Wall clock time and date at job start Sat Apr 11 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99913 * 2 1 4 4 H 1.48497 * 109.46911 * 240.00123 * 3 2 1 5 5 H 1.48505 * 109.46732 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47139 * 119.99567 * 3 2 1 7 7 C 1.37878 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00373 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99592 * 0.02562 * 7 2 1 10 10 C 1.53038 * 109.45780 * 179.97438 * 9 7 2 11 11 C 1.53187 * 109.31209 * 181.38265 * 10 9 7 12 12 N 1.46921 * 108.77967 * 305.36912 * 11 10 9 13 13 C 1.34777 * 120.63495 * 233.58535 * 12 11 10 14 14 O 1.21278 * 119.99593 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.00357 * 180.02562 * 13 12 11 16 16 H 1.09002 * 115.55960 * 321.74973 * 15 13 12 17 17 C 1.52982 * 117.49852 * 176.07353 * 15 13 12 18 18 C 1.53084 * 60.03676 * 252.50349 * 17 15 13 19 19 C 1.52934 * 117.39054 * 252.69954 * 18 17 15 20 20 C 1.53030 * 109.70508 * 278.75452 * 19 18 17 21 21 S 1.81556 * 109.19463 * 299.23385 * 20 19 18 22 22 O 1.42097 * 108.62611 * 302.41914 * 21 20 19 23 23 O 1.42095 * 108.62751 * 171.21129 * 21 20 19 24 24 C 1.81559 * 101.57283 * 56.81484 * 21 20 19 25 25 C 1.52929 * 117.39463 * 107.30472 * 18 17 15 26 26 C 1.46931 * 118.73688 * 53.85700 * 12 11 10 27 27 C 1.53038 * 109.45980 * 300.06646 * 9 7 2 28 28 H 0.97001 * 120.00430 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.45765 * 60.02907 * 9 7 2 30 30 H 1.09004 * 109.49448 * 61.43979 * 10 9 7 31 31 H 1.08996 * 109.52925 * 301.35496 * 10 9 7 32 32 H 1.09000 * 109.58823 * 185.58049 * 11 10 9 33 33 H 1.09007 * 109.70231 * 65.22993 * 11 10 9 34 34 H 1.09001 * 117.49147 * 145.00207 * 17 15 13 35 35 H 1.08993 * 117.49520 * 0.02562 * 17 15 13 36 36 H 1.08994 * 109.43005 * 38.82608 * 19 18 17 37 37 H 1.08998 * 109.42943 * 158.68520 * 19 18 17 38 38 H 1.08998 * 109.51653 * 179.31538 * 20 19 18 39 39 H 1.09000 * 109.51564 * 59.14676 * 20 19 18 40 40 H 1.08993 * 109.51934 * 183.26878 * 24 21 20 41 41 H 1.08998 * 109.51399 * 63.09724 * 24 21 20 42 42 H 1.09002 * 109.42834 * 201.31857 * 25 18 17 43 43 H 1.09007 * 109.42733 * 321.21036 * 25 18 17 44 44 H 1.09000 * 109.58587 * 65.92807 * 26 12 11 45 45 H 1.09000 * 109.58687 * 186.35490 * 26 12 11 46 46 H 1.08997 * 109.49810 * 298.57044 * 27 9 7 47 47 H 1.09000 * 109.49547 * 58.62986 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2458 -3.6622 0.0005 11 6 1.4769 -4.9866 -0.0343 12 7 0.5224 -5.0089 1.0824 13 6 0.5114 -6.0351 1.9560 14 8 1.2941 -6.9521 1.8241 15 6 -0.4741 -6.0437 3.0960 16 1 -0.6637 -5.0763 3.5611 17 6 -0.4989 -7.2784 3.9989 18 6 -1.6429 -7.0293 3.0127 19 6 -2.9846 -6.5774 3.5911 20 6 -3.7564 -7.7912 4.1135 21 16 -4.0655 -8.9381 2.7404 22 8 -4.7815 -8.2483 1.7252 23 8 -4.5968 -10.1456 3.2685 24 6 -2.3799 -9.2575 2.1462 25 6 -1.7161 -7.9288 1.7781 26 6 -0.4240 -3.8941 1.2252 27 6 0.3696 -2.5790 1.2490 28 1 -0.4851 0.8400 -0.0004 29 1 0.6253 -2.5571 -0.8900 30 1 2.8556 -3.6193 0.9030 31 1 2.8889 -3.5916 -0.8767 32 1 2.1753 -5.8174 0.0653 33 1 0.9377 -5.0737 -0.9777 34 1 -0.7048 -7.1232 5.0580 35 1 0.1978 -8.0843 3.7687 36 1 -2.8099 -5.8791 4.4095 37 1 -3.5674 -6.0845 2.8129 38 1 -4.7066 -7.4643 4.5359 39 1 -3.1687 -8.2932 4.8820 40 1 -2.4193 -9.9006 1.2671 41 1 -1.8037 -9.7472 2.9312 42 1 -2.3009 -7.4336 1.0029 43 1 -0.7087 -8.1178 1.4071 44 1 -1.1152 -3.8913 0.3824 45 1 -0.9801 -4.0038 2.1562 46 1 0.9968 -2.5460 2.1399 47 1 -0.3225 -1.7370 1.2601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362340323.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:46 Heat of formation + Delta-G solvation = -90.906924 kcal Electronic energy + Delta-G solvation = -28806.025286 eV Core-core repulsion = 24888.322121 eV Total energy + Delta-G solvation = -3917.703164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.58648 -38.49978 -37.24249 -36.67082 -36.27904 -33.58077 -33.00919 -32.35760 -31.27259 -30.13231 -26.56098 -25.67788 -24.47230 -24.13300 -22.71514 -22.02194 -20.18800 -19.55345 -18.76726 -18.22552 -17.23624 -17.07300 -16.67866 -16.26898 -15.97699 -15.66418 -15.42150 -14.69227 -14.59820 -14.34722 -13.97575 -13.66148 -13.47440 -13.34797 -13.14454 -12.86573 -12.80865 -12.55344 -12.39517 -12.32567 -12.25295 -12.22600 -12.01296 -11.68503 -11.58328 -11.33434 -11.09332 -10.97117 -10.71864 -10.49659 -10.43172 -10.37750 -10.23483 -10.13391 -9.74252 -9.48353 -9.23866 -8.99069 -8.43298 -8.08603 -6.08169 -4.14479 -0.26049 2.37701 2.53969 3.26015 3.27357 3.31185 3.34001 3.34633 3.42263 3.80924 4.10729 4.16170 4.28535 4.30111 4.36560 4.50340 4.53587 4.79555 4.84762 4.89954 5.13760 5.19965 5.21527 5.35692 5.46148 5.49064 5.53843 5.58966 5.68866 5.73534 5.81065 5.90958 5.94467 6.03329 6.07663 6.20946 6.37658 6.58577 6.81276 6.96451 7.06656 7.20571 7.60383 7.82875 7.85675 7.97888 8.34466 8.43857 8.88660 9.50882 10.97227 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021314 B = 0.002648 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.389921 B =10570.529552 C =11110.169008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.592 5.592 13 C 0.539 3.461 14 O -0.558 6.558 15 C -0.162 4.162 16 H 0.132 0.868 17 C -0.138 4.138 18 C -0.132 4.132 19 C -0.072 4.072 20 C -0.599 4.599 21 S 2.416 3.584 22 O -0.935 6.935 23 O -0.948 6.948 24 C -0.594 4.594 25 C -0.082 4.082 26 C 0.101 3.899 27 C -0.125 4.125 28 H 0.261 0.739 29 H 0.028 0.972 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.039 0.961 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 -15.210 8.655 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.323 5.323 13 C 0.327 3.673 14 O -0.439 6.439 15 C -0.183 4.183 16 H 0.149 0.851 17 C -0.175 4.175 18 C -0.132 4.132 19 C -0.110 4.110 20 C -0.728 4.728 21 S 2.598 3.402 22 O -0.932 6.932 23 O -0.945 6.945 24 C -0.724 4.724 25 C -0.120 4.120 26 C -0.021 4.021 27 C -0.163 4.163 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.109 0.891 43 H 0.119 0.881 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.545 -15.875 8.243 19.413 hybrid contribution 1.230 1.436 0.403 1.933 sum -6.315 -14.439 8.647 17.976 Atomic orbital electron populations 1.69815 1.05828 1.26637 1.50756 1.24953 0.94877 0.99047 0.95028 0.86677 0.79640 0.83165 0.78626 1.20301 1.21287 1.20356 1.21160 0.92910 0.90574 1.50520 0.92776 1.18625 0.92617 0.91703 0.93997 1.22005 0.98924 0.94178 1.01017 1.21728 0.91740 0.99804 0.87835 1.48178 1.35537 1.21037 1.27513 1.19443 0.83647 0.81919 0.82287 1.90635 1.41715 1.36573 1.74933 1.22429 0.98605 0.97172 1.00089 0.85058 1.23190 0.99281 0.98968 0.96082 1.21730 0.90768 1.01471 0.99267 1.20858 0.92656 0.95463 1.02033 1.30124 1.10192 1.13503 1.19023 1.08067 0.78120 0.76353 0.77668 1.93600 1.68969 1.74821 1.55840 1.93587 1.76648 1.44288 1.80021 1.30099 1.22725 1.06590 1.12963 1.20931 1.04458 0.90442 0.96125 1.22197 0.91516 0.87410 1.00956 1.22111 1.00021 0.94585 0.99580 0.92877 0.95429 0.92974 0.92103 0.90357 0.92072 0.87573 0.86974 0.88895 0.88715 0.84579 0.84762 0.84650 0.84778 0.89070 0.88114 0.91684 0.91252 0.94257 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.77 11.30 55.43 0.63 -23.14 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.43 29.54 -169.99 -5.02 15.40 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.51 -13.30 8.56 -34.44 -0.29 -13.60 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 10 C -0.12 -2.42 5.30 -26.61 -0.14 -2.56 16 11 C 0.11 1.92 6.43 -3.72 -0.02 1.89 16 12 N -0.59 -9.77 2.97 -172.51 -0.51 -10.28 16 13 C 0.54 8.35 6.27 -10.99 -0.07 8.28 16 14 O -0.56 -9.98 14.73 5.56 0.08 -9.90 16 15 C -0.16 -1.84 4.68 -91.72 -0.43 -2.27 16 16 H 0.13 1.36 6.77 -51.93 -0.35 1.01 16 17 C -0.14 -1.23 9.47 -26.70 -0.25 -1.48 16 18 C -0.13 -1.17 1.78 -154.47 -0.27 -1.44 16 19 C -0.07 -0.50 5.41 -26.75 -0.14 -0.65 16 20 C -0.60 -3.39 6.35 37.17 0.24 -3.16 16 21 S 2.42 20.18 5.27 -107.50 -0.57 19.62 16 22 O -0.94 -11.23 17.90 -57.82 -1.04 -12.27 16 23 O -0.95 -10.96 18.10 -57.82 -1.05 -12.01 16 24 C -0.59 -4.30 6.35 37.17 0.24 -4.06 16 25 C -0.08 -0.78 5.00 -26.76 -0.13 -0.91 16 26 C 0.10 1.66 6.37 -3.49 -0.02 1.64 16 27 C -0.12 -2.59 5.17 -26.39 -0.14 -2.73 16 28 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.35 7.01 -51.93 -0.36 0.98 16 33 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 34 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.11 1.12 7.67 -51.93 -0.40 0.72 16 36 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 37 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.14 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.14 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 43 H 0.10 1.17 6.29 -51.93 -0.33 0.84 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.07 0.94 5.60 -51.93 -0.29 0.65 16 46 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.10 2.45 6.03 -51.93 -0.31 2.13 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -33.47 374.91 -11.05 -44.52 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.50 Total: 1.01 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -1.73 Total: -18.59 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.11 Total: -33.43 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -2.00 Total: -34.18 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 20.18 SS G_CDS: -0.57 Total: 19.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.47 -11.05 -44.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362340323.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.388 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds