Wall clock time and date at job start Sat Apr 11 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 119.99857 * 2 1 4 4 H 1.48499 * 109.46995 * 239.72758 * 3 2 1 5 5 H 1.48508 * 109.46870 * 359.72506 * 3 2 1 6 6 H 1.48491 * 109.47153 * 119.72726 * 3 2 1 7 7 C 1.39952 * 120.00349 * 179.72877 * 2 1 3 8 8 H 1.08000 * 119.99914 * 207.11140 * 7 2 1 9 9 C 1.41388 * 119.99848 * 27.10862 * 7 2 1 10 10 C 1.40720 * 120.24471 * 204.85386 * 9 7 2 11 11 C 1.37614 * 119.74342 * 179.67460 * 10 9 7 12 12 C 1.38632 * 120.25054 * 0.62763 * 11 10 9 13 13 C 1.50699 * 119.75003 * 179.69369 * 12 11 10 14 14 N 1.46505 * 109.46947 * 269.97833 * 13 12 11 15 15 C 1.34774 * 119.99848 * 180.02562 * 14 13 12 16 16 O 1.21575 * 120.00406 * 0.02562 * 15 14 13 17 17 C 1.47708 * 119.99950 * 179.97438 * 15 14 13 18 18 C 1.41644 * 126.49669 * 179.70983 * 17 15 14 19 19 C 1.34708 * 105.33473 * 179.84892 * 18 17 15 20 20 N 1.35496 * 107.70904 * 0.38376 * 19 18 17 21 21 N 1.28424 * 109.72851 * 359.78157 * 20 19 18 22 22 C 1.47005 * 123.90294 * 179.81793 * 20 19 18 23 23 C 1.53148 * 108.88045 * 17.66427 * 22 20 19 24 24 C 1.53156 * 109.59338 * 308.86147 * 23 22 20 25 25 C 1.50799 * 127.53815 * 180.02562 * 19 18 17 26 26 H 1.08998 * 109.75320 * 76.15646 * 25 19 18 27 27 O 1.42899 * 109.71491 * 315.53537 * 25 19 18 28 28 C 1.38632 * 120.50180 * 359.67281 * 12 11 10 29 29 C 1.37623 * 120.24951 * 359.97438 * 28 12 11 30 30 H 0.96999 * 119.99562 * 184.18844 * 1 2 3 31 31 H 1.07996 * 120.12252 * 0.02562 * 10 9 7 32 32 H 1.08004 * 119.87699 * 180.31979 * 11 10 9 33 33 H 1.08999 * 109.47139 * 29.97605 * 13 12 11 34 34 H 1.09000 * 109.47291 * 149.98135 * 13 12 11 35 35 H 0.97001 * 119.99976 * 359.97438 * 14 13 12 36 36 H 1.07998 * 127.33470 * 0.02562 * 18 17 15 37 37 H 1.09002 * 109.56655 * 137.47835 * 22 20 19 38 38 H 1.08993 * 109.56786 * 257.71858 * 22 20 19 39 39 H 1.08993 * 109.45176 * 68.90375 * 23 22 20 40 40 H 1.09003 * 109.44616 * 188.85161 * 23 22 20 41 41 H 1.09001 * 109.54107 * 189.47159 * 24 23 22 42 42 H 1.08996 * 109.54181 * 309.64284 * 24 23 22 43 43 H 0.96693 * 114.00567 * 61.25474 * 27 25 19 44 44 H 1.08005 * 119.87815 * 180.02562 * 28 12 11 45 45 H 1.07997 * 120.12749 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.1009 1.6936 -1.2092 5 1 1.2771 2.7465 -0.0067 6 1 3.0909 1.6994 1.2157 7 6 2.0081 -1.2120 0.0057 8 1 2.9991 -1.2613 0.4322 9 6 1.4176 -2.3718 -0.5467 10 6 1.8229 -3.6481 -0.1143 11 6 1.2366 -4.7700 -0.6542 12 6 0.2595 -4.6465 -1.6299 13 6 -0.3702 -5.8827 -2.2183 14 7 0.3994 -6.3129 -3.3884 15 6 0.0190 -7.4049 -4.0807 16 8 -0.9629 -8.0327 -3.7346 17 6 0.7946 -7.8384 -5.2607 18 6 0.5240 -8.9613 -6.0806 19 6 1.4861 -8.9540 -7.0235 20 7 2.2938 -7.8938 -6.7799 21 7 1.8735 -7.2567 -5.7471 22 6 3.4674 -7.5524 -7.5968 23 6 3.3595 -8.2719 -8.9444 24 6 3.0904 -9.7615 -8.7111 25 6 1.6709 -9.9335 -8.1551 26 1 0.9420 -9.7315 -8.9399 27 8 1.5008 -11.2671 -7.6709 28 6 -0.1431 -3.3943 -2.0680 29 6 0.4243 -2.2585 -1.5370 30 1 -0.4849 -0.8378 0.0614 31 1 2.5870 -3.7467 0.6425 32 1 1.5423 -5.7505 -0.3201 33 1 -0.3739 -6.6783 -1.4733 34 1 -1.3943 -5.6611 -2.5185 35 1 1.1822 -5.8115 -3.6652 36 1 -0.2835 -9.6705 -5.9744 37 1 3.4979 -6.4750 -7.7597 38 1 4.3747 -7.8697 -7.0830 39 1 2.5413 -7.8412 -9.5214 40 1 4.2931 -8.1539 -9.4946 41 1 3.1804 -10.3003 -9.6544 42 1 3.8130 -10.1550 -7.9962 43 1 0.6233 -11.4439 -7.3052 44 1 -0.9055 -3.3098 -2.8284 45 1 0.1089 -1.2840 -1.8795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362946178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:58 Heat of formation + Delta-G solvation = -5.379472 kcal Electronic energy + Delta-G solvation = -28057.295586 eV Core-core repulsion = 24040.149970 eV Total energy + Delta-G solvation = -4017.145616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.02834 -39.22703 -38.08380 -37.76782 -35.98918 -34.87915 -33.50040 -32.26740 -30.92156 -29.96294 -29.41849 -28.75021 -26.84809 -24.78540 -23.80747 -22.98420 -22.29533 -21.18017 -20.45865 -20.22134 -19.32773 -18.40195 -17.98969 -17.29010 -16.67149 -16.33628 -15.72873 -15.14317 -15.03090 -14.78379 -14.71279 -14.45830 -14.17914 -14.06954 -13.85192 -13.70387 -13.52869 -13.13486 -12.66691 -12.50706 -12.18064 -12.03177 -11.96991 -11.85312 -11.70785 -11.54644 -11.22584 -11.20011 -10.97471 -10.63818 -10.55581 -10.45482 -9.95501 -9.70158 -9.56585 -9.27574 -9.21106 -9.02827 -8.63333 -7.76506 -7.63072 -7.28494 -4.53174 1.51733 1.90823 2.13573 2.55168 2.82216 3.10517 3.16272 3.31459 3.54391 3.59300 3.62763 3.82802 3.95361 4.04084 4.16160 4.34278 4.48065 4.59068 4.67759 4.72724 4.98436 5.05320 5.08176 5.21853 5.30201 5.42933 5.45840 5.53238 5.65447 5.77562 5.85762 6.14816 6.18965 6.23530 6.28849 6.49376 6.71412 6.80978 6.96094 7.06593 7.08463 7.31640 7.55448 7.66098 7.71018 7.73780 7.88442 7.99316 8.11499 8.23813 8.48196 8.67561 8.79975 9.95256 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017799 B = 0.002078 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.782839 B =13471.868886 C =14528.839013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.038 3.962 3 Si 1.066 2.934 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.077 0.923 9 C 0.103 3.897 10 C -0.232 4.232 11 C -0.058 4.058 12 C -0.257 4.257 13 C 0.185 3.815 14 N -0.703 5.703 15 C 0.596 3.404 16 O -0.545 6.545 17 C -0.010 4.010 18 C -0.169 4.169 19 C -0.030 4.030 20 N -0.275 5.275 21 N -0.250 5.250 22 C 0.118 3.882 23 C -0.132 4.132 24 C -0.121 4.121 25 C 0.179 3.821 26 H 0.081 0.919 27 O -0.553 6.553 28 C -0.059 4.059 29 C -0.226 4.226 30 H 0.301 0.699 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.406 0.594 36 H 0.161 0.839 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.386 0.614 44 H 0.090 0.910 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.762 -14.773 -18.531 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.185 4.185 3 Si 0.889 3.111 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.545 4.545 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.252 4.252 11 C -0.077 4.077 12 C -0.259 4.259 13 C 0.063 3.937 14 N -0.353 5.353 15 C 0.379 3.621 16 O -0.422 6.422 17 C -0.170 4.170 18 C -0.197 4.197 19 C -0.154 4.154 20 N -0.066 5.066 21 N -0.086 5.086 22 C -0.002 4.002 23 C -0.170 4.170 24 C -0.159 4.159 25 C 0.119 3.881 26 H 0.098 0.902 27 O -0.358 6.358 28 C -0.078 4.078 29 C -0.245 4.245 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.242 0.758 36 H 0.179 0.821 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.235 0.765 44 H 0.108 0.892 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.226 -12.678 -18.374 23.175 hybrid contribution -0.493 -1.962 0.090 2.025 sum 5.732 -14.640 -18.284 24.114 Atomic orbital electron populations 1.70471 1.08273 1.34403 1.27889 1.27077 0.95654 1.04468 0.91290 0.83629 0.75701 0.73723 0.78070 1.19917 1.19785 1.20059 1.20633 1.04082 0.94305 1.35462 0.90490 1.17713 0.90272 0.92571 0.89488 1.20912 1.06479 0.92543 1.05231 1.20457 0.95103 0.96713 0.95407 1.18912 1.07264 0.92565 1.07112 1.19977 0.93754 0.94501 0.85425 1.46417 1.31628 1.27546 1.29749 1.16960 0.83336 0.80869 0.80907 1.90760 1.26913 1.55762 1.68763 1.22109 0.96485 0.97977 1.00460 1.21249 1.01625 1.00684 0.96131 1.22088 0.95550 0.95110 1.02605 1.45718 1.21668 1.19099 1.20104 1.73493 1.12855 1.21832 1.00412 1.22209 0.85052 1.02643 0.90282 1.21907 1.04767 0.94893 0.95472 1.21671 0.95427 0.95992 1.02820 1.20270 0.98081 0.79754 0.90028 0.90176 1.86521 1.39256 1.27469 1.82566 1.20493 0.97489 0.92381 0.97421 1.21117 1.04545 0.96972 1.01869 0.88566 0.88819 0.89180 0.92108 0.92079 0.75845 0.82123 0.87701 0.88601 0.90077 0.87859 0.89420 0.90067 0.76493 0.89155 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.58 12.38 55.55 0.69 -19.89 16 2 C 0.04 0.95 4.90 -17.34 -0.08 0.86 16 3 Si 1.07 21.08 30.01 -169.99 -5.10 15.98 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.52 -13.47 8.98 -37.74 -0.34 -13.81 16 8 H 0.08 1.95 7.97 -52.49 -0.42 1.53 16 9 C 0.10 2.66 5.30 -106.82 -0.57 2.10 16 10 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 11 C -0.06 -1.27 9.67 -39.66 -0.38 -1.65 16 12 C -0.26 -5.43 5.27 -104.33 -0.55 -5.98 16 13 C 0.18 3.47 5.79 -5.19 -0.03 3.44 16 14 N -0.70 -12.42 5.55 -62.47 -0.35 -12.77 16 15 C 0.60 10.60 7.82 -12.39 -0.10 10.50 16 16 O -0.55 -10.96 16.93 5.30 0.09 -10.87 16 17 C -0.01 -0.15 7.13 -82.68 -0.59 -0.74 16 18 C -0.17 -2.14 10.35 -39.53 -0.41 -2.55 16 19 C -0.03 -0.31 6.29 -82.18 -0.52 -0.83 16 20 N -0.28 -3.06 3.74 -56.71 -0.21 -3.27 16 21 N -0.25 -3.61 11.72 33.46 0.39 -3.22 16 22 C 0.12 0.78 7.17 -3.69 -0.03 0.75 16 23 C -0.13 -0.52 5.91 -26.57 -0.16 -0.68 16 24 C -0.12 -0.64 5.64 -26.43 -0.15 -0.79 16 25 C 0.18 1.28 3.83 -27.62 -0.11 1.17 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 O -0.55 -4.30 13.29 -35.23 -0.47 -4.76 16 28 C -0.06 -1.32 9.67 -39.66 -0.38 -1.71 16 29 C -0.23 -5.64 7.97 -38.87 -0.31 -5.95 16 30 H 0.30 8.07 6.72 -40.82 -0.27 7.80 16 31 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 32 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 33 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 34 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 35 H 0.41 7.03 8.19 -40.82 -0.33 6.70 16 36 H 0.16 1.74 8.04 -52.49 -0.42 1.32 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.31 8.11 -51.93 -0.42 -0.11 16 40 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.52 8.12 -51.93 -0.42 0.09 16 43 H 0.39 1.81 8.77 45.56 0.40 2.21 16 44 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 45 H 0.10 2.70 6.53 -52.49 -0.34 2.36 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -32.05 379.93 -9.56 -41.61 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -5.25 Total: 13.28 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -5.08 Total: -21.81 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.52 Total: -39.15 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.38 Total: -15.63 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.10 Total: 15.98 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.05 -9.56 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362946178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.230 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds