Wall clock time and date at job start Sat Apr 11 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00285 * 2 1 4 4 H 1.48498 * 109.47302 * 270.00397 * 3 2 1 5 5 H 1.48506 * 109.46872 * 30.00669 * 3 2 1 6 6 H 1.48500 * 109.46915 * 150.00167 * 3 2 1 7 7 C 1.38817 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99757 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00023 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99631 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46831 * 179.97438 * 10 9 7 12 12 H 1.08997 * 112.85184 * 316.19471 * 11 10 9 13 13 C 1.53782 * 113.68982 * 87.46166 * 11 10 9 14 14 C 1.53782 * 87.07895 * 139.99158 * 13 11 10 15 15 H 1.09005 * 113.68562 * 220.00719 * 14 13 11 16 16 N 1.46504 * 113.61434 * 89.11809 * 14 13 11 17 17 C 1.34770 * 119.99848 * 107.50268 * 16 14 13 18 18 O 1.21728 * 120.00477 * 359.97438 * 17 16 14 19 19 C 1.46398 * 119.99770 * 179.72443 * 17 16 14 20 20 O 1.35377 * 126.81952 * 6.04250 * 19 17 16 21 21 C 1.33663 * 107.95539 * 179.83562 * 20 19 17 22 22 N 1.30362 * 109.72485 * 0.44204 * 21 20 19 23 23 C 1.34545 * 109.01887 * 359.72345 * 22 21 20 24 24 C 1.48126 * 126.53105 * 180.02562 * 23 22 21 25 25 C 1.39471 * 120.13336 * 44.12990 * 24 23 22 26 26 C 1.37992 * 119.86003 * 179.74254 * 25 24 23 27 27 C 1.38346 * 120.13394 * 0.50949 * 26 25 24 28 28 C 1.38348 * 120.27173 * 359.76349 * 27 26 25 29 29 C 1.37986 * 120.13435 * 359.97438 * 28 27 26 30 30 C 1.53781 * 87.08340 * 334.56718 * 14 13 11 31 31 H 0.97003 * 119.99763 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00169 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.47386 * 59.99895 * 10 9 7 34 34 H 1.08992 * 109.46996 * 299.99372 * 10 9 7 35 35 H 1.09003 * 113.61563 * 25.44270 * 13 11 10 36 36 H 1.08995 * 113.61317 * 254.54048 * 13 11 10 37 37 H 0.96994 * 119.99535 * 287.49868 * 16 14 13 38 38 H 1.08004 * 125.13597 * 180.16176 * 21 20 19 39 39 H 1.07999 * 120.07099 * 359.97438 * 25 24 23 40 40 H 1.08002 * 119.92952 * 180.23133 * 26 25 24 41 41 H 1.08000 * 119.86642 * 179.74491 * 27 26 25 42 42 H 1.07997 * 119.93144 * 179.97438 * 28 27 26 43 43 H 1.07999 * 120.06514 * 180.02562 * 29 28 27 44 44 H 1.08996 * 113.61651 * 139.97580 * 30 14 13 45 45 H 1.09001 * 113.61259 * 270.88952 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0022 11 6 5.6163 -2.1915 -0.0032 12 1 5.8995 -1.4011 -0.6984 13 6 6.2135 -2.0179 1.4032 14 6 7.4259 -2.8201 0.9018 15 1 7.8162 -3.5271 1.6338 16 7 8.4714 -1.9888 0.3000 17 6 9.6299 -1.7827 0.9571 18 8 9.8074 -2.2868 2.0507 19 6 10.6771 -0.9569 0.3531 20 8 10.5882 -0.2461 -0.7956 21 6 11.7586 0.3693 -0.9910 22 7 12.5798 0.0700 -0.0238 23 6 11.9581 -0.7525 0.8405 24 6 12.5332 -1.3293 2.0778 25 6 13.2797 -0.5289 2.9422 26 6 13.8084 -1.0707 4.0959 27 6 13.6081 -2.4075 4.3905 28 6 12.8734 -3.2080 3.5341 29 6 12.3351 -2.6764 2.3801 30 6 6.4783 -3.4589 -0.1272 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3622 -0.0014 33 1 3.8484 -3.0420 -0.8924 34 1 3.8491 -3.0431 0.8875 35 1 5.6468 -2.5253 2.1839 36 1 6.4477 -0.9832 1.6534 37 1 8.3298 -1.5869 -0.5713 38 1 11.9904 1.0132 -1.8266 39 1 13.4405 0.5138 2.7110 40 1 14.3835 -0.4510 4.7680 41 1 14.0274 -2.8281 5.2926 42 1 12.7208 -4.2509 3.7692 43 1 11.7613 -3.3021 1.7125 44 1 6.9263 -3.5875 -1.1125 45 1 5.9840 -4.3603 0.2351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330610123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:12 Heat of formation + Delta-G solvation = 29.072874 kcal Electronic energy + Delta-G solvation = -28327.091518 eV Core-core repulsion = 24311.439868 eV Total energy + Delta-G solvation = -4015.651650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.45441 -41.31368 -40.02795 -39.41411 -36.56571 -36.22297 -34.53346 -33.26346 -32.87993 -31.85646 -30.47023 -28.84037 -26.66133 -25.92136 -24.70815 -24.46791 -23.45990 -22.98237 -22.45541 -21.65330 -20.53459 -19.57256 -19.49263 -18.32324 -17.95427 -17.26074 -17.16505 -16.68993 -16.21936 -16.19131 -15.91168 -15.81808 -15.76662 -15.20070 -15.06525 -14.98751 -14.50622 -14.36550 -14.29514 -13.94637 -13.73893 -13.51808 -13.39453 -13.03210 -12.76091 -12.62816 -12.30947 -12.19895 -12.11492 -11.90094 -11.89017 -11.76957 -11.46755 -11.41907 -11.21918 -10.90945 -10.54858 -10.17335 -9.82584 -9.43483 -9.28423 -8.03979 -5.36702 -0.58355 0.38272 0.50369 1.27188 1.35465 1.37032 1.39243 1.46680 1.87098 2.02937 2.46877 2.81547 2.94884 3.26777 3.45122 3.51440 3.55084 3.64499 3.83164 3.90609 4.03910 4.05839 4.09161 4.21063 4.29717 4.31945 4.50595 4.56939 4.64999 4.69428 4.81167 4.84012 4.87871 4.89528 4.97178 5.08917 5.09956 5.10743 5.21413 5.27853 5.50880 5.54035 5.57234 5.58406 5.75551 6.02674 6.18697 6.20642 6.44952 6.88193 7.07599 7.85143 8.03443 9.17737 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015483 B = 0.002284 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.040836 B =12256.495504 C =12795.366572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.254 1.254 7 C -0.234 4.234 8 H 0.056 0.944 9 N -0.759 5.759 10 C 0.162 3.838 11 C -0.117 4.117 12 H 0.092 0.908 13 C -0.145 4.145 14 C 0.126 3.874 15 H 0.106 0.894 16 N -0.687 5.687 17 C 0.607 3.393 18 O -0.530 6.530 19 C -0.122 4.122 20 O -0.186 6.186 21 C 0.232 3.768 22 N -0.515 5.515 23 C 0.110 3.890 24 C -0.054 4.054 25 C -0.097 4.097 26 C -0.132 4.132 27 C -0.105 4.105 28 C -0.133 4.133 29 C -0.070 4.070 30 C -0.115 4.115 31 H 0.258 0.742 32 H 0.365 0.635 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.414 0.586 38 H 0.311 0.689 39 H 0.126 0.874 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.142 0.858 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.038 -3.714 0.906 34.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.179 1.179 7 C -0.365 4.365 8 H 0.074 0.926 9 N -0.404 5.404 10 C 0.036 3.964 11 C -0.136 4.136 12 H 0.110 0.890 13 C -0.184 4.184 14 C 0.021 3.979 15 H 0.124 0.876 16 N -0.338 5.338 17 C 0.393 3.607 18 O -0.408 6.408 19 C -0.178 4.178 20 O -0.072 6.072 21 C 0.007 3.993 22 N -0.242 5.242 23 C -0.013 4.013 24 C -0.055 4.055 25 C -0.116 4.116 26 C -0.150 4.150 27 C -0.123 4.123 28 C -0.151 4.151 29 C -0.089 4.089 30 C -0.154 4.154 31 H 0.066 0.934 32 H 0.198 0.802 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.251 0.749 38 H 0.326 0.674 39 H 0.144 0.856 40 H 0.168 0.832 41 H 0.169 0.831 42 H 0.160 0.840 43 H 0.132 0.868 44 H 0.111 0.889 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 34.512 -3.966 1.657 34.778 hybrid contribution -1.162 1.294 -0.642 1.854 sum 33.350 -2.672 1.015 33.472 Atomic orbital electron populations 1.69891 1.07145 1.26672 1.59844 1.25548 0.96173 1.01369 1.02796 0.85369 0.78493 0.79503 0.78166 1.20120 1.22378 1.17910 1.19077 0.82945 0.93441 1.41072 0.92598 1.42743 1.02371 1.04401 1.90893 1.20823 0.90235 0.87136 0.98190 1.22784 0.93471 0.99598 0.97724 0.88981 1.23480 0.96810 1.00593 0.97469 1.21887 0.86143 0.92878 0.97008 0.87628 1.45519 1.14541 1.51108 1.22605 1.16299 0.80708 0.79439 0.84271 1.90925 1.79567 1.50473 1.19849 1.23169 0.98288 1.05804 0.90549 1.84516 1.38733 1.48686 1.35273 1.29556 0.76385 0.94172 0.99153 1.70538 1.33379 1.15707 1.04572 1.20781 0.89469 0.95506 0.95495 1.17870 1.01152 0.94216 0.92263 1.21303 0.96157 0.99773 0.94365 1.21385 1.00576 0.96136 0.96883 1.21640 0.97131 0.93796 0.99770 1.21336 0.98309 1.01320 0.94162 1.21145 0.96475 0.93496 0.97745 1.23234 0.94885 0.97333 0.99921 0.93357 0.80226 0.95499 0.95644 0.88982 0.92636 0.74877 0.67446 0.85616 0.83219 0.83061 0.83978 0.86812 0.88922 0.87158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.71 13.97 21.65 0.30 -63.41 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 3 Si 0.96 45.77 27.73 68.60 1.90 47.68 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 6 H -0.25 -11.04 6.52 99.48 0.65 -10.39 16 7 C -0.23 -13.49 10.47 84.04 0.88 -12.61 16 8 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 9 N -0.76 -35.18 5.41 -343.45 -1.86 -37.04 16 10 C 0.16 5.83 6.10 86.38 0.53 6.35 16 11 C -0.12 -3.01 3.63 -10.27 -0.04 -3.05 16 12 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 13 C -0.14 -3.67 7.43 31.12 0.23 -3.44 16 14 C 0.13 2.58 4.32 45.52 0.20 2.77 16 15 H 0.11 2.25 7.46 -2.38 -0.02 2.23 16 16 N -0.69 -13.52 5.26 -444.25 -2.34 -15.85 16 17 C 0.61 14.42 7.54 86.37 0.65 15.07 16 18 O -0.53 -15.16 12.85 -4.44 -0.06 -15.22 16 19 C -0.12 -2.69 7.21 24.48 0.18 -2.51 16 20 O -0.19 -3.01 10.57 -7.44 -0.08 -3.09 16 21 C 0.23 2.70 13.16 130.46 1.72 4.41 16 22 N -0.51 -10.03 11.28 -303.69 -3.43 -13.46 16 23 C 0.11 2.57 6.64 41.44 0.28 2.84 16 24 C -0.05 -1.29 5.43 -20.06 -0.11 -1.40 16 25 C -0.10 -2.02 9.79 22.51 0.22 -1.80 16 26 C -0.13 -2.17 10.03 22.24 0.22 -1.94 16 27 C -0.11 -1.64 10.04 22.32 0.22 -1.41 16 28 C -0.13 -2.46 10.03 22.24 0.22 -2.24 16 29 C -0.07 -1.59 7.58 22.51 0.17 -1.42 16 30 C -0.12 -2.12 7.39 31.12 0.23 -1.89 16 31 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 32 H 0.36 16.15 5.53 -92.71 -0.51 15.64 16 33 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.03 0.94 7.85 -2.39 -0.02 0.92 16 35 H 0.09 2.41 7.90 -2.39 -0.02 2.39 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.41 6.66 8.51 -92.71 -0.79 5.87 16 38 H 0.31 -0.43 8.06 -2.91 -0.02 -0.46 16 39 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 40 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.11 2.70 6.89 -2.91 -0.02 2.68 16 44 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.11 1.87 8.10 -2.39 -0.02 1.85 16 Total: -1.00 -79.52 381.57 0.40 -79.13 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -0.32 Total: 27.09 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 6.27 Total: -5.82 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -7.32 Total: -129.76 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.14 Total: -18.31 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.90 Total: 47.68 kcal Total: -79.52 0.40 -79.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330610123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.200 kcal (2) G-P(sol) polarization free energy of solvation -79.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds