Wall clock time and date at job start Sat Apr 11 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00285 * 2 1 4 4 H 1.48498 * 109.47302 * 270.00397 * 3 2 1 5 5 H 1.48506 * 109.46872 * 30.00669 * 3 2 1 6 6 H 1.48500 * 109.46915 * 150.00167 * 3 2 1 7 7 C 1.38817 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99757 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00023 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99631 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46831 * 179.97438 * 10 9 7 12 12 H 1.08997 * 112.85184 * 316.19471 * 11 10 9 13 13 C 1.53782 * 113.68982 * 87.46166 * 11 10 9 14 14 C 1.53782 * 87.07895 * 139.99158 * 13 11 10 15 15 H 1.09005 * 113.68562 * 220.00719 * 14 13 11 16 16 N 1.46504 * 113.61434 * 89.11809 * 14 13 11 17 17 C 1.34770 * 119.99848 * 107.50268 * 16 14 13 18 18 O 1.21728 * 120.00477 * 359.97438 * 17 16 14 19 19 C 1.46398 * 119.99770 * 179.72443 * 17 16 14 20 20 O 1.35377 * 126.81952 * 6.04250 * 19 17 16 21 21 C 1.33663 * 107.95539 * 179.83562 * 20 19 17 22 22 N 1.30362 * 109.72485 * 0.44204 * 21 20 19 23 23 C 1.34545 * 109.01887 * 359.72345 * 22 21 20 24 24 C 1.48126 * 126.53105 * 180.02562 * 23 22 21 25 25 C 1.39471 * 120.13336 * 44.12990 * 24 23 22 26 26 C 1.37992 * 119.86003 * 179.74254 * 25 24 23 27 27 C 1.38346 * 120.13394 * 0.50949 * 26 25 24 28 28 C 1.38348 * 120.27173 * 359.76349 * 27 26 25 29 29 C 1.37986 * 120.13435 * 359.97438 * 28 27 26 30 30 C 1.53781 * 87.08340 * 334.56718 * 14 13 11 31 31 H 0.97003 * 119.99763 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00169 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.47386 * 59.99895 * 10 9 7 34 34 H 1.08992 * 109.46996 * 299.99372 * 10 9 7 35 35 H 1.09003 * 113.61563 * 25.44270 * 13 11 10 36 36 H 1.08995 * 113.61317 * 254.54048 * 13 11 10 37 37 H 0.96994 * 119.99535 * 287.49868 * 16 14 13 38 38 H 1.08004 * 125.13597 * 180.16176 * 21 20 19 39 39 H 1.07999 * 120.07099 * 359.97438 * 25 24 23 40 40 H 1.08002 * 119.92952 * 180.23133 * 26 25 24 41 41 H 1.08000 * 119.86642 * 179.74491 * 27 26 25 42 42 H 1.07997 * 119.93144 * 179.97438 * 28 27 26 43 43 H 1.07999 * 120.06514 * 180.02562 * 29 28 27 44 44 H 1.08996 * 113.61651 * 139.97580 * 30 14 13 45 45 H 1.09001 * 113.61259 * 270.88952 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0022 11 6 5.6163 -2.1915 -0.0032 12 1 5.8995 -1.4011 -0.6984 13 6 6.2135 -2.0179 1.4032 14 6 7.4259 -2.8201 0.9018 15 1 7.8162 -3.5271 1.6338 16 7 8.4714 -1.9888 0.3000 17 6 9.6299 -1.7827 0.9571 18 8 9.8074 -2.2868 2.0507 19 6 10.6771 -0.9569 0.3531 20 8 10.5882 -0.2461 -0.7956 21 6 11.7586 0.3693 -0.9910 22 7 12.5798 0.0700 -0.0238 23 6 11.9581 -0.7525 0.8405 24 6 12.5332 -1.3293 2.0778 25 6 13.2797 -0.5289 2.9422 26 6 13.8084 -1.0707 4.0959 27 6 13.6081 -2.4075 4.3905 28 6 12.8734 -3.2080 3.5341 29 6 12.3351 -2.6764 2.3801 30 6 6.4783 -3.4589 -0.1272 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3622 -0.0014 33 1 3.8484 -3.0420 -0.8924 34 1 3.8491 -3.0431 0.8875 35 1 5.6468 -2.5253 2.1839 36 1 6.4477 -0.9832 1.6534 37 1 8.3298 -1.5869 -0.5713 38 1 11.9904 1.0132 -1.8266 39 1 13.4405 0.5138 2.7110 40 1 14.3835 -0.4510 4.7680 41 1 14.0274 -2.8281 5.2926 42 1 12.7208 -4.2509 3.7692 43 1 11.7613 -3.3021 1.7125 44 1 6.9263 -3.5875 -1.1125 45 1 5.9840 -4.3603 0.2351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330610123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:13 Heat of formation + Delta-G solvation = 54.978754 kcal Electronic energy + Delta-G solvation = -28325.968155 eV Core-core repulsion = 24311.439868 eV Total energy + Delta-G solvation = -4014.528287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.76466 -40.36846 -39.28104 -38.42814 -35.59092 -34.75258 -33.34593 -32.22228 -31.20391 -31.14006 -29.67070 -27.33228 -25.68133 -24.97036 -23.80811 -23.23477 -22.60137 -21.74793 -21.39572 -20.88281 -19.35589 -18.78500 -17.69789 -17.46567 -17.24095 -16.59946 -16.24490 -15.49945 -15.24707 -15.05405 -14.99639 -14.62673 -14.41745 -14.27770 -14.01391 -13.68018 -13.63716 -13.42619 -13.01260 -12.69892 -12.53334 -12.39407 -11.92845 -11.88059 -11.62582 -11.46938 -11.40350 -11.17636 -10.92759 -10.77205 -10.51592 -10.31858 -10.20732 -9.97310 -9.78446 -9.59447 -9.28447 -9.08347 -8.89125 -8.68906 -7.22986 -5.77639 -3.12705 0.17927 1.07777 1.23310 1.98624 2.06848 2.72370 2.82121 3.35892 3.38534 3.43872 3.46220 3.61616 4.20207 4.37288 4.50077 4.57393 4.59514 4.73642 4.74102 4.87752 4.92144 4.93551 4.98742 5.01786 5.24252 5.35123 5.49480 5.51753 5.53359 5.63124 5.73063 5.75007 5.78656 5.80808 5.89532 6.01006 6.04110 6.17449 6.22025 6.26188 6.29026 6.42986 6.65433 6.71559 6.77570 6.96200 7.19193 7.73043 7.98977 8.41704 9.21046 9.93570 10.13596 11.40903 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015483 B = 0.002284 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.040836 B =12256.495504 C =12795.366572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.756 5.756 10 C 0.167 3.833 11 C -0.120 4.120 12 H 0.086 0.914 13 C -0.140 4.140 14 C 0.115 3.885 15 H 0.106 0.894 16 N -0.696 5.696 17 C 0.607 3.393 18 O -0.502 6.502 19 C -0.101 4.101 20 O -0.186 6.186 21 C 0.206 3.794 22 N -0.483 5.483 23 C 0.119 3.881 24 C -0.030 4.030 25 C -0.083 4.083 26 C -0.131 4.131 27 C -0.105 4.105 28 C -0.125 4.125 29 C -0.054 4.054 30 C -0.135 4.135 31 H 0.259 0.741 32 H 0.360 0.640 33 H 0.027 0.973 34 H 0.029 0.971 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.406 0.594 38 H 0.259 0.741 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.071 0.929 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.158 -4.393 1.367 31.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.401 5.401 10 C 0.040 3.960 11 C -0.139 4.139 12 H 0.104 0.896 13 C -0.179 4.179 14 C 0.010 3.990 15 H 0.124 0.876 16 N -0.346 5.346 17 C 0.392 3.608 18 O -0.379 6.379 19 C -0.157 4.157 20 O -0.072 6.072 21 C -0.020 4.020 22 N -0.211 5.211 23 C -0.004 4.004 24 C -0.031 4.031 25 C -0.101 4.101 26 C -0.149 4.149 27 C -0.123 4.123 28 C -0.143 4.143 29 C -0.072 4.072 30 C -0.173 4.173 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.241 0.759 38 H 0.274 0.726 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.090 0.910 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 31.581 -4.616 2.134 31.987 hybrid contribution -0.294 1.569 -0.767 1.771 sum 31.287 -3.047 1.367 31.464 Atomic orbital electron populations 1.69704 1.05091 1.25795 1.57690 1.24684 0.95254 0.97216 1.02145 0.86534 0.79227 0.85000 0.77692 1.21145 1.21733 1.20377 1.19075 0.80727 0.94714 1.42823 0.89242 1.42702 1.03991 1.02279 1.91130 1.20614 0.87557 0.89261 0.98590 1.22838 0.96622 0.97322 0.97088 0.89568 1.23461 0.95613 1.00968 0.97852 1.22050 0.86685 0.93400 0.96862 0.87616 1.45606 1.15137 1.51373 1.22439 1.16190 0.80363 0.79679 0.84555 1.90948 1.78953 1.49312 1.18643 1.23440 0.98504 1.04406 0.89358 1.84511 1.37947 1.48637 1.36090 1.28315 0.77916 0.96251 0.99519 1.70520 1.32316 1.14719 1.03548 1.20587 0.89104 0.95460 0.95271 1.17608 1.00280 0.93692 0.91529 1.21131 0.95720 0.99593 0.93676 1.21033 1.01069 0.95566 0.97215 1.21274 0.97924 0.93966 0.99167 1.21035 0.98507 1.00214 0.94560 1.21097 0.95723 0.93467 0.96947 1.23304 0.96419 0.98674 0.98933 0.93077 0.80748 0.95469 0.95305 0.88523 0.91392 0.75899 0.72570 0.85806 0.85731 0.85911 0.85650 0.85852 0.91015 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.53 13.97 55.49 0.78 -28.75 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.89 22.22 27.73 -169.99 -4.71 17.51 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 7 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 9 N -0.76 -17.83 5.41 -59.91 -0.32 -18.15 16 10 C 0.17 3.08 6.10 -4.04 -0.02 3.06 16 11 C -0.12 -1.66 3.63 -89.80 -0.33 -1.99 16 12 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.14 -1.87 7.43 -25.92 -0.19 -2.06 16 14 C 0.11 1.27 4.32 -67.12 -0.29 0.98 16 15 H 0.11 1.20 7.46 -51.93 -0.39 0.81 16 16 N -0.70 -7.37 5.26 -54.41 -0.29 -7.65 16 17 C 0.61 7.36 7.54 -12.98 -0.10 7.26 16 18 O -0.50 -7.13 12.85 5.16 0.07 -7.07 16 19 C -0.10 -1.14 7.21 -36.17 -0.26 -1.41 16 20 O -0.19 -1.69 10.57 4.33 0.05 -1.65 16 21 C 0.21 1.47 13.16 52.14 0.69 2.15 16 22 N -0.48 -5.01 11.28 -11.02 -0.12 -5.13 16 23 C 0.12 1.40 6.64 -82.49 -0.55 0.85 16 24 C -0.03 -0.36 5.43 -104.92 -0.57 -0.93 16 25 C -0.08 -0.87 9.79 -39.21 -0.38 -1.25 16 26 C -0.13 -1.16 10.03 -39.63 -0.40 -1.56 16 27 C -0.11 -0.90 10.04 -39.50 -0.40 -1.30 16 28 C -0.13 -1.19 10.03 -39.63 -0.40 -1.59 16 29 C -0.05 -0.60 7.58 -39.21 -0.30 -0.90 16 30 C -0.13 -1.42 7.39 -25.92 -0.19 -1.61 16 31 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 32 H 0.36 8.32 5.53 -40.82 -0.23 8.09 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.03 0.54 7.85 -51.93 -0.41 0.14 16 35 H 0.10 1.30 7.90 -51.93 -0.41 0.89 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.41 3.70 8.51 -40.82 -0.35 3.35 16 38 H 0.26 0.40 8.06 -52.48 -0.42 -0.03 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 1.39 6.89 -52.49 -0.36 1.03 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.10 0.99 8.10 -51.93 -0.42 0.56 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -35.45 381.57 -8.71 -44.16 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.96 Total: 8.37 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.94 Total: -7.39 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.04 Total: -59.69 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.11 Total: -8.72 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.45 -8.71 -44.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330610123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.137 kcal (2) G-P(sol) polarization free energy of solvation -35.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds