Wall clock time and date at job start Sat Apr 11 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39638 * 120.14570 * 122.69513 * 3 2 1 5 5 C 1.37951 * 119.84326 * 180.02562 * 4 3 2 6 6 C 1.38367 * 120.15307 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.84945 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47307 * 89.99692 * 7 6 5 9 9 C 1.34776 * 119.99707 * 180.02562 * 8 7 6 10 10 O 1.21343 * 120.00221 * 359.72323 * 9 8 7 11 11 C 1.49449 * 119.99430 * 180.02562 * 9 8 7 12 12 O 1.21350 * 120.00538 * 6.11512 * 11 9 8 13 13 N 1.34783 * 119.99703 * 186.12042 * 11 9 8 14 14 C 1.46920 * 120.63129 * 7.07433 * 13 11 9 15 15 C 1.53198 * 108.77531 * 233.59114 * 14 13 11 16 16 C 1.53036 * 109.30962 * 305.36304 * 15 14 13 17 17 C 1.53036 * 109.54194 * 61.36502 * 16 15 14 18 18 H 1.09008 * 109.49225 * 58.58585 * 17 16 15 19 19 C 1.50701 * 109.50195 * 178.67960 * 17 16 15 20 20 H 1.08002 * 119.99600 * 34.62055 * 19 17 16 21 21 C 1.37876 * 120.00081 * 214.61625 * 19 17 16 22 22 N 1.31510 * 119.99755 * 175.11381 * 21 19 17 23 23 Si 1.86796 * 120.00162 * 355.11856 * 21 19 17 24 24 H 1.48501 * 109.47377 * 95.25915 * 23 21 19 25 25 H 1.48506 * 109.46919 * 215.26032 * 23 21 19 26 26 H 1.48507 * 109.47040 * 335.25566 * 23 21 19 27 27 C 1.46928 * 120.63104 * 186.79591 * 13 11 9 28 28 C 1.38368 * 120.30239 * 0.22601 * 6 5 4 29 29 C 1.37945 * 120.15085 * 359.49716 * 28 6 5 30 30 H 1.07999 * 120.08078 * 0.04580 * 4 3 2 31 31 H 1.07997 * 119.92442 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.46596 * 329.99291 * 7 6 5 33 33 H 1.09000 * 109.46828 * 209.99809 * 7 6 5 34 34 H 0.97002 * 119.99585 * 359.97438 * 8 7 6 35 35 H 1.09000 * 109.58482 * 353.37066 * 14 13 11 36 36 H 1.08991 * 109.59156 * 113.65770 * 14 13 11 37 37 H 1.08997 * 109.49900 * 65.31699 * 15 14 13 38 38 H 1.09002 * 109.49663 * 185.41366 * 15 14 13 39 39 H 1.09003 * 109.46101 * 181.38791 * 16 15 14 40 40 H 1.09001 * 109.46131 * 301.35863 * 16 15 14 41 41 H 0.96998 * 119.99969 * 180.02562 * 22 21 19 42 42 H 1.08994 * 109.58647 * 246.19935 * 27 13 11 43 43 H 1.09000 * 109.58352 * 6.62573 * 27 13 11 44 44 H 1.07997 * 119.92228 * 179.72581 * 28 6 5 45 45 H 1.07994 * 120.07700 * 180.25666 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.6532 -1.0162 5 6 4.6485 0.6495 -1.0104 6 6 5.3375 0.0006 -0.0010 7 6 6.8444 0.0003 -0.0016 8 7 7.3334 1.1623 0.7447 9 6 8.6586 1.3694 0.8767 10 8 9.4467 0.5908 0.3817 11 6 9.1573 2.5545 1.6386 12 8 8.3748 3.2680 2.2313 13 7 10.4761 2.8309 1.6672 14 6 11.4181 2.0726 0.8328 15 6 12.5296 1.5140 1.7270 16 6 13.1692 2.6597 2.5147 17 6 12.1152 3.3176 3.4082 18 1 11.6971 2.5733 4.0860 19 6 12.7532 4.4245 4.2074 20 1 13.5463 5.0156 3.7737 21 6 12.3243 4.6827 5.4920 22 7 12.9438 5.5830 6.2236 23 14 10.8634 3.7538 6.1935 24 1 11.3472 2.5871 6.9745 25 1 10.0837 4.6543 7.0804 26 1 9.9976 3.2816 5.0831 27 6 10.9984 3.9003 2.5288 28 6 4.6491 -0.6524 1.0062 29 6 3.2697 -0.6517 1.0157 30 1 2.7324 1.1600 -1.8047 31 1 5.1919 1.1534 -1.7959 32 1 7.2073 0.0489 -1.0284 33 1 7.2078 -0.9131 0.4692 34 1 6.7033 1.7829 1.1431 35 1 10.8942 1.2508 0.3448 36 1 11.8493 2.7304 0.0782 37 1 12.1076 0.7868 2.4206 38 1 13.2860 1.0311 1.1084 39 1 13.9768 2.2685 3.1334 40 1 13.5690 3.3989 1.8205 41 1 12.6424 5.7644 7.1275 42 1 11.3978 4.7047 1.9114 43 1 10.1973 4.2847 3.1602 44 1 5.1931 -1.1606 1.7885 45 1 2.7337 -1.1583 1.8046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328252554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:05 Heat of formation + Delta-G solvation = -22.533906 kcal Electronic energy + Delta-G solvation = -28366.860438 eV Core-core repulsion = 24348.970950 eV Total energy + Delta-G solvation = -4017.889488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.00396 -40.64502 -39.73088 -38.59146 -37.73511 -36.23000 -35.10268 -33.55053 -32.73176 -32.13565 -32.06553 -28.64190 -27.28160 -26.69996 -24.31333 -23.75514 -23.39831 -22.92012 -21.63262 -20.53225 -19.94160 -19.22769 -18.58065 -18.02360 -17.19714 -16.93047 -16.65250 -16.55101 -16.32260 -15.68421 -15.53687 -15.42425 -15.37663 -15.11168 -14.95987 -14.75298 -14.46874 -14.45686 -14.20875 -13.97886 -13.93589 -13.70560 -13.41874 -13.31651 -13.10291 -13.01726 -12.57048 -12.45376 -12.29066 -12.02912 -12.00999 -11.65761 -11.62017 -11.24352 -11.12313 -10.78269 -10.35485 -10.13245 -9.97627 -9.80879 -9.64344 -8.33613 -6.36482 -0.37480 0.33793 0.39557 1.27374 1.32164 1.35599 1.45778 1.56140 1.89018 2.13658 2.30345 2.55828 2.80872 2.90576 3.04287 3.33397 3.57200 3.84377 3.96302 4.09017 4.19656 4.27357 4.32322 4.34344 4.48856 4.57595 4.65858 4.66442 4.72978 4.79121 4.81715 4.90416 4.98462 5.06622 5.12043 5.17199 5.23982 5.31936 5.32929 5.47681 5.51935 5.58776 5.63758 5.68137 5.81333 6.00583 6.28074 6.37213 6.38714 6.68964 6.75626 6.94228 7.29858 8.82691 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.002338 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.835456 B =11972.268147 C =13105.143336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.277 3.723 3 C -0.034 4.034 4 C -0.069 4.069 5 C -0.096 4.096 6 C -0.081 4.081 7 C 0.154 3.846 8 N -0.683 5.683 9 C 0.524 3.476 10 O -0.514 6.514 11 C 0.487 3.513 12 O -0.561 6.561 13 N -0.576 5.576 14 C 0.051 3.949 15 C -0.123 4.123 16 C -0.103 4.103 17 C 0.007 3.993 18 H 0.025 0.975 19 C -0.510 4.510 20 H 0.042 0.958 21 C 0.020 3.980 22 N -0.941 5.941 23 Si 0.932 3.068 24 H -0.269 1.269 25 H -0.287 1.287 26 H -0.255 1.255 27 C 0.117 3.883 28 C -0.099 4.099 29 C -0.070 4.070 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.418 0.582 35 H 0.162 0.838 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.266 0.734 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.150 0.850 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.672 -16.372 -17.834 28.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.037 4.037 3 C -0.038 4.038 4 C -0.089 4.089 5 C -0.114 4.114 6 C -0.082 4.082 7 C 0.032 3.968 8 N -0.335 5.335 9 C 0.305 3.695 10 O -0.392 6.392 11 C 0.270 3.730 12 O -0.441 6.441 13 N -0.308 5.308 14 C -0.069 4.069 15 C -0.161 4.161 16 C -0.141 4.141 17 C -0.013 4.013 18 H 0.043 0.957 19 C -0.548 4.548 20 H 0.060 0.940 21 C -0.178 4.178 22 N -0.581 5.581 23 Si 0.758 3.242 24 H -0.194 1.194 25 H -0.213 1.213 26 H -0.179 1.179 27 C -0.005 4.005 28 C -0.118 4.118 29 C -0.091 4.091 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.255 0.745 35 H 0.178 0.822 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.168 0.832 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.282 -16.476 -17.722 29.735 hybrid contribution -0.265 0.744 1.306 1.526 sum -17.546 -15.732 -16.416 28.720 Atomic orbital electron populations 1.81307 1.13652 1.10085 1.09322 1.26045 0.92964 0.92347 0.92379 1.16194 0.83113 1.04779 0.99677 1.21389 0.94431 0.96299 0.96789 1.21285 0.93411 0.97949 0.98783 1.20075 0.94440 0.97967 0.95699 1.20589 0.89466 0.88283 0.98426 1.45853 1.05412 1.28519 1.53710 1.19761 0.83976 0.85318 0.80440 1.90305 1.53321 1.46730 1.48848 1.20566 0.83326 0.86278 0.82790 1.90726 1.55548 1.51010 1.46788 1.48451 1.06105 1.34806 1.41417 1.23374 0.91757 0.98920 0.92822 1.21869 0.98094 0.97349 0.98763 1.21508 0.97645 0.97235 0.97737 1.19507 0.93128 0.94697 0.93973 0.95677 1.21174 1.18838 1.16632 0.98196 0.93952 1.25836 0.98730 0.95791 0.97489 1.70026 1.42255 1.35507 1.10292 0.85954 0.80522 0.78934 0.78831 1.19425 1.21323 1.17853 1.22256 0.96861 0.89028 0.92321 1.21269 0.93490 0.98664 0.98352 1.21358 0.94392 0.96558 0.96765 0.83248 0.82670 0.88121 0.88750 0.74471 0.82224 0.90798 0.92760 0.88323 0.92929 0.92586 0.92448 0.91460 0.92401 0.83196 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.85 18.54 19.00 0.35 -9.50 16 2 C 0.28 4.15 15.33 88.33 1.35 5.51 16 3 C -0.03 -0.32 5.73 -21.36 -0.12 -0.44 16 4 C -0.07 -0.45 9.76 22.54 0.22 -0.23 16 5 C -0.10 -0.52 9.68 22.23 0.22 -0.31 16 6 C -0.08 -0.55 5.25 -19.80 -0.10 -0.65 16 7 C 0.15 1.38 5.79 85.63 0.50 1.87 16 8 N -0.68 -10.75 5.54 -468.15 -2.59 -13.35 16 9 C 0.52 12.34 7.78 87.27 0.68 13.02 16 10 O -0.51 -12.42 13.10 -3.23 -0.04 -12.46 16 11 C 0.49 15.85 7.74 87.27 0.68 16.52 16 12 O -0.56 -21.32 15.94 -3.25 -0.05 -21.37 16 13 N -0.58 -19.84 2.97 -819.65 -2.43 -22.28 16 14 C 0.05 1.41 6.27 86.37 0.54 1.95 16 15 C -0.12 -3.51 6.08 30.67 0.19 -3.32 16 16 C -0.10 -3.82 5.15 30.62 0.16 -3.66 16 17 C 0.01 0.30 1.79 -11.32 -0.02 0.28 16 18 H 0.02 1.18 5.61 -2.38 -0.01 1.16 16 19 C -0.51 -28.23 8.86 25.60 0.23 -28.00 16 20 H 0.04 2.57 8.06 -2.91 -0.02 2.54 16 21 C 0.02 1.14 5.47 84.65 0.46 1.60 16 22 N -0.94 -58.08 13.96 21.45 0.30 -57.78 16 23 Si 0.93 45.33 26.63 68.60 1.83 47.16 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.25 -12.16 5.97 99.48 0.59 -11.56 16 27 C 0.12 4.93 5.52 86.51 0.48 5.41 16 28 C -0.10 -0.65 9.68 22.23 0.22 -0.43 16 29 C -0.07 -0.52 9.76 22.54 0.22 -0.30 16 30 H 0.15 0.54 8.06 -2.91 -0.02 0.52 16 31 H 0.16 0.32 8.06 -2.91 -0.02 0.30 16 32 H 0.10 0.73 8.08 -2.39 -0.02 0.71 16 33 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 34 H 0.42 6.50 7.95 -92.71 -0.74 5.76 16 35 H 0.16 4.05 3.78 -78.82 -0.30 3.76 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 43 H 0.06 2.72 5.94 -2.39 -0.01 2.70 16 44 H 0.15 0.62 8.06 -2.91 -0.02 0.60 16 45 H 0.15 0.72 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -73.91 379.38 3.14 -70.77 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -0.10 Total: 9.99 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 5.88 Total: 8.82 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -4.37 Total: -102.90 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.09 Total: -33.83 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.83 Total: 47.16 kcal Total: -73.91 3.14 -70.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328252554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.234 kcal (2) G-P(sol) polarization free energy of solvation -73.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds