Wall clock time and date at job start Sat Apr 11 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39638 * 120.14570 * 122.69513 * 3 2 1 5 5 C 1.37951 * 119.84326 * 180.02562 * 4 3 2 6 6 C 1.38367 * 120.15307 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.84945 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47307 * 89.99692 * 7 6 5 9 9 C 1.34776 * 119.99707 * 180.02562 * 8 7 6 10 10 O 1.21343 * 120.00221 * 359.72323 * 9 8 7 11 11 C 1.49449 * 119.99430 * 180.02562 * 9 8 7 12 12 O 1.21350 * 120.00538 * 6.11512 * 11 9 8 13 13 N 1.34783 * 119.99703 * 186.12042 * 11 9 8 14 14 C 1.46920 * 120.63129 * 7.07433 * 13 11 9 15 15 C 1.53198 * 108.77531 * 233.59114 * 14 13 11 16 16 C 1.53036 * 109.30962 * 305.36304 * 15 14 13 17 17 C 1.53036 * 109.54194 * 61.36502 * 16 15 14 18 18 H 1.09008 * 109.49225 * 58.58585 * 17 16 15 19 19 C 1.50701 * 109.50195 * 178.67960 * 17 16 15 20 20 H 1.08002 * 119.99600 * 34.62055 * 19 17 16 21 21 C 1.37876 * 120.00081 * 214.61625 * 19 17 16 22 22 N 1.31510 * 119.99755 * 175.11381 * 21 19 17 23 23 Si 1.86796 * 120.00162 * 355.11856 * 21 19 17 24 24 H 1.48501 * 109.47377 * 95.25915 * 23 21 19 25 25 H 1.48506 * 109.46919 * 215.26032 * 23 21 19 26 26 H 1.48507 * 109.47040 * 335.25566 * 23 21 19 27 27 C 1.46928 * 120.63104 * 186.79591 * 13 11 9 28 28 C 1.38368 * 120.30239 * 0.22601 * 6 5 4 29 29 C 1.37945 * 120.15085 * 359.49716 * 28 6 5 30 30 H 1.07999 * 120.08078 * 0.04580 * 4 3 2 31 31 H 1.07997 * 119.92442 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.46596 * 329.99291 * 7 6 5 33 33 H 1.09000 * 109.46828 * 209.99809 * 7 6 5 34 34 H 0.97002 * 119.99585 * 359.97438 * 8 7 6 35 35 H 1.09000 * 109.58482 * 353.37066 * 14 13 11 36 36 H 1.08991 * 109.59156 * 113.65770 * 14 13 11 37 37 H 1.08997 * 109.49900 * 65.31699 * 15 14 13 38 38 H 1.09002 * 109.49663 * 185.41366 * 15 14 13 39 39 H 1.09003 * 109.46101 * 181.38791 * 16 15 14 40 40 H 1.09001 * 109.46131 * 301.35863 * 16 15 14 41 41 H 0.96998 * 119.99969 * 180.02562 * 22 21 19 42 42 H 1.08994 * 109.58647 * 246.19935 * 27 13 11 43 43 H 1.09000 * 109.58352 * 6.62573 * 27 13 11 44 44 H 1.07997 * 119.92228 * 179.72581 * 28 6 5 45 45 H 1.07994 * 120.07700 * 180.25666 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.6532 -1.0162 5 6 4.6485 0.6495 -1.0104 6 6 5.3375 0.0006 -0.0010 7 6 6.8444 0.0003 -0.0016 8 7 7.3334 1.1623 0.7447 9 6 8.6586 1.3694 0.8767 10 8 9.4467 0.5908 0.3817 11 6 9.1573 2.5545 1.6386 12 8 8.3748 3.2680 2.2313 13 7 10.4761 2.8309 1.6672 14 6 11.4181 2.0726 0.8328 15 6 12.5296 1.5140 1.7270 16 6 13.1692 2.6597 2.5147 17 6 12.1152 3.3176 3.4082 18 1 11.6971 2.5733 4.0860 19 6 12.7532 4.4245 4.2074 20 1 13.5463 5.0156 3.7737 21 6 12.3243 4.6827 5.4920 22 7 12.9438 5.5830 6.2236 23 14 10.8634 3.7538 6.1935 24 1 11.3472 2.5871 6.9745 25 1 10.0837 4.6543 7.0804 26 1 9.9976 3.2816 5.0831 27 6 10.9984 3.9003 2.5288 28 6 4.6491 -0.6524 1.0062 29 6 3.2697 -0.6517 1.0157 30 1 2.7324 1.1600 -1.8047 31 1 5.1919 1.1534 -1.7959 32 1 7.2073 0.0489 -1.0284 33 1 7.2078 -0.9131 0.4692 34 1 6.7033 1.7829 1.1431 35 1 10.8942 1.2508 0.3448 36 1 11.8493 2.7304 0.0782 37 1 12.1076 0.7868 2.4206 38 1 13.2860 1.0311 1.1084 39 1 13.9768 2.2685 3.1334 40 1 13.5690 3.3989 1.8205 41 1 12.6424 5.7644 7.1275 42 1 11.3978 4.7047 1.9114 43 1 10.1973 4.2847 3.1602 44 1 5.1931 -1.1606 1.7885 45 1 2.7337 -1.1583 1.8046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328252554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:06 Heat of formation + Delta-G solvation = -0.984960 kcal Electronic energy + Delta-G solvation = -28365.926006 eV Core-core repulsion = 24348.970950 eV Total energy + Delta-G solvation = -4016.955056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.89451 -40.11556 -38.57783 -37.18868 -37.02568 -35.39092 -33.29755 -32.18214 -31.85561 -31.72806 -30.48437 -27.85507 -25.80033 -25.17150 -23.41380 -23.33239 -22.15827 -21.84619 -20.44189 -19.51247 -19.01583 -17.74372 -16.97921 -16.74617 -16.46174 -16.06876 -15.79806 -15.55590 -15.14877 -14.71717 -14.55316 -14.46167 -14.20510 -14.07063 -14.00415 -13.54481 -13.45911 -13.38817 -13.20404 -12.86772 -12.79553 -12.55226 -12.47595 -12.18818 -12.03334 -11.71422 -11.68278 -11.18927 -10.75363 -10.65953 -10.44658 -10.12841 -9.74427 -9.66302 -9.62820 -9.53685 -9.47913 -9.23062 -8.72834 -8.65696 -8.15732 -6.15083 -4.15777 0.06423 0.72047 1.49732 2.16402 2.20165 2.62137 3.26780 3.29248 3.32192 3.33986 3.37708 3.44985 3.73500 4.01283 4.18111 4.27056 4.38612 4.42844 4.68391 4.70932 5.04060 5.04863 5.16046 5.22943 5.36862 5.43160 5.51892 5.53787 5.66930 5.67309 5.83148 5.88215 6.01094 6.15248 6.19050 6.21428 6.40195 6.48205 6.53625 6.61961 6.77464 6.82783 6.95229 6.97002 7.23628 7.31681 7.61773 7.70267 7.79750 8.20466 8.45139 8.90513 9.47987 10.97304 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.002338 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.835456 B =11972.268147 C =13105.143336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.253 3.747 3 C -0.022 4.022 4 C -0.071 4.071 5 C -0.098 4.098 6 C -0.080 4.080 7 C 0.154 3.846 8 N -0.701 5.701 9 C 0.514 3.486 10 O -0.509 6.509 11 C 0.495 3.505 12 O -0.532 6.532 13 N -0.568 5.568 14 C 0.051 3.949 15 C -0.131 4.131 16 C -0.107 4.107 17 C 0.008 3.992 18 H 0.035 0.965 19 C -0.513 4.513 20 H 0.076 0.924 21 C 0.075 3.925 22 N -0.894 5.894 23 Si 0.870 3.130 24 H -0.279 1.279 25 H -0.287 1.287 26 H -0.257 1.257 27 C 0.107 3.893 28 C -0.098 4.098 29 C -0.071 4.071 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.415 0.585 35 H 0.146 0.854 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.265 0.735 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.139 0.861 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.877 -14.004 -15.910 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.063 4.063 3 C -0.025 4.025 4 C -0.092 4.092 5 C -0.117 4.117 6 C -0.082 4.082 7 C 0.031 3.969 8 N -0.355 5.355 9 C 0.297 3.703 10 O -0.386 6.386 11 C 0.276 3.724 12 O -0.410 6.410 13 N -0.300 5.300 14 C -0.071 4.071 15 C -0.169 4.169 16 C -0.144 4.144 17 C -0.012 4.012 18 H 0.053 0.947 19 C -0.551 4.551 20 H 0.094 0.906 21 C -0.128 4.128 22 N -0.531 5.531 23 Si 0.697 3.303 24 H -0.205 1.205 25 H -0.213 1.213 26 H -0.181 1.181 27 C -0.014 4.014 28 C -0.116 4.116 29 C -0.091 4.091 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.252 0.748 35 H 0.162 0.838 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.156 0.844 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.461 -14.070 -15.764 26.785 hybrid contribution -0.546 -0.010 0.785 0.956 sum -17.007 -14.080 -14.978 26.680 Atomic orbital electron populations 1.81288 1.12076 1.08045 1.07457 1.25720 0.92681 0.93938 0.93965 1.16075 0.84355 1.03518 0.98567 1.21212 0.94195 0.96842 0.96923 1.21096 0.93547 0.98410 0.98627 1.20128 0.95192 0.97559 0.95274 1.20374 0.88761 0.89581 0.98168 1.45865 1.06917 1.27950 1.54751 1.20645 0.82723 0.86646 0.80306 1.90330 1.52928 1.47003 1.48307 1.19825 0.83989 0.85486 0.83105 1.90746 1.54893 1.49756 1.45578 1.48475 1.04951 1.35159 1.41389 1.23139 0.92252 0.98480 0.93191 1.21914 0.97308 0.98934 0.98768 1.21599 0.98811 0.96026 0.98005 1.19554 0.91777 0.96291 0.93553 0.94703 1.20899 1.19973 1.16379 0.97871 0.90607 1.25087 0.96179 0.94753 0.96806 1.69901 1.40223 1.33275 1.09691 0.86942 0.83670 0.80010 0.79633 1.20465 1.21263 1.18090 1.22827 0.98295 0.88105 0.92153 1.21116 0.93575 0.98783 0.98154 1.21218 0.94196 0.96898 0.96805 0.84598 0.84381 0.89489 0.89504 0.74788 0.83791 0.92217 0.92312 0.91750 0.92208 0.92807 0.92514 0.91441 0.89812 0.84355 0.84585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.37 18.54 41.84 0.78 -3.60 16 2 C 0.25 2.00 15.33 -22.47 -0.34 1.66 16 3 C -0.02 -0.12 5.73 -106.93 -0.61 -0.74 16 4 C -0.07 -0.33 9.76 -39.16 -0.38 -0.71 16 5 C -0.10 -0.43 9.68 -39.64 -0.38 -0.82 16 6 C -0.08 -0.41 5.25 -104.53 -0.55 -0.96 16 7 C 0.15 0.99 5.79 -5.20 -0.03 0.96 16 8 N -0.70 -6.66 5.54 -61.91 -0.34 -7.01 16 9 C 0.51 6.83 7.78 -11.59 -0.09 6.74 16 10 O -0.51 -7.10 13.10 5.50 0.07 -7.02 16 11 C 0.49 8.48 7.74 -11.58 -0.09 8.39 16 12 O -0.53 -10.36 15.94 5.50 0.09 -10.27 16 13 N -0.57 -10.24 2.97 -173.01 -0.51 -10.76 16 14 C 0.05 0.77 6.27 -3.71 -0.02 0.75 16 15 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 16 C -0.11 -2.03 5.15 -26.69 -0.14 -2.17 16 17 C 0.01 0.18 1.79 -91.43 -0.16 0.02 16 18 H 0.03 0.83 5.61 -51.92 -0.29 0.54 16 19 C -0.51 -13.81 8.86 -34.44 -0.31 -14.12 16 20 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 22 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 23 Si 0.87 21.52 26.63 -169.99 -4.53 16.99 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.26 -6.28 5.97 56.52 0.34 -5.94 16 27 C 0.11 2.24 5.52 -3.48 -0.02 2.23 16 28 C -0.10 -0.47 9.68 -39.64 -0.38 -0.85 16 29 C -0.07 -0.34 9.76 -39.17 -0.38 -0.72 16 30 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 31 H 0.14 0.42 8.06 -52.49 -0.42 -0.01 16 32 H 0.09 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.09 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.42 3.83 7.95 -40.82 -0.32 3.50 16 35 H 0.15 2.11 3.78 -56.76 -0.21 1.89 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.08 1.95 5.94 -51.93 -0.31 1.64 16 44 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 45 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -33.08 379.38 -7.94 -41.03 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.83 Total: 1.45 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -4.16 Total: -0.57 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.69 Total: -47.32 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.16 Total: -17.30 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.53 Total: 16.99 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.08 -7.94 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328252554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.040 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds