Wall clock time and date at job start Sat Apr 11 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39634 * 120.14704 * 176.22134 * 3 2 1 5 5 C 1.37948 * 119.84996 * 179.97438 * 4 3 2 6 6 C 1.38363 * 120.14686 * 359.97163 * 5 4 3 7 7 C 1.50693 * 119.84636 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.47256 * 90.00182 * 7 6 5 9 9 C 1.34782 * 120.00166 * 180.02562 * 8 7 6 10 10 O 1.21350 * 119.99528 * 359.97438 * 9 8 7 11 11 C 1.49446 * 120.00084 * 179.97438 * 9 8 7 12 12 O 1.21356 * 119.99803 * 353.37756 * 11 9 8 13 13 N 1.34768 * 120.00057 * 173.37736 * 11 9 8 14 14 C 1.46923 * 120.63140 * 353.06161 * 13 11 9 15 15 C 1.53197 * 108.77603 * 126.41596 * 14 13 11 16 16 C 1.53036 * 109.34037 * 54.62030 * 15 14 13 17 17 C 1.53043 * 109.53781 * 298.68543 * 16 15 14 18 18 H 1.09000 * 109.49772 * 301.34791 * 17 16 15 19 19 C 1.50699 * 109.49861 * 181.28187 * 17 16 15 20 20 H 1.08009 * 119.99826 * 0.06421 * 19 17 16 21 21 C 1.37874 * 120.00391 * 180.34183 * 19 17 16 22 22 N 1.31511 * 119.99935 * 359.72505 * 21 19 17 23 23 Si 1.86803 * 120.00371 * 179.72468 * 21 19 17 24 24 H 1.48501 * 109.46889 * 59.99781 * 23 21 19 25 25 H 1.48493 * 109.47092 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46907 * 300.00065 * 23 21 19 27 27 C 1.46927 * 120.63303 * 173.08900 * 13 11 9 28 28 C 1.38361 * 120.30673 * 0.28147 * 6 5 4 29 29 C 1.37950 * 120.15138 * 359.48675 * 28 6 5 30 30 H 1.08009 * 120.07516 * 359.94607 * 4 3 2 31 31 H 1.07994 * 119.92365 * 179.97438 * 5 4 3 32 32 H 1.09007 * 109.47437 * 329.99969 * 7 6 5 33 33 H 1.09010 * 109.47462 * 209.99992 * 7 6 5 34 34 H 0.96996 * 120.00059 * 359.97438 * 8 7 6 35 35 H 1.08998 * 109.59171 * 246.19792 * 14 13 11 36 36 H 1.09003 * 109.58922 * 6.48999 * 14 13 11 37 37 H 1.08995 * 109.50150 * 174.58993 * 15 14 13 38 38 H 1.09009 * 109.49617 * 294.68452 * 15 14 13 39 39 H 1.08997 * 109.49188 * 178.64856 * 16 15 14 40 40 H 1.09001 * 109.43006 * 58.68768 * 16 15 14 41 41 H 0.97000 * 120.00590 * 180.02562 * 22 21 19 42 42 H 1.09003 * 109.59192 * 113.79627 * 27 13 11 43 43 H 1.08998 * 109.70190 * 353.44355 * 27 13 11 44 44 H 1.07995 * 119.92799 * 179.72493 * 28 6 5 45 45 H 1.08005 * 120.08084 * 180.26005 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 1.2058 -0.0796 5 6 4.6482 1.1993 -0.0786 6 6 5.3374 0.0022 0.0016 7 6 6.8443 0.0031 0.0028 8 7 7.3316 0.0950 1.3813 9 6 8.6565 0.1126 1.6281 10 8 9.4458 0.0518 0.7083 11 6 9.1536 0.2070 3.0343 12 8 8.3707 0.3886 3.9436 13 7 10.4711 0.0905 3.2926 14 6 11.4129 -0.2794 2.2273 15 6 12.5310 0.7665 2.1725 16 6 13.1690 0.8993 3.5572 17 6 12.1157 1.3694 4.5631 18 1 11.7040 2.3251 4.2388 19 6 12.7521 1.5301 5.9196 20 1 13.8032 1.3193 6.0514 21 6 11.9914 1.9408 6.9937 22 7 10.7116 2.1975 6.8333 23 14 12.7786 2.1327 8.6769 24 1 13.8673 3.1398 8.6023 25 1 11.7547 2.5826 9.6538 26 1 13.3397 0.8285 9.1124 27 6 10.9930 0.3303 4.6449 28 6 4.6494 -1.1959 0.0755 29 6 3.2700 -1.2037 0.0802 30 1 2.7319 2.1409 -0.1422 31 1 5.1914 2.1307 -0.1405 32 1 7.2077 0.8572 -0.5687 33 1 7.2086 -0.9189 -0.4506 34 1 6.7007 0.1440 2.1165 35 1 11.8396 -1.2594 2.4407 36 1 10.8901 -0.3088 1.2712 37 1 13.2868 0.4537 1.4522 38 1 12.1154 1.7278 1.8702 39 1 13.9808 1.6255 3.5154 40 1 13.5629 -0.0679 3.8692 41 1 10.1765 2.4868 7.5888 42 1 11.3854 -0.6001 5.0556 43 1 10.1948 0.7045 5.2858 44 1 5.1936 -2.1270 0.1334 45 1 2.7341 -2.1394 0.1421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328252555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:08 Heat of formation + Delta-G solvation = -1.770498 kcal Electronic energy + Delta-G solvation = -28326.553391 eV Core-core repulsion = 24309.564272 eV Total energy + Delta-G solvation = -4016.989119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.69349 -39.99038 -38.33359 -37.02354 -36.85752 -35.25310 -33.28869 -32.08247 -31.71398 -31.64436 -29.76087 -27.71275 -25.62345 -24.98770 -23.32931 -23.20276 -22.02030 -21.81138 -20.31375 -19.43344 -18.88998 -17.50079 -16.70597 -16.37375 -16.31684 -15.78955 -15.59560 -15.31410 -15.04967 -14.59093 -14.56949 -14.38401 -14.17152 -13.99780 -13.79219 -13.36679 -13.32952 -13.28817 -12.95438 -12.70836 -12.64512 -12.60175 -12.10246 -11.94437 -11.79419 -11.59918 -11.43726 -10.98022 -10.73740 -10.49197 -10.29491 -10.09060 -9.91238 -9.57408 -9.48895 -9.38142 -9.22172 -9.13367 -8.55307 -8.43467 -7.85577 -6.03902 -4.12041 0.14919 0.80428 1.72359 2.22833 2.31835 2.78887 3.30225 3.36046 3.37388 3.38351 3.39772 3.59079 3.97051 4.11667 4.26723 4.35078 4.40198 4.66301 4.77289 4.80123 5.13239 5.14149 5.26687 5.33496 5.45405 5.60316 5.62584 5.67094 5.75267 5.82094 5.97556 6.01036 6.22624 6.24298 6.37285 6.56283 6.58891 6.72082 6.84129 6.97439 7.00833 7.03320 7.15027 7.16780 7.56916 7.80332 7.92029 7.93668 8.12990 8.32948 8.53907 8.91749 9.53533 11.01696 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.002198 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.380294 B =12735.724211 C =14013.143868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.254 3.746 3 C -0.023 4.023 4 C -0.071 4.071 5 C -0.098 4.098 6 C -0.079 4.079 7 C 0.154 3.846 8 N -0.702 5.702 9 C 0.514 3.486 10 O -0.513 6.513 11 C 0.494 3.506 12 O -0.524 6.524 13 N -0.566 5.566 14 C 0.050 3.950 15 C -0.127 4.127 16 C -0.113 4.113 17 C 0.041 3.959 18 H 0.029 0.971 19 C -0.519 4.519 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.883 5.883 23 Si 0.894 3.106 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.108 3.892 28 C -0.099 4.099 29 C -0.071 4.071 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.415 0.585 35 H 0.054 0.946 36 H 0.144 0.856 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.264 0.736 42 H 0.048 0.952 43 H 0.124 0.876 44 H 0.138 0.862 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.519 -6.069 -16.885 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.062 4.062 3 C -0.027 4.027 4 C -0.091 4.091 5 C -0.116 4.116 6 C -0.080 4.080 7 C 0.031 3.969 8 N -0.356 5.356 9 C 0.297 3.703 10 O -0.390 6.390 11 C 0.275 3.725 12 O -0.401 6.401 13 N -0.298 5.298 14 C -0.072 4.072 15 C -0.166 4.166 16 C -0.151 4.151 17 C 0.022 3.978 18 H 0.047 0.953 19 C -0.558 4.558 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.521 5.521 23 Si 0.722 3.278 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.012 4.012 28 C -0.117 4.117 29 C -0.092 4.092 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.252 0.748 35 H 0.073 0.927 36 H 0.160 0.840 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.141 0.859 44 H 0.156 0.844 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.280 -5.959 -16.935 21.751 hybrid contribution 0.610 0.163 1.360 1.499 sum -11.670 -5.796 -15.575 20.307 Atomic orbital electron populations 1.81280 1.12094 1.07125 1.08550 1.25728 0.92687 0.93922 0.93853 1.16070 0.84324 0.95199 1.07064 1.21218 0.94213 0.96831 0.96844 1.21120 0.93549 0.98307 0.98635 1.20140 0.95273 0.93612 0.98965 1.20357 0.88685 1.04125 0.83735 1.45870 1.07046 1.73491 1.09187 1.20834 0.82591 0.76196 0.90715 1.90316 1.52905 1.49078 1.46684 1.19714 0.84158 0.80630 0.87972 1.90770 1.54664 1.48951 1.45718 1.48447 1.04812 1.63380 1.13154 1.23079 0.92342 0.97143 0.94599 1.21855 0.97190 0.99033 0.98486 1.21665 0.99070 1.00385 0.93984 1.18972 0.90900 0.94094 0.93883 0.95258 1.21059 0.95632 1.46047 0.93047 0.92294 1.25057 0.94913 0.94918 0.99175 1.69852 1.05666 1.45106 1.31458 0.86624 0.78957 0.78544 0.83694 1.20260 1.21247 1.20217 1.22496 1.00797 0.98739 0.79133 1.21092 0.93537 0.98274 0.98815 1.21201 0.94191 0.96829 0.96966 0.84608 0.84321 0.89594 0.89621 0.74788 0.92723 0.84015 0.92270 0.92332 0.93070 0.93255 0.92556 0.93372 0.85854 0.84407 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.59 18.54 41.84 0.78 -3.81 16 2 C 0.25 2.15 15.33 -22.47 -0.34 1.80 16 3 C -0.02 -0.15 5.73 -106.93 -0.61 -0.76 16 4 C -0.07 -0.39 9.76 -39.17 -0.38 -0.77 16 5 C -0.10 -0.54 9.68 -39.64 -0.38 -0.92 16 6 C -0.08 -0.47 5.25 -104.53 -0.55 -1.02 16 7 C 0.15 1.14 5.79 -5.20 -0.03 1.11 16 8 N -0.70 -7.55 5.54 -61.90 -0.34 -7.89 16 9 C 0.51 7.57 7.78 -11.58 -0.09 7.48 16 10 O -0.51 -7.86 13.10 5.50 0.07 -7.78 16 11 C 0.49 9.41 7.74 -11.59 -0.09 9.32 16 12 O -0.52 -11.37 15.95 5.49 0.09 -11.28 16 13 N -0.57 -11.36 2.97 -173.27 -0.51 -11.88 16 14 C 0.05 0.85 6.27 -3.71 -0.02 0.83 16 15 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 16 C -0.11 -2.28 5.11 -26.69 -0.14 -2.42 16 17 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 18 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 19 C -0.52 -13.86 8.57 -34.44 -0.30 -14.16 16 20 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 21 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 22 N -0.88 -25.10 11.38 55.43 0.63 -24.47 16 23 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.11 2.56 5.38 -3.71 -0.02 2.54 16 28 C -0.10 -0.51 9.68 -39.64 -0.38 -0.89 16 29 C -0.07 -0.37 9.76 -39.17 -0.38 -0.76 16 30 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 31 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 32 H 0.09 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.09 0.58 8.08 -51.92 -0.42 0.17 16 34 H 0.42 4.38 7.95 -40.82 -0.32 4.05 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.14 2.30 3.78 -56.75 -0.21 2.08 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.12 3.36 5.17 -51.93 -0.27 3.09 16 44 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 45 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 LS Contribution 382.14 15.07 5.76 5.76 Total: -1.00 -31.87 382.14 -8.58 -40.45 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.84 Total: 3.58 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -4.19 Total: 1.43 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.55 Total: -48.05 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.16 Total: -19.06 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.87 -8.58 -40.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328252555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.676 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds