Wall clock time and date at job start Sat Apr 11 2020 06:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39636 * 120.14923 * 213.67186 * 3 2 1 5 5 C 1.37940 * 119.84919 * 180.02562 * 4 3 2 6 6 C 1.38369 * 120.15031 * 0.02746 * 5 4 3 7 7 C 1.50704 * 119.84860 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46966 * 89.99889 * 7 6 5 9 9 N 1.46503 * 109.46913 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99979 * 180.02562 * 9 8 7 11 11 O 1.21347 * 120.00030 * 359.97438 * 10 9 8 12 12 C 1.49450 * 119.99896 * 179.97438 * 10 9 8 13 13 O 1.21344 * 120.00000 * 4.97407 * 12 10 9 14 14 N 1.34778 * 119.99840 * 184.97173 * 12 10 9 15 15 C 1.46502 * 120.00026 * 174.28731 * 14 12 10 16 16 C 1.52996 * 109.47289 * 183.79908 * 15 14 12 17 17 C 1.50704 * 115.54961 * 306.40952 * 16 15 14 18 18 H 1.07992 * 119.99994 * 145.15069 * 17 16 15 19 19 C 1.37879 * 119.99773 * 325.15661 * 17 16 15 20 20 N 1.31516 * 120.00215 * 349.98771 * 19 17 16 21 21 Si 1.86806 * 120.00028 * 169.99128 * 19 17 16 22 22 H 1.48508 * 109.46698 * 89.99791 * 21 19 17 23 23 H 1.48499 * 109.47191 * 209.99620 * 21 19 17 24 24 H 1.48497 * 109.47101 * 330.00145 * 21 19 17 25 25 C 1.53004 * 117.50178 * 160.74214 * 16 15 14 26 26 C 1.52995 * 117.50428 * 92.08097 * 16 15 14 27 27 C 1.38363 * 120.30401 * 0.22737 * 6 5 4 28 28 C 1.37943 * 120.15037 * 359.49146 * 27 6 5 29 29 H 1.08003 * 120.07406 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.93047 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.46726 * 330.00129 * 7 6 5 32 32 H 1.08996 * 109.47072 * 210.00176 * 7 6 5 33 33 H 1.08997 * 109.47337 * 60.00163 * 8 7 6 34 34 H 1.09005 * 109.47297 * 299.99871 * 8 7 6 35 35 H 0.96994 * 120.00006 * 0.02562 * 9 8 7 36 36 H 0.96998 * 119.99964 * 354.00983 * 14 12 10 37 37 H 1.09008 * 109.46636 * 303.79453 * 15 14 12 38 38 H 1.08993 * 109.47401 * 63.79379 * 15 14 12 39 39 H 0.97002 * 120.00422 * 185.03614 * 20 19 17 40 40 H 1.08998 * 117.49480 * 359.97438 * 25 16 15 41 41 H 1.08994 * 117.49647 * 145.01685 * 25 16 15 42 42 H 1.08997 * 117.50195 * 214.98253 * 26 16 15 43 43 H 1.09009 * 117.49602 * 359.97170 * 26 16 15 44 44 H 1.08001 * 119.92488 * 179.72192 * 27 6 5 45 45 H 1.07997 * 120.07837 * 180.25354 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2688 1.0058 0.6695 5 6 4.6482 1.0007 0.6650 6 6 5.3374 0.0029 -0.0013 7 6 6.8444 0.0043 -0.0022 8 6 7.3558 -0.7956 1.1975 9 7 8.8208 -0.7938 1.1969 10 6 9.4959 -1.4411 2.1674 11 8 8.8903 -2.0250 3.0418 12 6 10.9904 -1.4397 2.1664 13 8 11.5960 -0.7821 1.3459 14 7 11.6655 -2.1687 3.0771 15 6 13.1252 -2.2679 2.9997 16 6 13.6297 -3.2223 4.0838 17 6 13.1792 -2.9083 5.4872 18 1 12.9764 -3.7103 6.1814 19 6 13.0259 -1.5970 5.8848 20 7 13.4566 -0.6217 5.1148 21 14 12.2064 -1.2057 7.5173 22 1 13.2353 -1.1494 8.5867 23 1 11.5177 0.1066 7.4234 24 1 11.2149 -2.2632 7.8395 25 6 15.0288 -3.8159 3.9072 26 6 13.7926 -4.6963 3.7075 27 6 4.6492 -0.9932 -0.6711 28 6 3.2698 -1.0035 -0.6699 29 1 2.7321 1.7855 1.1896 30 1 5.1916 1.7773 1.1827 31 1 7.2068 1.0302 0.0639 32 1 7.2075 -0.4507 -0.9237 33 1 6.9934 -1.8214 1.1315 34 1 6.9927 -0.3406 2.1191 35 1 9.3050 -0.3267 0.4982 36 1 11.1854 -2.6244 3.7860 37 1 13.4120 -2.6478 2.0190 38 1 13.5648 -1.2820 3.1503 39 1 13.4154 0.2962 5.4259 40 1 15.5896 -3.5268 3.0184 41 1 15.6231 -3.9796 4.8061 42 1 13.5743 -5.4388 4.4749 43 1 13.5399 -4.9862 2.6875 44 1 5.1933 -1.7666 -1.1929 45 1 2.7339 -1.7839 -1.1897 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328108861.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:03 Heat of formation + Delta-G solvation = -14.915847 kcal Electronic energy + Delta-G solvation = -27498.775207 eV Core-core repulsion = 23481.216063 eV Total energy + Delta-G solvation = -4017.559144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.52919 -40.53217 -39.57743 -38.40410 -37.75782 -36.60381 -34.86114 -34.13852 -33.71292 -31.99541 -30.14911 -28.42304 -27.47221 -25.90475 -23.87894 -23.69304 -22.91551 -22.55099 -21.22876 -21.07895 -19.88437 -19.51522 -18.04961 -17.81851 -17.13855 -16.76936 -16.66746 -16.51453 -16.10856 -16.05982 -15.62311 -15.45954 -15.33273 -15.07952 -14.85928 -14.47434 -14.32496 -14.30498 -13.95455 -13.86234 -13.60968 -13.58880 -13.39136 -12.89849 -12.69938 -12.65945 -12.65191 -12.41336 -12.34611 -12.29811 -12.03002 -11.85171 -11.41069 -11.08398 -10.68449 -10.53407 -10.26071 -10.14769 -9.92257 -9.77091 -9.72280 -8.03693 -6.18080 -0.23384 0.44960 0.50603 1.40565 1.46685 1.51090 1.53838 1.58310 1.91872 2.30155 2.41287 2.80319 2.87132 2.91202 3.08174 3.59873 3.72704 3.88130 3.90738 4.00470 4.06745 4.22325 4.24921 4.43491 4.52437 4.54557 4.62182 4.73661 4.78148 4.84007 4.93016 4.99612 5.07961 5.10250 5.13922 5.24733 5.29540 5.30805 5.37982 5.52020 5.59929 5.62345 5.63616 5.90164 5.92968 6.10580 6.37262 6.41309 6.59664 6.82598 6.91713 7.17158 7.44589 8.90643 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016862 B = 0.001950 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.118708 B =14356.975008 C =15112.102703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.279 3.721 3 C -0.050 4.050 4 C -0.068 4.068 5 C -0.117 4.117 6 C -0.050 4.050 7 C -0.089 4.089 8 C 0.120 3.880 9 N -0.687 5.687 10 C 0.512 3.488 11 O -0.546 6.546 12 C 0.489 3.511 13 O -0.561 6.561 14 N -0.657 5.657 15 C 0.170 3.830 16 C 0.002 3.998 17 C -0.506 4.506 18 H 0.056 0.944 19 C 0.038 3.962 20 N -0.891 5.891 21 Si 0.940 3.060 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.268 1.268 25 C -0.191 4.191 26 C -0.187 4.187 27 C -0.115 4.115 28 C -0.067 4.067 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.421 0.579 36 H 0.410 0.590 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.260 0.740 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.154 0.846 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.010 2.492 -13.645 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.035 4.035 3 C -0.053 4.053 4 C -0.089 4.089 5 C -0.135 4.135 6 C -0.051 4.051 7 C -0.126 4.126 8 C -0.003 4.003 9 N -0.341 5.341 10 C 0.293 3.707 11 O -0.424 6.424 12 C 0.269 3.731 13 O -0.442 6.442 14 N -0.305 5.305 15 C 0.047 3.953 16 C 0.001 3.999 17 C -0.543 4.543 18 H 0.075 0.925 19 C -0.164 4.164 20 N -0.528 5.528 21 Si 0.766 3.234 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.193 1.193 25 C -0.230 4.230 26 C -0.224 4.224 27 C -0.132 4.132 28 C -0.087 4.087 29 H 0.161 0.839 30 H 0.168 0.832 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.259 0.741 36 H 0.246 0.754 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.172 0.828 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.834 2.721 -13.635 21.833 hybrid contribution 0.214 0.318 1.201 1.261 sum -16.620 3.040 -12.433 20.977 Atomic orbital electron populations 1.81290 1.13629 1.09552 1.10379 1.26076 0.92987 0.92264 0.92201 1.16149 0.83074 1.00387 1.05721 1.21347 0.94588 0.96678 0.96250 1.21274 0.93403 0.99500 0.99357 1.20029 0.95252 0.94392 0.95439 1.20844 0.90848 1.02658 0.98288 1.21591 0.77047 1.01826 0.99787 1.45678 1.08211 1.52316 1.27867 1.20080 0.87964 0.79953 0.82748 1.90746 1.70119 1.44168 1.37320 1.20317 0.88801 0.81118 0.82817 1.90663 1.70478 1.42581 1.40509 1.45697 1.08925 1.47496 1.28369 1.20897 0.77958 1.01688 0.94748 1.19267 0.96058 0.90226 0.94342 1.20676 1.45724 0.91871 0.96066 0.92542 1.25504 0.95154 0.96273 0.99465 1.69955 1.45743 1.00004 1.37097 0.85822 0.79097 0.77508 0.80943 1.20350 1.21453 1.19269 1.22932 0.91970 1.06853 1.01226 1.22979 1.03634 0.94911 1.00922 1.21288 0.93349 0.98955 0.99642 1.21369 0.94612 0.96497 0.96246 0.83851 0.83243 0.88174 0.87684 0.90679 0.91370 0.74084 0.75419 0.94128 0.89787 0.93014 0.90078 0.90619 0.90011 0.89326 0.82788 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.60 18.54 19.00 0.35 -10.25 16 2 C 0.28 4.65 15.33 88.33 1.35 6.01 16 3 C -0.05 -0.57 5.73 -21.36 -0.12 -0.69 16 4 C -0.07 -0.63 9.76 22.54 0.22 -0.41 16 5 C -0.12 -0.95 9.68 22.23 0.22 -0.74 16 6 C -0.05 -0.40 5.14 -19.80 -0.10 -0.50 16 7 C -0.09 -0.67 5.45 29.85 0.16 -0.51 16 8 C 0.12 1.84 5.66 86.38 0.49 2.33 16 9 N -0.69 -15.01 5.55 -464.41 -2.58 -17.59 16 10 C 0.51 16.66 7.89 87.27 0.69 17.35 16 11 O -0.55 -20.40 16.49 -3.24 -0.05 -20.45 16 12 C 0.49 19.08 7.88 87.27 0.69 19.76 16 13 O -0.56 -23.27 16.50 -3.23 -0.05 -23.33 16 14 N -0.66 -28.01 5.27 -464.42 -2.45 -30.46 16 15 C 0.17 7.71 4.73 86.38 0.41 8.12 16 16 C 0.00 0.08 2.00 -52.93 -0.11 -0.03 16 17 C -0.51 -25.46 8.27 25.60 0.21 -25.25 16 18 H 0.06 2.85 7.83 -2.91 -0.02 2.83 16 19 C 0.04 1.94 5.13 84.65 0.43 2.38 16 20 N -0.89 -47.36 10.72 21.45 0.23 -47.13 16 21 Si 0.94 41.56 29.55 68.60 2.03 43.59 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 C -0.19 -7.89 9.96 30.62 0.30 -7.59 16 26 C -0.19 -7.26 9.92 30.62 0.30 -6.95 16 27 C -0.11 -0.83 9.68 22.23 0.22 -0.61 16 28 C -0.07 -0.58 9.76 22.54 0.22 -0.36 16 29 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 30 H 0.15 0.79 8.06 -2.91 -0.02 0.76 16 31 H 0.10 0.58 8.08 -2.39 -0.02 0.56 16 32 H 0.10 0.50 8.08 -2.39 -0.02 0.48 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.18 8.14 -2.38 -0.02 1.17 16 35 H 0.42 7.82 7.95 -92.71 -0.74 7.08 16 36 H 0.41 17.96 7.40 -92.71 -0.69 17.28 16 37 H 0.04 1.73 8.08 -2.38 -0.02 1.71 16 38 H 0.08 4.38 6.03 -2.39 -0.01 4.37 16 39 H 0.26 13.52 8.32 -92.71 -0.77 12.74 16 40 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 42 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 44 H 0.15 0.54 8.06 -2.91 -0.02 0.51 16 45 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -65.71 398.76 2.68 -63.03 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.38 Total: 30.28 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 5.58 Total: 12.31 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -4.44 Total: -105.43 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.11 Total: -43.78 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -65.71 2.68 -63.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328108861.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.110 kcal (2) G-P(sol) polarization free energy of solvation -65.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds