5.66 -4.04 -0.02 1.08 16 9 N -0.71 -8.51 5.55 -60.73 -0.34 -8.85 16 10 C 0.51 8.54 7.89 -11.58 -0.09 8.45 16 11 O -0.52 -9.89 16.49 5.50 0.09 -9.80 16 12 C 0.49 9.72 7.88 -11.58 -0.09 9.62 16 13 O -0.55 -11.47 16.50 5.50 0.09 -11.38 16 14 N -0.65 -13.85 5.27 -60.73 -0.32 -14.17 16 15 C 0.16 3.58 4.73 -4.04 -0.02 3.56 16 16 C 0.03 0.78 2.00 -155.66 -0.31 0.47 16 17 C -0.50 -12.55 8.27 -34.44 -0.28 -12.83 16 18 H 0.06 1.61 7.83 -52.49 -0.41 1.20 16 19 C 0.07 1.89 5.13 -17.82 -0.09 1.80 16 20 N -0.87 -22.84 10.72 55.43 0.59 -22.25 16 21 Si 0.89 20.21 29.55 -169.99 -5.02 15.18 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 25 C -0.19 -4.10 9.96 -26.69 -0.27 -4.37 16 26 C -0.21 -4.28 9.92 -26.70 -0.26 -4.55 16 27 C -0.11 -0.57 9.68 -39.64 -0.38 -0.95 16 28 C -0.07 -0.36 9.76 -39.17 -0.38 -0.74 16 29 H 0.13 0.55 8.06 -52.48 -0.42 0.12 16 30 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 31 H 0.09 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.09 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.41 4.33 7.95 -40.82 -0.32 4.01 16 36 H 0.41 9.01 7.40 -40.82 -0.30 8.71 16 37 H 0.03 0.71 8.08 -51.92 -0.42 0.29 16 38 H 0.12 2.98 6.03 -51.93 -0.31 2.66 16 39 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 43 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 44 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 45 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 398.76 15.07 6.01 6.01 Total: -1.00 -30.43 398.76 -8.72 -39.14 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.97 Total: 10.66 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -4.62 Total: -0.68 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.71 Total: -49.14 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.18 Total: -21.17 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.43 -8.72 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328108861.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.368 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds